10 20 30 40 50 60 70 80 2OES - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RECOMBINATION 01-JAN-07 2OES
TITLE MSRECA-NATIVE-SSB
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN RECA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RECOMBINASE A; COMPND 5 EC: 3.4.99.37; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JC10289; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PTHIOA
KEYWDS RECOMBINATION, DNA-REPAIR, SOS RESPONCE
EXPDTA X-RAY DIFFRACTION
AUTHOR R.KRISHNA,J.RAJAN PRABU,G.P.MANJUNATH,S.DATTA,N.R.CHANDRA, AUTHOR 2 K.MUNIYAPPA,M.VIJAYAN
REVDAT 2 24-FEB-09 2OES 1 VERSN REVDAT 1 19-JUN-07 2OES 0
JRNL AUTH R.KRISHNA,J.R.PRABU,G.P.MANJUNATH,S.DATTA, JRNL AUTH 2 N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN JRNL TITL SNAPSHOTS OF RECA PROTEIN INVOLVING MOVEMENT OF JRNL TITL 2 THE C-DOMAIN AND DIFFERENT CONFORMATIONS OF THE JRNL TITL 3 DNA-BINDING LOOPS: CRYSTALLOGRAPHIC AND JRNL TITL 4 COMPARATIVE ANALYSIS OF 11 STRUCTURES OF JRNL TITL 5 MYCOBACTERIUM SMEGMATIS RECA JRNL REF J.MOL.BIOL. V. 367 1130 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17306300 JRNL DOI 10.1016/J.JMB.2007.01.058
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.DATTA,M.M.PRABU,M.B.VAZE,N.GANESH,N.R.CHANDRA, REMARK 1 AUTH 2 K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM TUBERCULOSIS REMARK 1 TITL 2 RECA AND ITS COMPLEX WITH ADP-ALF(4): IMPLICATIONS REMARK 1 TITL 3 FOR DECREASED ATPASE ACTIVITY AND MOLECULAR REMARK 1 TITL 4 AGGREGATION REMARK 1 REF NUCLEIC ACIDS RES. V. 28 4964 2000 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 11121488 REMARK 1 DOI 10.1093/NAR/28.24.4964 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.DATTA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL STRUCTURAL STUDIES ON MTRECA-NUCLEOTIDE COMPLEXES: REMARK 1 TITL 2 INSIGHTS INTO DNA AND NUCLEOTIDE BINDING AND THE REMARK 1 TITL 3 STRUCTURAL SIGNATURE OF NTP RECOGNITION REMARK 1 REF PROTEINS V. 50 474 2003 REMARK 1 REFN ISSN 0887-3585 REMARK 1 PMID 12557189 REMARK 1 DOI 10.1002/PROT.10315 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.DATTA,R.KRISHNA,N.GANESH,N.R.CHANDRA,K.MUNIYAPPA, REMARK 1 AUTH 2 M.VIJAYAN REMARK 1 TITL CRYSTAL STRUCTURES OF MYCOBACTERIUM SMEGMATIS RECA REMARK 1 TITL 2 AND ITS NUCLEOTIDE COMPLEXES REMARK 1 REF J.BACTERIOL. V. 185 4280 2003 REMARK 1 REFN ISSN 0021-9193 REMARK 1 PMID 12837805 REMARK 1 DOI 10.1128/JB.185.14.4280-4284.2003 REMARK 1 REFERENCE 4 REMARK 1 AUTH R.KRISHNA,G.P.MANJUNATH,P.KUMAR,A.SUROLIA, REMARK 1 AUTH 2 N.R.CHANDRA,K.MUNIYAPPA,M.VIJAYAN REMARK 1 TITL CRYSTALLOGRAPHIC IDENTIFICATION OF AN ORDERED REMARK 1 TITL 2 C-TERMINAL DOMAIN AND A SECOND NUCLEOTIDE-BINDING REMARK 1 TITL 3 SITE IN RECA: NEW INSIGHTS INTO ALLOSTERY REMARK 1 REF NUCLEIC ACIDS RES. V. 34 2186 2006 REMARK 1 REFN ISSN 0305-1048 REMARK 1 PMID 16648362 REMARK 1 DOI 10.1093/NAR/GKL107
