2ODC - Header Asymmetric Unit

HEADER MEMBRANE PROTEIN 22-DEC-06 2ODC

TITLE LEM-DOMAIN OF THE NUCLEAR ENVELOPE PROTEIN EMERIN

COMPND MOL_ID: 1; COMPND 2 MOLECULE: EMERIN; COMPND 3 CHAIN: I; COMPND 4 FRAGMENT: RESIDUES 2-47; COMPND 5 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 CELLULAR_LOCATION: NUCLEUS; SOURCE 6 GENE: EMD, EDMD, STA; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562

KEYWDS INNER NUCLEAR MEMBRANE PROTEIN, LEM-DOMAIN MULTIDIMENSIONAL KEYWDS 2 NMR DIPOLAR COUPLINGS

EXPDTA SOLUTION NMR

MDLTYP MINIMIZED AVERAGE

AUTHOR G.M.CLORE,M.CAI

REVDAT 3 24-FEB-09 2ODC 1 VERSN REVDAT 2 22-MAY-07 2ODC 1 JRNL REVDAT 1 13-MAR-07 2ODC 0

JRNL AUTH M.CAI,Y.HUANG,J.Y.SUH,J.M.LOUIS,R.GHIRLANDO, JRNL AUTH 2 R.CRAIGIE,G.M.CLORE JRNL TITL SOLUTION NMR STRUCTURE OF THE JRNL TITL 2 BARRIER-TO-AUTOINTEGRATION FACTOR-EMERIN COMPLEX. JRNL REF J.BIOL.CHEM. V. 282 14525 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17355960 JRNL DOI 10.1074/JBC.M700576200

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED BY REMARK 3 SIMULATED ANNEALING IN TORSION ANGLE SPACE. THE TARGET REMARK 3 FUNCTION COMPRISES TERMS FOR THE THE NOE RESTRAINTS, TORSION REMARK 3 ANGLE RESTRAINTS, CARBON CHEMICAL SHIFT RESTRAINTS, THE REMARK 3 DIPOLAR COUPLING RESTRAINTS, THE RADIUS OF GYRATION, A QUARTIC REMARK 3 VAN DER WAALS REPULSION TERM, A MULTIDIMENSIONAL TORSION ANGLE REMARK 3 DATABASE POTENTIAL OF MEAN FORCE, AND A MULTIDIMENSIONAL REMARK 3 HYDROGEN BONDING

REMARK 4 REMARK 4 2ODC COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 7 REMARK 7 IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE REMARK 7 RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED REMARK 7 ANNEALING STRUCTURES AND THE MEAN COORDINATE REMARK 7 POSITIONS. REMARK 7 REMARK 7 REMARK 7 STRUCTURAL STATISTICS: REMARK 7 --------------------------------------------------------- REMARK 7 DEVIATIONS FROM IDEALIZED GEOMETRY: REMARK 7 BONDS 0.004 A REMARK 7 ANGLES 0.39 DEG REMARK 7 IMPROPERS 0.58 DEG REMARK 7 RMS DEVIATIONS FROM EXPT RESTRAINTS REMARK 7 NOES (489) 0.016 A REMARK 7 TORSION ANGLES (129) 0.32 DEG REMARK 7 13C CA CHEMICAL SHIFTS (47) 1.27 PPM REMARK 7 13C CB CHEMICAL SHIFTS (45) 0.70 PPM REMARK 7 REMARK 7 DIPOLAR COUPLING R-FACTORS (CLORE AND GARRETT (1999) REMARK 7 J. AM. CHEM. SOC. 121, 9008-9012): REMARK 7 1DNH (38) 2.3% REMARK 7 1DNC' (36) 11.5% REMARK 7 2DHNC' (36) 12.8% REMARK 7 % RESIDUES IN MOST FAVORABLE REMARK 7 REGION OF RAMACHADRAN MAP 99.5% REMARK 7 -------------------------------------------------------- REMARK 7 COORDINATE PRECISION (RESIDUES 2-46): REMARK 7 BACKBONE: 0.20(+/-0.06) A REMARK 7 ALL HEAVY ATOMS: 0.87(+/-0.09) A

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040992.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.00 REMARK 210 PH : 6.50 REMARK 210 IONIC STRENGTH : 50 MM POTASSIUM PHOSPHATE REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DOUBLE AND TRIPLE RESONANCE REMARK 210 FOR ASSIGNMENT OF PROTEIN, REMARK 210 QUANTITATIVE J CORRELATION FOR REMARK 210 COUPLING CONSTANTS, 3D REMARK 210 SEPARATED NOE EXPERIMENTS, 2D REMARK 210 HETERONUCLEAR FOR DIPOLAR REMARK 210 COUPLING MEASUREMENTS IN REMARK 210 LIQUID CRYSTALLINE MEDIUM OF REMARK 210 PHAGE PF1 REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ, 600 MHZ, 750 MHZ, REMARK 210 800 MHZ REMARK 210 SPECTROMETER MODEL : DMX, DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR-NIH REMARK 210 METHOD USED : RESTRAINED SIMULATED REMARK 210 ANNEALING IN TORION ANGLE SPACE REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 180 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : RESTRAINED REGULARIZED MEAN REMARK 210 STRUCTURE REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ODG RELATED DB: PDB REMARK 900 COMPLEX OF BARRIER-TO-AUTHOINTEGRATION FACTOR AND LEM- REMARK 900 DOMAIN OF EMERIN

DBREF 2ODC I 2 47 UNP P50402 EMD_HUMAN 2 47

SEQADV 2ODC HIS I 1 UNP P50402 CLONING ARTIFACT

SEQRES 1 I 47 HIS ASP ASN TYR ALA ASP LEU SER ASP THR GLU LEU THR SEQRES 2 I 47 THR LEU LEU ARG ARG TYR ASN ILE PRO HIS GLY PRO VAL SEQRES 3 I 47 VAL GLY SER THR ARG ARG LEU TYR GLU LYS LYS ILE PHE SEQRES 4 I 47 GLU TYR GLU THR GLN ARG ARG ARG

HELIX 1 1 ASP I 2 LEU I 7 5 6 HELIX 2 2 SER I 8 TYR I 19 1 12 HELIX 3 3 VAL I 27 ARG I 47 1 21

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000