10 20 30 40 50 60 70 80 2ODH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 22-DEC-06 2ODH
TITLE RESTRICTION ENDONUCLEASE BCNI IN THE ABSENCE OF DNA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: R.BCNI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVIBACILLUS CENTROSPORUS; SOURCE 3 ORGANISM_TAXID: 54910; SOURCE 4 GENE: BCNIR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ER2267; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PBAD24
KEYWDS MONOMERIC ENDONUCLEASE, RESTRICTION ENZYME, BCNI, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, AUTHOR 2 R.H.SZCZEPANOWSKI,URBANKE K.,V.SIKSNYS,M.BOCHTLER
REVDAT 4 13-JUL-11 2ODH 1 VERSN REVDAT 3 24-FEB-09 2ODH 1 VERSN REVDAT 2 21-AUG-07 2ODH 1 JRNL REVDAT 1 20-MAR-07 2ODH 0
JRNL AUTH M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, JRNL AUTH 2 R.H.SZCZEPANOWSKI,C.URBANKE,V.SIKSNYS,M.BOCHTLER JRNL TITL MONOMERIC RESTRICTION ENDONUCLEASE BCNI IN THE APO FORM AND JRNL TITL 2 IN AN ASYMMETRIC COMPLEX WITH TARGET DNA. JRNL REF J.MOL.BIOL. V. 369 722 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17445830 JRNL DOI 10.1016/J.JMB.2007.03.018
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.SOKOLOWSKA,M.KAUS-DROBEK,H.CZAPINSKA,G.TAMULAITIS, REMARK 1 AUTH 2 V.SIKSNYS,M.BOCHTLER REMARK 1 TITL STRUCTURAL AND MECHANISTIC SIMILARITIES BETWEEN RESTRICTION REMARK 1 TITL 2 ENDONUCLEASES BCNI AND MVAI AND THE DNA REPAIR PROTEIN MUTH. REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN
REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.62 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 39959 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2018 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2729 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2100 REMARK 3 BIN FREE R VALUE SET COUNT : 166 REMARK 3 BIN FREE R VALUE : 0.2140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1884 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 26.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.32000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1960 ; 0.012 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1802 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2646 ; 1.342 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4199 ; 0.785 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 6.739 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 295 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2183 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 388 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 375 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2090 ; 0.252 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1170 ; 0.081 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 157 ; 0.179 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.139 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 39 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1194 ; 0.859 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1930 ; 1.540 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 766 ; 2.109 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 716 ; 3.343 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 69 REMARK 3 RESIDUE RANGE : A 156 A 182 REMARK 3 RESIDUE RANGE : A 233 A 238 REMARK 3 ORIGIN FOR THE GROUP (A): 2.1810 17.7430 54.9490 REMARK 3 T TENSOR REMARK 3 T11: 0.1007 T22: 0.1474 REMARK 3 T33: 0.0818 T12: -0.0158 REMARK 3 T13: -0.0291 T23: 0.0425 REMARK 3 L TENSOR REMARK 3 L11: 1.8112 L22: 0.5791 REMARK 3 L33: 0.9584 L12: -0.1209 REMARK 3 L13: 0.3404 L23: -0.1896 REMARK 3 S TENSOR REMARK 3 S11: -0.0601 S12: 0.0727 S13: 0.1142 REMARK 3 S21: 0.0156 S22: 0.0101 S23: 0.0160 REMARK 3 S31: -0.0506 S32: -0.0556 S33: 0.0500 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 155 REMARK 3 RESIDUE RANGE : A 183 A 232 REMARK 3 ORIGIN FOR THE GROUP (A): 9.8480 25.1450 34.2820 REMARK 3 T TENSOR REMARK 3 T11: 0.0377 T22: 0.2656 REMARK 3 T33: 0.0700 T12: -0.0139 REMARK 3 T13: -0.0248 T23: 0.1275 REMARK 3 L TENSOR REMARK 3 L11: 1.4223 L22: 2.7276 REMARK 3 L33: 2.1412 L12: -0.9857 REMARK 3 L13: 0.5828 L23: -2.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.4613 S13: 0.2614 REMARK 3 S21: -0.0659 S22: -0.2062 S23: -0.2659 REMARK 3 S31: 0.0166 S32: 0.1224 S33: 0.2390 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: TLS REFINEMENT USED. HYDROGENS HAVE REMARK 3 BEEN ADDED IN THE RIDING POSITIONS.