REMARK 2 REMARK 2 RESOLUTION. 3.50 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 704850.550 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 5286 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.214 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.600 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.012 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.72 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 723 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 12.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2293 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -21.22000 REMARK 3 B22 (A**2) : -21.22000 REMARK 3 B33 (A**2) : 42.45000 REMARK 3 B12 (A**2) : 1.86000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.62 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.49 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.79 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 2.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.52 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 11.720; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 17.140; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 16.710; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 22.760; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.20 REMARK 3 BSOL : 41.97 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 3 : PHOS.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 3 : PHOS.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2OES COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB041044.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5789 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.930 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.62 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.54200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1UBC REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CITRATE PHOSPHATE, SODIUM CITRATE, REMARK 280 PEG 4000, NACL, PH 7.50, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 24.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 36.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 60.33333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.06667 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLN A 3 REMARK 465 ASP A 163 REMARK 465 GLY A 202 REMARK 465 VAL A 203 REMARK 465 MET A 204 REMARK 465 PHE A 205 REMARK 465 GLY A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 ILE A 331 REMARK 465 GLY A 332 REMARK 465 ALA A 333 REMARK 465 VAL A 334 REMARK 465 VAL A 335 REMARK 465 THR A 336 REMARK 465 ALA A 337 REMARK 465 GLU A 338 REMARK 465 ALA A 339 REMARK 465 ASP A 340 REMARK 465 ASP A 341 REMARK 465 VAL A 342 REMARK 465 LEU A 343 REMARK 465 PRO A 344 REMARK 465 ALA A 345 REMARK 465 PRO A 346 REMARK 465 VAL A 347 REMARK 465 ASP A 348 REMARK 465 PHE A 349
REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 4 CG CD OE1 NE2 REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 LYS A 21 CG CD CE NZ REMARK 470 ILE A 39 CG1 CG2 CD1 REMARK 470 GLU A 104 CG CD OE1 OE2 REMARK 470 LYS A 107 CG CD CE NZ REMARK 470 ARG A 154 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 160 CG CD OE1 OE2 REMARK 470 MET A 161 CG SD CE REMARK 470 SER A 164 OG REMARK 470 HIS A 165 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 166 CG1 CG2 REMARK 470 ASN A 185 CG OD1 ND2 REMARK 470 LEU A 197 CG CD1 CD2 REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 199 CG CD OE1 OE2 REMARK 470 LYS A 200 CG CD CE NZ REMARK 470 ILE A 201 CG1 CG2 CD1 REMARK 470 GLU A 209 CG CD OE1 OE2 REMARK 470 THR A 210 OG1 CG2 REMARK 470 THR A 211 OG1 CG2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 LYS A 234 CG CD CE NZ REMARK 470 ASP A 235 CG OD1 OD2 REMARK 470 LYS A 288 CG CD CE NZ REMARK 470 GLU A 298 CG CD OE1 OE2 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LEU