10 20 30 40 50 60 70 80 2OFD - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SUGAR BINDING PROTEIN 03-JAN-07 2OFD
TITLE THE CRYSTAL STRUCTURE OF SCLEROTIUM ROLFSII LECTIN IN TITLE 2 COMPLEX WITH N-ACETYL-D-GALACTOSAMINE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SCLEROTIUM ROLFSII LECTIN; COMPND 3 CHAIN: A, B
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ATHELIA ROLFSII; SOURCE 3 ORGANISM_TAXID: 39291
KEYWDS LECTIN, DUAL SPECIFICITY, SUGAR BINDING PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR D.D.LEONIDAS,S.E.ZOGRAPHOS,N.G.OIKONOMAKOS
REVDAT 2 24-FEB-09 2OFD 1 VERSN REVDAT 1 01-MAY-07 2OFD 0
JRNL AUTH D.D.LEONIDAS,B.M.SWAMY,G.N.HATZOPOULOS, JRNL AUTH 2 S.J.GONCHIGAR,V.B.CHACHADI,S.R.INAMDAR, JRNL AUTH 3 S.E.ZOGRAPHOS,N.G.OIKONOMAKOS JRNL TITL STRUCTURAL BASIS FOR THE CARBOHYDRATE RECOGNITION JRNL TITL 2 OF THE SCLEROTIUM ROLFSII LECTIN JRNL REF J.MOL.BIOL. V. 368 1145 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17391699 JRNL DOI 10.1016/J.JMB.2007.02.092
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.96 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.96 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.5 REMARK 3 NUMBER OF REFLECTIONS : 21504 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1171 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.96 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.1790 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2274 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 57 REMARK 3 SOLVENT ATOMS : 193 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56000 REMARK 3 B22 (A**2) : 0.56000 REMARK 3 B33 (A**2) : -1.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.153 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.085 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.951 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2380 ; 0.010 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3228 ; 1.050 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 280 ; 6.035 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 128 ;33.020 ;24.375 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 370 ;12.604 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ; 9.826 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1850 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 894 ; 0.177 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1586 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 160 ; 0.121 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 49 ; 0.166 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 21 ; 0.160 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1462 ; 0.526 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2252 ; 0.896 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1078 ; 1.357 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 976 ; 2.075 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4600 5.5157 28.9798 REMARK 3 T TENSOR REMARK 3 T11: -0.0066 T22: -0.0569 REMARK 3 T33: -0.0108 T12: 0.0069 REMARK 3 T13: -0.0060 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.6369 L22: 0.6775 REMARK 3 L33: 1.0211 L12: 0.1093 REMARK 3 L13: 0.3544 L23: -0.0346 REMARK 3 S TENSOR REMARK 3 S11: 0.0464 S12: -0.0334 S13: -0.0204 REMARK 3 S21: 0.0033 S22: -0.0029 S23: -0.0151 REMARK 3 S31: 0.0832 S32: 0.0250 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 141 REMARK 3 ORIGIN FOR THE GROUP (A): 27.3611 23.7313 13.7325 REMARK 3 T TENSOR REMARK 3 T11: -0.0012 T22: -0.0367 REMARK 3 T33: -0.0257 T12: -0.0074 REMARK 3 T13: 0.0128 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.5275 L22: 0.4410 REMARK 3 L33: 0.8058 L12: -0.1437 REMARK 3 L13: 0.1752 L23: 0.0854 REMARK 3 S TENSOR REMARK 3 S11: -0.0151 S12: -0.0026 S13: -0.0208 REMARK 3 S21: -0.0581 S22: 0.0284 S23: 0.0140 REMARK 3 S31: -0.0638 S32: 0.0080 S33: -0.0133 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS
REMARK 4 REMARK 4 2OFD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB041065.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-DEC-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8128 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22675 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.960 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.96 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.99 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.17800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2OFC REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM ACETATE, 30 % MPD, REMARK 280 0.1 M TRIS/HCL, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 42 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.74250 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.74250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.00350 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.74250 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.74250 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.00350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.74250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.74250 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.00350 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.74250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.74250 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 32.00350 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY OF SRL IS A DIMER AND IT IS REMARK 300 INCLUDED IN THE ASYMMETRIC UNIT
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22150 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 64.00700
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1020 O HOH B 1047 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 97 -51.78 -141.38 REMARK 500 PRO B 13 5.39 -66.14 REMARK 500 GLU B 86 71.57 -104.32 REMARK 500 SER B 97 -33.83 -136.06 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGA A 144 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGA B 144 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NGA B 145 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 995 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 996 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 997
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OFC RELATED DB: PDB REMARK 900 THE FREE STRUCTURE OF SRL REMARK 900 RELATED ID: 2OFE RELATED DB: PDB REMARK 900 THE STRUCTURE OF SRL IN COMPLEX WITH N-ACETYL-D-GLUCOSAMINE
REMARK 999 REMARK 999 SEQUENCE REMARK 999 AT THE TIME OF PROCESSING, THE SEQUENCE OF THIS PROTEIN IS REMARK 999 NOT AVAILABLE AT THE UNP SEQUENCE DATABASE.