REMARK 4 REMARK 4 2ODH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JAN-07. REMARK 100 THE RCSB ID CODE IS RCSB040997.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAY-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG REMARK 200 BEAMLINE : BW6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.05 REMARK 200 MONOCHROMATOR : TRIANGULAR MONOCHROMATOR REMARK 200 OPTICS : BENT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40038 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 4.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: MLPHARE, DM, ARP/WARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM ACETATE, 0.085 M TRI- REMARK 280 SODIUM CITRATE PH 5.6, 25.5% PEG 4000, 15% GLYCEROL, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 294K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.60350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 34.08800 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 31.80175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 34.08800 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 95.40525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.08800 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 31.80175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 34.08800 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.08800 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 95.40525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 63.60350 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 99 REMARK 465 SER A 100 REMARK 465 ARG A 101 REMARK 465 ASN A 102 REMARK 465 PRO A 103
REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 79 NZ REMARK 480 LYS A 97 CD CE NZ REMARK 480 VAL A 105 CG1 CG2 REMARK 480 LYS A 107 CE NZ REMARK 480 LYS A 129 CG CD CE NZ REMARK 480 LEU A 207 CG CD1 CD2 REMARK 480 LYS A 209 CG CD CE NZ REMARK 480 SER A 210 OG REMARK 480 LYS A 211 CG CD CE NZ
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 32 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 31 -159.69 -98.50 REMARK 500 ASN A 49 31.01 -88.50 REMARK 500 VAL A 105 148.55 137.39 REMARK 500 GLN A 139 -120.34 47.67 REMARK 500 LEU A 143 -67.74 -121.72 REMARK 500 GLU A 184 73.63 69.75 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 387 DISTANCE = 5.06 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 239 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 240
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ODI RELATED DB: PDB REMARK 900 RESTRICTION ENDONUCLEASE BCNI-COGNATE DNA SUBSTRATE COMPLEX
DBREF 2ODH A 1 238 UNP Q8RNV8 Q8RNV8_9BACL 1 238