A 312 CG CD1 CD2 REMARK 470 LYS A 323 CG CD CE NZ REMARK 470 LYS A 324 CG CD CE NZ REMARK 470 ILE A 325 CG1 CG2 CD1 REMARK 470 LYS A 326 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS A 200 CA LYS A 200 CB -0.241 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 6 CA - CB - CG ANGL. DEV. = -12.7 DEGREES REMARK 500 ASP A 7 N - CA - C ANGL. DEV. = -23.3 DEGREES REMARK 500 PRO A 6 CA - C - N ANGL. DEV. = -21.6 DEGREES REMARK 500 VAL A 166 N - CA - C ANGL. DEV. = 25.0 DEGREES REMARK 500 LYS A 200 N - CA - C ANGL. DEV. = 19.7 DEGREES REMARK 500 GLU A 199 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 GLU A 199 O - C - N ANGL. DEV. = 13.6 DEGREES REMARK 500 LYS A 200 C - N - CA ANGL. DEV. = 27.5 DEGREES REMARK 500 LYS A 200 CA - C - N ANGL. DEV. = -13.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 6 59.98 15.37 REMARK 500 ASP A 7 -56.91 -124.41 REMARK 500 ARG A 8 -83.29 -40.84 REMARK 500 LYS A 25 -74.51 -63.57 REMARK 500 VAL A 35 153.75 -13.55 REMARK 500 ARG A 36 -175.32 59.41 REMARK 500 GLN A 37 86.45 157.17 REMARK 500 VAL A 41 130.06 154.23 REMARK 500 LYS A 74 -83.11 -6.90 REMARK 500 ALA A 87 0.44 -58.68 REMARK 500 HIS A 99 52.76 39.52 REMARK 500 ALA A 100 79.08 -152.39 REMARK 500 ASP A 112 67.47 -100.08 REMARK 500 ASP A 132 -60.21 -90.71 REMARK 500 SER A 147 95.76 83.67 REMARK 500 LEU A 151 59.62 -95.66 REMARK 500 ALA A 155 -82.43 -58.59 REMARK 500 ILE A 157 0.50 -69.59 REMARK 500 MET A 161 -22.77 117.12 REMARK 500 HIS A 165 -87.18 -106.75 REMARK 500 VAL A 166 -49.29 125.36 REMARK 500 GLN A 169 -74.14 -61.41 REMARK 500 ALA A 170 73.20 -61.41 REMARK 500 ARG A 171 -65.86 176.05 REMARK 500 ASN A 195 -169.52 -113.03 REMARK 500 GLN A 196 -153.46 -127.04 REMARK 500 LEU A 197 118.34 -162.17 REMARK 500 GLU A 199 -73.55 -162.62 REMARK 500 LYS A 200 -61.80 32.66 REMARK 500 THR A 210 -14.31 -28.73 REMARK 500 THR A 211 -175.17 173.13 REMARK 500 THR A 212 -36.07 -146.74 REMARK 500 LYS A 215 -58.60 0.35 REMARK 500 ALA A 216 -71.20 -60.46 REMARK 500 THR A 237 -74.51 -69.63 REMARK 500 ASP A 238 -37.47 -153.51 REMARK 500 ALA A 239 141.69 179.36 REMARK 500 LYS A 252 -2.86 -56.98 REMARK 500 GLN A 259 146.70 -176.54 REMARK 500 GLN A 268 -30.51 -135.77 REMARK 500 PHE A 285 -6.57 -57.31 REMARK 500 SER A 291 -13.86 82.74 REMARK 500 GLU A 296 95.10 -1.89 REMARK 500 LEU A 300 -78.79 -75.39 REMARK 500 ASP A 316 -77.94 -31.85 REMARK 500 LEU A 329 -51.73 -150.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 200 ILE A 201 135.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 LYS A 200 16.37 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 514 DISTANCE = 5.14 ANGSTROMS REMARK 525 HOH A 528 DISTANCE = 7.00 ANGSTROMS REMARK 525 HOH A 556 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH A 563 DISTANCE = 5.55 ANGSTROMS REMARK 525 HOH A 587 DISTANCE = 7.34 ANGSTROMS REMARK 525 HOH A 620 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A 670 DISTANCE = 8.09 ANGSTROMS REMARK 525 HOH A 756 DISTANCE = 5.03 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 350
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UBC RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEXED WITH DATP AND ATPGS. REMARK 900 RELATED ID: 2ODN RELATED DB: PDB REMARK 900 RELATED ID: 2ODW RELATED DB: PDB REMARK 900 RELATED ID: 2OE2 RELATED DB: PDB REMARK 900 RELATED ID: 2OEP RELATED DB: PDB REMARK 900 RELATED ID: 2OFO RELATED DB: PDB
