10 20 30 40 50 60 70 80 2OJN - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 12-JAN-07 2OJN
TITLE SOLUTION STRUCTURE AND CELL SELECTIVITY OF PISCIDIN 1 AND TITLE 2 ITS ANALOGUES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PISCIDIN_PG; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HYBRID SOURCE 4 STRIPED BASS
KEYWDS PISCIDIN 1, ANTIMICROBIAL PEPTIDE, PROLINE, MEMBRANE, KEYWDS 2 STRUCTURE, ANTIMICROBIAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR S.A.LEE,Y.K.KIM,Y.KIM
REVDAT 2 24-FEB-09 2OJN 1 VERSN REVDAT 1 27-NOV-07 2OJN 0
JRNL AUTH S.A.LEE,Y.K.KIM,S.S.LIM,W.L.ZHU,H.KO,S.Y.SHIN, JRNL AUTH 2 K.S.HAHM,Y.KIM JRNL TITL SOLUTION STRUCTURE AND CELL SELECTIVITY OF JRNL TITL 2 PISCIDIN 1 AND ITS ANALOGUES. JRNL REF BIOCHEMISTRY V. 46 3653 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17328560 JRNL DOI 10.1021/BI062233U
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2OJN COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB041218.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 4.2 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM PISCIDIN_PG: 300MM SDS REMARK 210 MICELLES; 90% H2O 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 400 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.3, X-PLOR 3.851 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 -173.67 -54.35 REMARK 500 1 ILE A 9 38.35 -81.10 REMARK 500 1 HIS A 11 -100.71 -53.89 REMARK 500 1 THR A 15 -80.55 -47.28 REMARK 500 2 ARG A 7 -76.24 -156.71 REMARK 500 2 THR A 15 -72.44 -54.25 REMARK 500 3 PHE A 6 -153.94 -79.23 REMARK 500 3 ARG A 7 -81.88 -50.76 REMARK 500 3 PRO A 8 94.73 -39.80 REMARK 500 3 ILE A 9 -130.33 -80.41 REMARK 500 3 HIS A 11 -84.21 -51.91 REMARK 500 3 THR A 15 -82.20 -50.48 REMARK 500 4 PHE A 6 153.48 -29.44 REMARK 500 4 ARG A 7 41.64 27.44 REMARK 500 4 PRO A 8 -160.49 -54.71 REMARK 500 4 HIS A 11 -124.24 -65.60 REMARK 500 4 THR A 15 -82.65 -51.92 REMARK 500 5 PHE A 2 -89.63 -49.07 REMARK 500 5 HIS A 3 -55.00 70.93 REMARK 500 5 PHE A 6 -148.13 -78.96 REMARK 500 5 VAL A 10 154.96 -43.92 REMARK 500 5 HIS A 11 -114.37 -65.83 REMARK 500 5 THR A 15 -82.93 -50.66 REMARK 500 6 ARG A 7 -72.85 -50.61 REMARK 500 6 PRO A 8 154.94 -41.80 REMARK 500 6 ILE A 9 80.51 -59.40 REMARK 500 6 HIS A 11 -99.80 -58.59 REMARK 500 6 THR A 15 -79.05 -50.69 REMARK 500 7 PHE A 6 -154.04 -141.54 REMARK 500 7 PRO A 8 98.40 -57.21 REMARK 500 7 ILE A 9 46.75 -79.88 REMARK 500 7 HIS A 11 -78.50 -51.01 REMARK 500 7 THR A 15 -76.64 -52.28 REMARK 500 8 PHE A 2 49.96 -79.67 REMARK 500 8 HIS A 3 -34.91 -134.22 REMARK 500 8 PHE A 6 -153.54 -143.72 REMARK 500 8 HIS A 11 -109.62 -62.75 REMARK 500 8 THR A 15 -85.73 -50.78 REMARK 500 9 PHE A 6 -72.42 -117.06 REMARK 500 9 HIS A 11 -77.14 -43.51 REMARK 500 9 THR A 15 -84.72 -51.44 REMARK 500 10 HIS A 11 -103.91 -63.07 REMARK 500 10 THR A 15 -76.15 -46.81 REMARK 500 11 ARG A 7 -152.66 56.96 REMARK 500 11 ILE A 9 78.89 -59.42 REMARK 500 11 HIS A 11 -81.49 -44.47 REMARK 500 11 THR A 15 -83.12 -49.74 REMARK 500 12 PHE A 6 -150.61 -134.54 REMARK 500 12 ARG A 7 -150.49 -86.56 REMARK 