10 20 30 40 50 60 70 80 2ODX - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER OXIDOREDUCTASE 27-DEC-06 2ODX
TITLE SOLUTION STRUCTURE OF ZN(II)COX4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C OXIDASE POLYPEPTIDE IV; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: COX4 SUBUNIT; COMPND 5 EC: 1.9.3.1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: COX4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET20B+
KEYWDS ALL BETA-PROTEIN, METALLO-PROTEIN, OXIDOREDUCTASE
EXPDTA SOLUTION NMR
NUMMDL 21
MDLTYP MINIMIZED AVERAGE
AUTHOR J.H.COYNE III,S.CIOFI-BAFFONI
REVDAT 3 24-FEB-09 2ODX 1 VERSN REVDAT 2 03-APR-07 2ODX 1 JRNL REVDAT 1 09-JAN-07 2ODX 0
JRNL AUTH H.J.COYNE,S.CIOFI-BAFFONI,L.BANCI,I.BERTINI, JRNL AUTH 2 L.ZHANG,G.N.GEORGE,D.R.WINGE JRNL TITL THE CHARACTERIZATION AND ROLE OF ZINC BINDING IN JRNL TITL 2 YEAST COX4. JRNL REF J.BIOL.CHEM. V. 282 8926 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17215247 JRNL DOI 10.1074/JBC.M610303200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 8.0 REMARK 3 AUTHORS : PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON, REMARK 3 SEIBEL,SINGH,WEINER,KOLLMAN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURE CALCULATIONS WERE REMARK 3 PERFORMED WITH THE SOFTWARE PACKAGE ATNOS/CANDID/CYANA. THE REMARK 3 STRUCTURES ARE BASED ON A TOTAL OF 1218 RESTRAINTS, 1172 ARE REMARK 3 NOE-DERIVED DISTANCE CONSTRAINTS, 46 ARE DIHEDRAL ANGLE REMARK 3 RESTRAINTS.
REMARK 4 REMARK 4 2ODX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB041013.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 50 MM PHOSPHATE, 200 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1 MM ZN(II)COX4 U-15N, 50MM REMARK 210 PHOSPHATE BUFFER NA, 200 MM REMARK 210 NACL, 90% H2O, 10% D2O; 1 MM REMARK 210 ZN(II)COX4 U-15N,13C, 50MM REMARK 210 PHOSPHATE BUFFER NA, 200 MM REMARK 210 NACL, 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, HNHA, 3D_ REMARK 210 13C-SEPARATED_NOESY, 3D_15N- REMARK 210 SEPARATED_NOESY, CBCA(CO)NH, REMARK 210 CBCANH, HNCO, HN(CA)CO, (H)CCH REMARK 210 -TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 500 MHZ, 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, CARA, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 MET A 76 REMARK 465 MET A 77 REMARK 465 ALA A 78 REMARK 465 ASP A 79 REMARK 465 VAL A 80 REMARK 465 PHE A 81 REMARK 465 ASP A 82 REMARK 465 THR A 83 REMARK 465 LYS A 84 REMARK 465 PRO A 85 REMARK 465 LEU A 86 REMARK 465 ASP A 87 REMARK 465 SER A 88 REMARK 465 SER A 89 REMARK 465 ARG A 90 REMARK 465 LYS A 91 REMARK 465 GLY A 92 REMARK 465 THR A 93 REMARK 465 VAL A 148 REMARK 465 PRO A 149 REMARK 465 ASN A 150 REMARK 465 ASP A 151 REMARK 465 ASP A 152 REMARK 465 HIS A 153 REMARK 465 HIS A 154 REMARK 465 HIS A 155