SEQRES 1 A 238 MET LYS ILE TRP SER LYS GLU GLU VAL VAL ASN LYS LEU SEQRES 2 A 238 HIS GLU ILE LYS ASN LYS GLY TYR LEU SER VAL PRO THR SEQRES 3 A 238 ASP MET PHE ARG THR ASP ASP GLY VAL VAL GLY GLN ILE SEQRES 4 A 238 LEU GLU ARG GLN PHE GLY VAL GLN GLU ASN ASN ILE THR SEQRES 5 A 238 LEU GLY ASP LEU GLY GLU PHE GLU LEU LYS GLY MET ARG SEQRES 6 A 238 ASN ARG LYS ALA LYS SER ASN LEU THR LEU PHE HIS LYS SEQRES 7 A 238 LYS PRO VAL ALA GLY GLN THR VAL ILE GLN ILE PHE ASN SEQRES 8 A 238 ARG PHE GLY TYR VAL LYS PRO SER SER ARG ASN PRO GLU SEQRES 9 A 238 VAL MET LYS LYS LYS LEU PHE THR THR ILE LYS GLY GLY SEQRES 10 A 238 ARG LEU ASN ASN LEU GLY LEU THR LEU ASN ALA LYS HIS SEQRES 11 A 238 ALA SER GLU ILE ASN LEU TYR TYR GLN ASP GLU TYR LEU SEQRES 12 A 238 SER THR TRP ASP LEU ASN LEU SER LYS ILE GLU LYS LEU SEQRES 13 A 238 VAL LEU VAL PHE ALA GLU THR ILE GLY ARG ALA ASN SER SEQRES 14 A 238 PRO GLU GLU GLN PHE HIS PHE THR LYS ALA TYR MET LEU SEQRES 15 A 238 THR GLU ILE ASN ASP ILE THR SER LEU ILE ASN ASP GLY SEQRES 16 A 238 VAL LEU VAL MET ASP LEU CYS ILE ASP GLN ASP LEU SER SEQRES 17 A 238 LYS SER LYS GLY PRO HIS ASP ARG GLY PRO HIS LEU ARG SEQRES 18 A 238 ILE PRO ILE SER LYS LEU ASP LYS LEU TYR ARG ASN ILE SEQRES 19 A 238 GLU ARG LEU LEU
HET ACT A 239 4 HET PEG A 240 7
HETNAM ACT ACETATE ION HETNAM PEG DI(HYDROXYETHYL)ETHER
FORMUL 2 ACT C2 H3 O2 1- FORMUL 3 PEG C4 H10 O3 FORMUL 4 HOH *205(H2 O)
HELIX 1 1 SER A 5 LYS A 19 1 15 HELIX 2 2 GLY A 34 GLY A 45 1 12 HELIX 3 3 THR A 85 GLY A 94 1 10 HELIX 4 4 ASN A 149 GLU A 154 1 6 HELIX 5 5 ILE A 188 ASP A 194 1 7 HELIX 6 6 LYS A 226 LEU A 230 1 5
SHEET 1 A 6 ILE A 3 TRP A 4 0 SHEET 2 A 6 ASN A 50 LEU A 53 1 O THR A 52 N TRP A 4 SHEET 3 A 6 GLY A 57 ARG A 65 -1 O PHE A 59 N ILE A 51 SHEET 4 A 6 LEU A 156 ILE A 164 1 O VAL A 157 N GLU A 60 SHEET 5 A 6 GLN A 173 ILE A 185 -1 O HIS A 175 N GLU A 162 SHEET 6 A 6 LEU A 22 SER A 23 -1 N LEU A 22 O PHE A 174 SHEET 1 B 6 ILE A 3 TRP A 4 0 SHEET 2 B 6 ASN A 50 LEU A 53 1 O THR A 52 N TRP A 4 SHEET 3 B 6 GLY A 57 ARG A 65 -1 O PHE A 59 N ILE A 51 SHEET 4 B 6 LEU A 156 ILE A 164 1 O VAL A 157 N GLU A 60 SHEET 5 B 6 GLN A 173 ILE A 185 -1 O HIS A 175 N GLU A 162 SHEET 6 B 6 TYR A 231 ARG A 236 -1 O ARG A 232 N GLU A 184 SHEET 1 C 5 ASN A 72 HIS A 77 0 SHEET 2 C 5 HIS A 219 PRO A 223 -1 O LEU A 220 N LEU A 75 SHEET 3 C 5 VAL A 198 ASP A 206 -1 N VAL A 198 O ARG A 221 SHEET 4 C 5 LYS A 107 LYS A 115 -1 N ILE A 114 O MET A 199 SHEET 5 C 5 TYR A 95 LYS A 97 -1 N TYR A 95 O LYS A 109 SHEET 1 D 4 ASN A 72 HIS A 77 0 SHEET 2 D 4 HIS A 219 PRO A 223 -1 O LEU A 220 N LEU A 75 SHEET 3 D 4 VAL A 198 ASP A 206 -1 N VAL A 198 O ARG A 221 SHEET 4 D 4 HIS A 214 ASP A 215 -1 O HIS A 214 N ASP A 204 SHEET 1 E 4 ALA A 82 GLY A 83 0 SHEET 2 E 4 GLU A 141 ASP A 147 -1 O THR A 145 N ALA A 82 SHEET 3 E 4 GLU A 133 TYR A 138 -1 N LEU A 136 O SER A 144 SHEET 4 E 4 LEU A 124 ASN A 127 -1 N ASN A 127 O ASN A 135
SITE 1 AC1 5 LEU A 75 LYS A 78 ASP A 147 LEU A 148 SITE 2 AC1 5 ASN A 149 SITE 1 AC2 3 PHE A 160 ILE A 224 HOH A 273
CRYST1 68.176 68.176 127.207 90.00 90.00 90.00 P 41 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.014660 0.000000 0.000000 0.00000
SCALE2 0.000000 0.014660 0.000000 0.00000
SCALE3 0.000000 0.000000 0.007857 0.00000