DBREF 2OES A 1 349 UNP Q59560 RECA_MYCSM 1 349
SEQRES 1 A 349 MET ALA GLN GLN ALA PRO ASP ARG GLU LYS ALA LEU GLU SEQRES 2 A 349 LEU ALA MET ALA GLN ILE ASP LYS ASN PHE GLY LYS GLY SEQRES 3 A 349 SER VAL MET ARG LEU GLY GLU GLU VAL ARG GLN PRO ILE SEQRES 4 A 349 SER VAL ILE PRO THR GLY SER ILE SER LEU ASP VAL ALA SEQRES 5 A 349 LEU GLY ILE GLY GLY LEU PRO ARG GLY ARG VAL ILE GLU SEQRES 6 A 349 ILE TYR GLY PRO GLU SER SER GLY LYS THR THR VAL ALA SEQRES 7 A 349 LEU HIS ALA VAL ALA ASN ALA GLN ALA ALA GLY GLY ILE SEQRES 8 A 349 ALA ALA PHE ILE ASP ALA GLU HIS ALA LEU ASP PRO GLU SEQRES 9 A 349 TYR ALA LYS LYS LEU GLY VAL ASP THR ASP SER LEU LEU SEQRES 10 A 349 VAL SER GLN PRO ASP THR GLY GLU GLN ALA LEU GLU ILE SEQRES 11 A 349 ALA ASP MET LEU VAL ARG SER GLY ALA LEU ASP ILE ILE SEQRES 12 A 349 VAL ILE ASP SER VAL ALA ALA LEU VAL PRO ARG ALA GLU SEQRES 13 A 349 ILE GLU GLY GLU MET GLY ASP SER HIS VAL GLY LEU GLN SEQRES 14 A 349 ALA ARG LEU MET SER GLN ALA LEU ARG LYS MET THR GLY SEQRES 15 A 349 ALA LEU ASN ASN SER GLY THR THR ALA ILE PHE ILE ASN SEQRES 16 A 349 GLN LEU ARG GLU LYS ILE GLY VAL MET PHE GLY SER PRO SEQRES 17 A 349 GLU THR THR THR GLY GLY LYS ALA LEU LYS PHE TYR ALA SEQRES 18 A 349 SER VAL ARG LEU ASP VAL ARG ARG ILE GLU THR LEU LYS SEQRES 19 A 349 ASP GLY THR ASP ALA VAL GLY ASN ARG THR ARG VAL LYS SEQRES 20 A 349 VAL VAL LYS ASN LYS VAL SER PRO PRO PHE LYS GLN ALA SEQRES 21 A 349 GLU PHE ASP ILE LEU TYR GLY GLN GLY ILE SER ARG GLU SEQRES 22 A 349 GLY SER LEU ILE ASP MET GLY VAL GLU HIS GLY PHE ILE SEQRES 23 A 349 ARG LYS SER GLY SER TRP PHE THR TYR GLU GLY GLU GLN SEQRES 24 A 349 LEU GLY GLN GLY LYS GLU ASN ALA ARG LYS PHE LEU LEU SEQRES 25 A 349 GLU ASN THR ASP VAL ALA ASN GLU ILE GLU LYS LYS ILE SEQRES 26 A 349 LYS GLU LYS LEU GLY ILE GLY ALA VAL VAL THR ALA GLU SEQRES 27 A 349 ALA ASP ASP VAL LEU PRO ALA PRO VAL ASP PHE
HET PO4 A 350 5
HETNAM PO4 PHOSPHATE ION
FORMUL 2 PO4 O4 P 3- FORMUL 3 HOH *31(H2 O)
HELIX 1 1 ASP A 7 GLY A 24 1 18 HELIX 2 2 LYS A 25 VAL A 28 5 4 HELIX 3 3 SER A 46 LEU A 53 1 8 HELIX 4 4 GLY A 73 ALA A 88 1 16 HELIX 5 5 ASP A 102 GLY A 110 1 9 HELIX 6 6 ASP A 112 LEU A 116 5 5 HELIX 7 7 THR A 123 SER A 137 1 15 HELIX 8 8 VAL A 148 LEU A 151 5 4 HELIX 9 9 LEU A 168 GLY A 188 1 21 HELIX 10 10 GLY A 214 ALA A 221 1 8 HELIX 11 11 SER A 271 HIS A 283 1 13 HELIX 12 12 GLY A 303 ASN A 314 1 12 HELIX 13 13 ASN A 314 LYS A 328 1 15
SHEET 1 A 9 LEU A 117 SER A 119 0 SHEET 2 A 9 ILE A 91 ASP A 96 1 N PHE A 94 O LEU A 117 SHEET 3 A 9 LEU A 140 ASP A 146 1 O ASP A 146 N ILE A 95 SHEET 4 A 9 THR A 190 ILE A 194 1 O ILE A 192 N ILE A 143 SHEET 5 A 9 VAL A 63 TYR A 67 1 N ILE A 64 O ALA A 191 SHEET 6 A 9 VAL A 223 GLU A 231 1 O LEU A 225 N GLU A 65 SHEET 7 A 9 GLY A 241 ASN A 251 -1 O ARG A 243 N GLU A 231 SHEET 8 A 9 GLN A 259 LEU A 265 -1 O PHE A 262 N THR A 244 SHEET 9 A 9 GLY A 269 ILE A 270 -1 O GLY A 269 N LEU A 265 SHEET 1 B 3 ILE A 286 LYS A 288 0 SHEET 2 B 3 TRP A 292 TYR A 295 -1 O THR A 294 N ARG A 287 SHEET 3 B 3 GLN A 299 GLN A 302 -1 O LEU A 300 N PHE A 293
SITE 1 AC1 5 SER A 71 SER A 72 GLY A 73 LYS A 74 SITE 2 AC1 5 THR A 75
CRYST1 103.672 103.672 72.400 90.00 90.00 120.00 P 61 6
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009646 0.005569 0.000000 0.00000
SCALE2 0.000000 0.011138 0.000000 0.00000
SCALE3 0.000000 0.000000 0.013812 0.00000