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 6 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 8 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 4.4 DEGREES REMARK 500 11 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 TYR A 141 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 16 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 18 VAL A 146 CG1 - CB - CG2 ANGL. DEV. = -11.8 DEGREES REMARK 500 20 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 20 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 21 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 96 74.52 167.65 REMARK 500 1 SER A 102 -67.83 -108.16 REMARK 500 1 TYR A 103 -3.90 75.79 REMARK 500 1 SER A 114 159.92 169.49 REMARK 500 1 ALA A 116 42.43 -91.69 REMARK 500 1 HIS A 119 -145.84 -104.88 REMARK 500 1 THR A 120 -158.40 -76.56 REMARK 500 1 GLU A 136 -60.82 -95.32 REMARK 500 1 VAL A 146 133.37 -36.83 REMARK 500 2 ASP A 96 73.77 164.88 REMARK 500 2 SER A 102 111.94 -163.63 REMARK 500 2 ASP A 105 -16.73 59.55 REMARK 500 2 TYR A 106 14.63 -150.88 REMARK 500 2 SER A 114 154.51 175.44 REMARK 500 2 SER A 118 -43.43 -166.62 REMARK 500 2 HIS A 119 -158.08 -107.64 REMARK 500 2 THR A 120 -158.96 -69.64 REMARK 500 3 LYS A 95 -143.65 123.39 REMARK 500 3 ASP A 104 -101.56 -104.03 REMARK 500 3 ASP A 105 -38.33 -171.64 REMARK 500 3 SER A 114 178.50 71.08 REMARK 500 3 ALA A 116 33.48 -94.58 REMARK 500 3 HIS A 119 -144.34 -123.81 REMARK 500 3 THR A 120 -153.73 -78.39 REMARK 500 3 GLU A 136 -100.00 -96.87 REMARK 500 4 ASP A 96 70.89 161.68 REMARK 500 4 TYR A 103 35.33 -77.10 REMARK 500 4 SER A 118 -36.19 -177.82 REMARK 500 4 HIS A 119 -153.15 -118.57 REMARK 500 4 THR A 120 -155.39 -74.78 REMARK 500 4 GLU A 136 -94.18 -100.09 REMARK 500 5 LYS A 95 -122.41 -173.21 REMARK 500 5 PRO A 97 -81.83 -83.12 REMARK 500 5 ARG A 107 156.75 -48.20 REMARK 500 5 SER A 114 162.29 175.36 REMARK 500 5 HIS A 119 -148.73 -100.80 REMARK 500 5 THR A 120 -134.09 -77.67 REMARK 500 5 LYS A 125 76.22 -119.94 REMARK 500 5 PRO A 126 43.43 -92.15 REMARK 500 5 THR A 127 151.00 -28.61 REMARK 500 5 GLU A 136 -88.23 -81.41 REMARK 500 6 LYS A 95 -66.21 -4.00 REMARK 500 6 ASP A 96 77.77 176.69 REMARK 500 6 TYR A 103 40.02 -75.03 REMARK 500 6 ASP A 104 -2.18 -146.34 REMARK 500 6 ASP A 105 -16.46 63.25 REMARK 500 6 TYR A 106 27.47 -151.68 REMARK 500 6 HIS A 119 -151.37 -125.15 REMARK 500 6 THR A 120 -157.68 -73.02 REMARK 500 6 THR A 127 147.37 100.94 REMARK 500 6 GLU A 136 -66.30 -93.27 REMARK 500 6 CYS A 137 -77.13 -74.86 REMARK 500 7 ASP A 96 71.75 165.32 REMARK 500 7 SER A 102 -54.71 -137.67 REMARK 500 7 TYR A 103 11.23 81.59 REMARK 500 7 TYR A 106 81.55 -153.68 REMARK 500 7 SER A 114 144.85 106.12 REMARK 500 7 PRO A 115 93.76 -61.15 REMARK 500 7 ALA A 116 21.32 176.86 REMARK 500 7 HIS A 119 -141.10 -135.65 REMARK 500 7 THR A 120 -141.39 -85.13 REMARK 500 7 LYS A 125 88.86 -156.57 REMARK 500 7 GLU A 136 -95.38 -86.25 REMARK 500 7 VAL A 146 -164.59 38.66 REMARK 500 8 LYS A 95 -80.67 -60.22 REMARK 500 8 ASP A 96 77.78 177.13 REMARK 500 8 SER A 114 -166.06 68.59 REMARK 500 8 ALA A 116 7.54 -163.10 REMARK 500 8 HIS A 119 -148.50 -123.57 REMARK 500 8 THR A 120 -153.23 -72.68 REMARK 500 8 GLU A 136 -87.70 -86.90 REMARK 500 8 VAL A 146 -158.86 41.50 REMARK 500 9 LYS A 95 -123.48 177.09 REMARK 500 9 PRO A 97 -84.06 -83.13 REMARK 500 9 ASP A 105 7.99 -62.51 REMARK 500 9 TYR A 106 22.80 -164.08 REMARK 500 9 SER A 114 -162.20 79.50 REMARK 500 9 PRO A 115 45.93 -80.55 REMARK 500 9 HIS A 119 -73.23 -106.27 REMARK 500 9 THR A 120 -166.12 -178.99 REMARK 500 9 GLU A 136 -78.99 -103.39 REMARK 500 10 ASP A 96 70.44 167.05 REMARK 500 10 ARG A 107 175.28 -56.57 REMARK 500 10 SER A 114 133.68 -3.47 REMARK 500 10 ALA A 116 48.74 -169.27 REMARK 500 10 HIS A 119 -149.01 -115.12 REMARK 500 10 THR A 120 -155.43 -71.92 REMARK 500 10 PRO A 126 39.56 -86.47 REMARK 500 10 THR A 127 151.35 -28.02 REMARK 500 10 GLU A 130 -159.53 -136.17 REMARK 500 10 GLU A 136 -87.05 -89.65 REMARK 500 11 LYS A 95 -74.69 -121.33 REMARK 500 11 ASP A 96 75.90 179.44 REMARK 500 11 SER A 102 107.22 -162.24 REMARK 500 11 TYR A 103 41.53 -77.33 REMARK 500 11 TYR A 106 21.64 -148.36 REMARK 500 11 SER A 114 177.71 69.46 REMARK 500 11 PRO A 115 38.96 -79.23 REMARK 500 11 ALA A 116 3.20 -151.93 REMARK 500 11 HIS A 119 -148.12 -128.32 REMARK 500 11 THR A 120 -152.34 -78.16 REMARK 500 11 GLU A 136 -83.80 -96.22 REMARK 500 11 VAL A 146 -161.49 47.88 REMARK 500 12 LYS A 95 -132.00 129.73 REMARK 500 12 SER A 102 -54.59 -125.40 REMARK 500 12 SER A 114 -163.28 58.24 REMARK 500 12 HIS A 119 -149.14 -113.29 REMARK 500 12 THR A 120 -153.67 -73.41 REMARK 500 12 THR A 127 152.78 -29.85 REMARK 500 12 GLU A 136 -92.31 -83.37 REMARK 500 12 VAL A 146 -157.49 41.41 REMARK 500 13 LYS A 95 -76.64 151.28 REMARK 500 13 ASP A 96 75.64 177.14 REMARK 500 13 TYR A 106 14.25 -140.56 REMARK 500 13 SER A 114 -168.04 65.43 REMARK 500 13 HIS A 119 -158.53 -131.59 REMARK 500 13 THR A 120 -152.97 -75.55 REMARK 500 13 PRO A 126 30.40 -88.46 REMARK 500 13 THR A 127 154.86 -23.43 REMARK 500 13 GLU A 136 -91.17 -96.38 REMARK 500 13 VAL A 146 -157.89 42.12 REMARK 500 14 ASP A 96 77.38 163.55 REMARK 500 14 ASP A 104 -13.32 -173.41 REMARK 500 14 ASP A 105 -7.93 64.82 REMARK 500 14 TYR A 106 24.13 -152.34 REMARK 500 14 SER A 114 177.46 176.07 REMARK 500 14 ALA A 116 55.43 -101.85 REMARK 500 14 THR A 120 -152.58 121.12 REMARK 500 14 GLU A 136 -101.54 -89.25 REMARK 500 15 LYS A 95 -117.81 -114.84 REMARK 500 15 SER A 114 139.02 -37.21 REMARK 500 15 HIS A 119 -153.54 -100.56 REMARK 500 15 THR A 120 -154.32 -70.20 REMARK 500 15 PRO A 126 33.96 -89.23 REMARK 500 15 THR A 127 144.16 -15.25 REMARK 500 15 GLU A 130 -141.38 -143.19 REMARK 500 15 GLU