500 12 HIS A 11 -97.10 -39.31 REMARK 500 12 THR A 15 -80.57 -45.54 REMARK 500 13 ARG A 7 -161.97 39.00 REMARK 500 13 PRO A 8 -158.47 -118.87 REMARK 500 13 HIS A 11 -84.42 -40.88 REMARK 500 13 THR A 15 -81.12 -52.30 REMARK 500 14 PHE A 6 -167.85 -118.09 REMARK 500 14 ARG A 7 -169.48 -113.01 REMARK 500 14 HIS A 11 -92.75 -41.05 REMARK 500 14 THR A 15 -72.47 -52.09 REMARK 500 15 PHE A 6 -157.97 -83.49 REMARK 500 15 HIS A 11 -95.64 -53.16 REMARK 500 15 THR A 15 -79.63 -49.82 REMARK 500 16 PHE A 6 -149.53 -116.82 REMARK 500 16 ARG A 7 50.82 -165.71 REMARK 500 16 HIS A 11 -100.66 -51.25 REMARK 500 16 THR A 15 -82.17 -50.65 REMARK 500 17 PHE A 6 -158.23 -113.42 REMARK 500 17 PRO A 8 77.41 -114.79 REMARK 500 17 ILE A 9 64.49 -66.21 REMARK 500 17 HIS A 11 -99.66 -49.53 REMARK 500 17 THR A 15 -81.23 -52.27 REMARK 500 18 PHE A 6 -147.15 -100.28 REMARK 500 18 ARG A 7 62.85 -159.92 REMARK 500 18 ILE A 9 47.68 -80.75 REMARK 500 18 HIS A 11 -85.42 -51.68 REMARK 500 18 THR A 15 -81.19 -53.37 REMARK 500 19 HIS A 11 -100.91 -49.27 REMARK 500 19 THR A 15 -76.92 -48.24 REMARK 500 20 HIS A 4 -84.49 -52.14 REMARK 500 20 PHE A 6 -166.86 -71.68 REMARK 500 20 ARG A 7 -170.24 -58.99 REMARK 500 20 HIS A 11 -112.50 -66.30 REMARK 500 20 THR A 15 -78.89 -52.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 7 0.20 SIDE_CHAIN REMARK 500 1 ARG A 18 0.19 SIDE_CHAIN REMARK 500 2 ARG A 7 0.26 SIDE_CHAIN REMARK 500 2 ARG A 18 0.17 SIDE_CHAIN REMARK 500 3 ARG A 7 0.27 SIDE_CHAIN REMARK 500 3 ARG A 18 0.19 SIDE_CHAIN REMARK 500 4 ARG A 7 0.32 SIDE_CHAIN REMARK 500 4 ARG A 18 0.29 SIDE_CHAIN REMARK 500 5 ARG A 7 0.24 SIDE_CHAIN REMARK 500 5 ARG A 18 0.31 SIDE_CHAIN REMARK 500 6 ARG A 7 0.24 SIDE_CHAIN REMARK 500 6 ARG A 18 0.19 SIDE_CHAIN REMARK 500 7 ARG A 7 0.24 SIDE_CHAIN REMARK 500 7 ARG A 18 0.32 SIDE_CHAIN REMARK 500 8 ARG A 7 0.11 SIDE_CHAIN REMARK 500 8 ARG A 18 0.19 SIDE_CHAIN REMARK 500 9 ARG A 18 0.30 SIDE_CHAIN REMARK 500 10 ARG A 7 0.27 SIDE_CHAIN REMARK 500 10 ARG A 18 0.30 SIDE_CHAIN REMARK 500 11 ARG A 18 0.27 SIDE_CHAIN REMARK 500 12 ARG A 7 0.32 SIDE_CHAIN REMARK 500 12 ARG A 18 0.24 SIDE_CHAIN REMARK 500 13 ARG A 7 0.32 SIDE_CHAIN REMARK 500 13 ARG A 18 0.17 SIDE_CHAIN REMARK 500 14 ARG A 7 0.31 SIDE_CHAIN REMARK 500 14 ARG A 18 0.29 SIDE_CHAIN REMARK 500 15 ARG A 7 0.15 SIDE_CHAIN REMARK 500 15 ARG A 18 0.29 SIDE_CHAIN REMARK 500 16 ARG A 7 0.20 SIDE_CHAIN REMARK 500 16 ARG A 18 0.27 SIDE_CHAIN REMARK 500 17 ARG A 7 0.24 SIDE_CHAIN REMARK 500 17 ARG A 18 0.31 SIDE_CHAIN REMARK 500 18 ARG A 7 0.20 SIDE_CHAIN REMARK 500 18 ARG A 18 0.31 SIDE_CHAIN REMARK 500 19 ARG A 7 0.17 SIDE_CHAIN REMARK 500 19 ARG A 18 0.32 SIDE_CHAIN REMARK 500 20 ARG A 7 0.29 SIDE_CHAIN REMARK 500 20 ARG A 18 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OJM RELATED DB: PDB REMARK 900 RELATED ID: 2OJO RELATED DB: PDB
DBREF 2OJN A 1 22 PDB 2OJN 2OJN 1 22
SEQRES 1 A 22 PHE PHE HIS HIS ILE PHE ARG PRO ILE VAL HIS VAL GLY SEQRES 2 A 22 LYS THR ILE HIS ARG LEU VAL THR GLY
HELIX 1 1 VAL A 10 GLY A 22 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000