DBREF 2OFD A 0 141 PDB 2OFD 2OFD 0 141 DBREF 2OFD B 0 141 PDB 2OFD 2OFD 0 141
SEQRES 1 A 142 ACE THR TYR LYS ILE THR VAL ARG VAL TYR GLN THR ASN SEQRES 2 A 142 PRO ASN ALA PHE PHE HIS PRO VAL GLU LYS THR VAL TRP SEQRES 3 A 142 LYS TYR ALA ASN GLY GLY THR TRP THR ILE THR ASP ASP SEQRES 4 A 142 GLN HIS VAL LEU THR MET GLY GLY SER GLY THR SER GLY SEQRES 5 A 142 THR LEU ARG PHE HIS ALA ASP ASN GLY GLU SER PHE THR SEQRES 6 A 142 ALA THR PHE GLY VAL HIS ASN TYR LYS ARG TRP CYS ASP SEQRES 7 A 142 ILE VAL THR ASN LEU ALA ALA ASP GLU THR GLY MET VAL SEQRES 8 A 142 ILE ASN GLN GLN TYR TYR SER GLN LYS ASN ARG GLU GLU SEQRES 9 A 142 ALA ARG GLU ARG GLN LEU SER ASN TYR GLU VAL LYS ASN SEQRES 10 A 142 ALA LYS GLY ARG ASN PHE GLU ILE VAL TYR THR GLU ALA SEQRES 11 A 142 GLU GLY ASN ASP LEU HIS ALA ASN LEU ILE ILE GLY SEQRES 1 B 142 ACE THR TYR LYS ILE THR VAL ARG VAL TYR GLN THR ASN SEQRES 2 B 142 PRO ASN ALA PHE PHE HIS PRO VAL GLU LYS THR VAL TRP SEQRES 3 B 142 LYS TYR ALA ASN GLY GLY THR TRP THR ILE THR ASP ASP SEQRES 4 B 142 GLN HIS VAL LEU THR MET GLY GLY SER GLY THR SER GLY SEQRES 5 B 142 THR LEU ARG PHE HIS ALA ASP ASN GLY GLU SER PHE THR SEQRES 6 B 142 ALA THR PHE GLY VAL HIS ASN TYR LYS ARG TRP CYS ASP SEQRES 7 B 142 ILE VAL THR ASN LEU ALA ALA ASP GLU THR GLY MET VAL SEQRES 8 B 142 ILE ASN GLN GLN TYR TYR SER GLN LYS ASN ARG GLU GLU SEQRES 9 B 142 ALA ARG GLU ARG GLN LEU SER ASN TYR GLU VAL LYS ASN SEQRES 10 B 142 ALA LYS GLY ARG ASN PHE GLU ILE VAL TYR THR GLU ALA SEQRES 11 B 142 GLU GLY ASN ASP LEU HIS ALA ASN LEU ILE ILE GLY
HET ACE A 0 3 HET ACE B 0 3 HET NGA A 144 15 HET NGA B 144 15 HET NGA B 145 15 HET ACT B 995 4 HET ACT B 996 4 HET ACT A 997 4
HETNAM ACE ACETYL GROUP HETNAM NGA N-ACETYL-D-GALACTOSAMINE HETNAM ACT ACETATE ION
FORMUL 1 ACE 2(C2 H4 O) FORMUL 3 NGA 3(C8 H15 N O6) FORMUL 6 ACT 3(C2 H3 O2 1-) FORMUL 9 HOH *193(H2 O)
HELIX 1 1 THR A 87 TYR A 95 1 9 HELIX 2 2 GLN A 98 ARG A 107 1 10 HELIX 3 3 THR B 87 TYR B 95 1 9 HELIX 4 4 GLN B 98 ARG B 107 1 10