A 136 -87.64 -81.50 REMARK 500 16 ASP A 96 72.09 173.38 REMARK 500 16 SER A 102 -43.78 -159.20 REMARK 500 16 ASP A 104 -84.78 -143.14 REMARK 500 16 ASP A 105 -39.54 175.30 REMARK 500 16 ARG A 107 -113.37 7.39 REMARK 500 16 SER A 114 -52.50 -158.56 REMARK 500 16 ALA A 116 99.04 66.88 REMARK 500 16 HIS A 119 -142.31 -108.18 REMARK 500 16 THR A 120 -141.68 -89.13 REMARK 500 16 THR A 127 145.08 68.56 REMARK 500 16 GLU A 136 -85.03 -98.65 REMARK 500 17 ASP A 96 66.54 168.02 REMARK 500 17 PRO A 97 -71.99 -80.08 REMARK 500 17 SER A 102 118.10 -160.63 REMARK 500 17 ASP A 104 -60.26 -105.66 REMARK 500 17 ASP A 105 -48.54 119.92 REMARK 500 17 SER A 114 174.03 68.73 REMARK 500 17 HIS A 119 -153.71 -122.98 REMARK 500 17 THR A 120 -154.51 -72.25 REMARK 500 17 THR A 127 148.84 -20.32 REMARK 500 17 GLU A 130 -146.66 -144.61 REMARK 500 17 GLU A 136 -61.73 -94.93 REMARK 500 18 LYS A 95 -123.90 -89.23 REMARK 500 18 SER A 102 -57.17 -157.84 REMARK 500 18 TYR A 106 35.28 -162.50 REMARK 500 18 ARG A 107 -164.99 -79.99 REMARK 500 18 SER A 114 175.09 89.24 REMARK 500 18 HIS A 119 -158.81 -148.03 REMARK 500 18 THR A 120 -164.13 -66.09 REMARK 500 18 GLU A 136 -67.85 -92.29 REMARK 500 18 VAL A 146 -165.21 47.05 REMARK 500 19 ASP A 96 73.10 165.43 REMARK 500 19 PRO A 97 -98.18 -87.28 REMARK 500 19 SER A 102 -50.55 -151.43 REMARK 500 19 TYR A 103 -11.24 77.62 REMARK 500 19 ASP A 105 -16.18 63.53 REMARK 500 19 TYR A 106 -68.21 -129.56 REMARK 500 19 ARG A 107 -168.79 58.77 REMARK 500 19 SER A 114 176.43 70.06 REMARK 500 19 HIS A 119 -153.59 -116.67 REMARK 500 19 THR A 120 -147.23 -74.86 REMARK 500 19 TRP A 135 -20.16 59.00 REMARK 500 19 GLU A 136 -87.73 -94.43 REMARK 500 19 VAL A 146 152.36 -43.88 REMARK 500 20 LYS A 95 -76.46 -146.70 REMARK 500 20 ASP A 96 72.39 -174.12 REMARK 500 20 SER A 102 -51.70 -125.09 REMARK 500 20 TYR A 106 12.89 -153.26 REMARK 500 20 SER A 114 151.93 173.52 REMARK 500 20 THR A 120 -159.94 156.77 REMARK 500 20 GLU A 130 -137.23 -161.60 REMARK 500 20 GLU A 136 -108.57 -88.05 REMARK 500 20 VAL A 146 140.54 -35.54 REMARK 500 21 LYS A 95 -76.18 4.27 REMARK 500 21 ASP A 96 84.68 177.84 REMARK 500 21 SER A 102 -56.77 -132.30 REMARK 500 21 TYR A 103 -18.79 73.41 REMARK 500 21 ASP A 105 4.25 -69.63 REMARK 500 21 TYR A 106 24.53 -147.16 REMARK 500 21 SER A 114 148.43 137.55 REMARK 500 21 PRO A 115 48.16 -74.23 REMARK 500 21 ALA A 116 27.35 -156.37 REMARK 500 21 HIS A 119 -63.62 -102.76 REMARK 500 21 THR A 120 -159.46 -179.51 REMARK 500 21 GLU A 136 -65.63 -100.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 116 GLY A 117 2 -147.47 REMARK 500 GLY A 117 SER A 118 3 -148.52 REMARK 500 ASN A 129 GLU A 130 4 -149.20 REMARK 500 ASN A 129 GLU A 130 6 -143.14 REMARK 500 GLY A 113 SER A 114 7 -138.72 REMARK 500 VAL A 146 GLY A 147 7 132.03 REMARK 500 TYR A 103 ASP A 104 10 134.90 REMARK 500 GLY A 113 SER A 114 10 103.26 REMARK 500 GLY A 117 SER A 118 10 -144.60 REMARK 500 VAL A 146 GLY A 147 11 132.22 REMARK 500 ARG A 107 TYR A 108 12 149.18 REMARK 500 VAL A 146 GLY A 147 13 139.33 REMARK 500 GLY A 117 SER A 118 14 -140.37 REMARK 500 HIS A 119 THR A 120 14 -145.99 REMARK 500 GLY A 113 SER A 114 21 -120.