SHEET 1 A 6 GLY A 31 THR A 36 0 SHEET 2 A 6 GLN A 39 MET A 44 -1 O THR A 43 N THR A 32 SHEET 3 A 6 TYR A 2 GLN A 10 -1 N ILE A 4 O LEU A 42 SHEET 4 A 6 ASP A 133 ILE A 140 1 O LEU A 138 N TYR A 9 SHEET 5 A 6 ASN A 121 GLU A 128 -1 N GLU A 123 O ILE A 139 SHEET 6 A 6 ASN A 111 LYS A 115 -1 N TYR A 112 O ILE A 124 SHEET 1 B 4 PHE A 17 VAL A 24 0 SHEET 2 B 4 SER A 50 ALA A 57 -1 O ARG A 54 N VAL A 20 SHEET 3 B 4 SER A 62 HIS A 70 -1 O ALA A 65 N LEU A 53 SHEET 4 B 4 LYS A 73 THR A 80 -1 O LYS A 73 N HIS A 70 SHEET 1 C 6 GLY B 31 THR B 36 0 SHEET 2 C 6 GLN B 39 MET B 44 -1 O VAL B 41 N THR B 34 SHEET 3 C 6 TYR B 2 GLN B 10 -1 N VAL B 6 O HIS B 40 SHEET 4 C 6 ASP B 133 ILE B 140 1 O LEU B 138 N ARG B 7 SHEET 5 C 6 ASN B 121 GLU B 128 -1 N VAL B 125 O ASN B 137 SHEET 6 C 6 ASN B 111 LYS B 115 -1 N TYR B 112 O ILE B 124 SHEET 1 D 4 PHE B 17 VAL B 24 0 SHEET 2 D 4 SER B 50 ALA B 57 -1 O ARG B 54 N VAL B 20 SHEET 3 D 4 SER B 62 HIS B 70 -1 O ALA B 65 N LEU B 53 SHEET 4 D 4 LYS B 73 THR B 80 -1 O LYS B 73 N HIS B 70
LINK C ACE A 0 N THR A 1 1555 1555 1.33 LINK C ACE B 0 N THR B 1 1555 1555 1.33
SITE 1 AC1 14 ASN A 14 TYR A 27 SER A 47 GLY A 48 SITE 2 AC1 14 HIS A 70 ASN A 71 ARG A 105 HOH A1005 SITE 3 AC1 14 HOH A1035 HOH A1045 HOH A1064 HOH A1073 SITE 4 AC1 14 HOH A1076 THR B 127 SITE 1 AC2 16 SER A 110 ASN A 111 TYR A 126 THR A 127 SITE 2 AC2 16 TYR B 27 SER B 47 GLY B 48 HIS B 70 SITE 3 AC2 16 ASN B 71 TYR B 72 TYR B 96 ARG B 105 SITE 4 AC2 16 HOH B1007 HOH B1047 HOH B1062 HOH B1067 SITE 1 AC3 8 ASP B 77 ILE B 78 VAL B 79 THR B 80 SITE 2 AC3 8 ARG B 101 TYR B 112 HOH B1044 HOH B1089 SITE 1 AC4 2 ASN B 12 ASN B 14 SITE 1 AC5 5 ARG A 107 LEU A 109 SER B 97 LYS B 99 SITE 2 AC5 5 GLU B 102 SITE 1 AC6 5 ASP A 77 ILE A 78 TYR A 112 HOH A1012 SITE 2 AC6 5 HOH A1054
CRYST1 99.485 99.485 64.007 90.00 90.00 90.00 P 42 21 2 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.010052 0.000000 0.000000 0.00000
SCALE2 0.000000 0.010052 0.000000 0.00000
SCALE3 0.000000 0.000000 0.015623 0.00000