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 106 0.12 SIDE_CHAIN REMARK 500 2 TYR A 141 0.08 SIDE_CHAIN REMARK 500 3 TYR A 106 0.10 SIDE_CHAIN REMARK 500 3 ARG A 133 0.18 SIDE_CHAIN REMARK 500 3 TYR A 141 0.09 SIDE_CHAIN REMARK 500 4 TYR A 106 0.08 SIDE_CHAIN REMARK 500 5 HIS A 119 0.09 SIDE_CHAIN REMARK 500 6 TYR A 141 0.07 SIDE_CHAIN REMARK 500 7 ARG A 133 0.08 SIDE_CHAIN REMARK 500 8 TYR A 106 0.14 SIDE_CHAIN REMARK 500 9 TYR A 141 0.07 SIDE_CHAIN REMARK 500 10 TYR A 106 0.10 SIDE_CHAIN REMARK 500 11 TYR A 103 0.10 SIDE_CHAIN REMARK 500 11 TYR A 106 0.15 SIDE_CHAIN REMARK 500 11 TYR A 108 0.06 SIDE_CHAIN REMARK 500 13 TYR A 106 0.13 SIDE_CHAIN REMARK 500 13 ARG A 107 0.09 SIDE_CHAIN REMARK 500 14 TYR A 106 0.10 SIDE_CHAIN REMARK 500 14 ARG A 133 0.12 SIDE_CHAIN REMARK 500 17 TYR A 106 0.07 SIDE_CHAIN REMARK 500 18 TYR A 103 0.08 SIDE_CHAIN REMARK 500 20 TYR A 106 0.10 SIDE_CHAIN REMARK 500 21 TYR A 106 0.08 SIDE_CHAIN REMARK 500 21 TYR A 141 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 156 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 137 SG REMARK 620 2 HIS A 119 NE2 106.9 REMARK 620 3 CYS A 134 SG 76.2 113.8 REMARK 620 4 CYS A 111 SG 110.6 121.8 117.2 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 156
DBREF 2ODX A 79 155 UNP P04037 COX4_YEAST 79 155
SEQADV 2ODX MET A 76 UNP P04037 CLONING ARTIFACT SEQADV 2ODX MET A 77 UNP P04037 CLONING ARTIFACT SEQADV 2ODX ALA A 78 UNP P04037 CLONING ARTIFACT
SEQRES 1 A 80 MET MET ALA ASP VAL PHE ASP THR LYS PRO LEU ASP SER SEQRES 2 A 80 SER ARG LYS GLY THR MET LYS ASP PRO ILE ILE ILE GLU SEQRES 3 A 80 SER TYR ASP ASP TYR ARG TYR VAL GLY CYS THR GLY SER SEQRES 4 A 80 PRO ALA GLY SER HIS THR ILE MET TRP LEU LYS PRO THR SEQRES 5 A 80 VAL ASN GLU VAL ALA ARG CYS TRP GLU CYS GLY SER VAL SEQRES 6 A 80 TYR LYS LEU ASN PRO VAL GLY VAL PRO ASN ASP ASP HIS SEQRES 7 A 80 HIS HIS
HET ZN A 156 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
SHEET 1 A 3 ILE A 99 ILE A 100 0 SHEET 2 A 3 VAL A 140 LEU A 143 1 O LYS A 142 N ILE A 100 SHEET 3 A 3 VAL A 131 ARG A 133 -1 N ALA A 132 O TYR A 141 SHEET 1 B 2 VAL A 109 CYS A 111 0 SHEET 2 B 2 MET A 122 LEU A 124 -1 O LEU A 124 N VAL A 109
LINK ZN ZN A 156 SG CYS A 137 1555 1555 2.36 LINK ZN ZN A 156 NE2 HIS A 119 1555 1555 2.11 LINK ZN ZN A 156 SG CYS A 134 1555 1555 2.43 LINK ZN ZN A 156 SG CYS A 111 1555 1555 2.42
SITE 1 AC1 5 CYS A 111 HIS A 119 MET A 122 CYS A 134 SITE 2 AC1 5 CYS A 137
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000