2OA4 - Header Asymmetric Unit

HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-DEC-06 2OA4

TITLE SOLUTION NMR STRUCTURE: NORTHEAST STRUCTURAL GENOMICS TITLE 2 CONSORTIUM TARGET SIR5

COMPND MOL_ID: 1; COMPND 2 MOLECULE: SIR5; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER POMEROYI; SOURCE 3 ORGANISM_TAXID: 89184; SOURCE 4 GENE: SPO1678; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: XL10; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21

KEYWDS SIR5, NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR L.WANG,P.ROSSI,C.X.CHEN,C.NWOSU,K.CUNNINGHAM,L.-C.MA,R.XIAO, AUTHOR 2 J.LIU,M.C.BARAN,G.V.T.SWAPNA,T.B.ACTON,R.BURKHARD, AUTHOR 3 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG)

REVDAT 2 24-FEB-09 2OA4 1 VERSN REVDAT 1 06-MAR-07 2OA4 0

JRNL AUTH L.WANG,P.ROSSI,C.X.CHEN,C.NWOSU,K.CUNNINGHAM, JRNL AUTH 2 L.-C.MA,R.XIAO,J.LIU,M.C.BARAN,G.V.T.SWAPNA, JRNL AUTH 3 T.B.ACTON,R.BURKHARD,G.T.MONTELIONE JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JRNL TITL 2 SIR5 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 2.11.2 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2OA4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB040878.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1M NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0MM U-13C, 15N SIR5, 5% REMARK 210 D2O, 95% H2O; 1.150MM 5%-13C, REMARK 210 15N SIR5, 5% D2O, 95% H2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY, 3D_ REMARK 210 15N-SEPARATED_NOESY, HCCH- REMARK 210 TOCSY, HCCH-COSY, CCCONH- REMARK 210 TOCSY, 3D-HNCACB, HNCOCACB, REMARK 210 HBHACONH, HNCO, C13_HSQC_NOCT REMARK 210 STEREOSPECIFIC VL ME ASSIGN, REMARK 210 HET-NOE, T1/TIRHO, C13 REMARK 210 AROMATIC NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : VNMR 6.1C, XWINNMR 3.5, DYANA REMARK 210 1.2, NMRPIPE 2005, AUTOASSIGN REMARK 210 2.2.1, AUTOSTRUCTURE 2.1.1 REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 8 -49.63 -168.40 REMARK 500 1 ARG A 11 -32.05 72.20 REMARK 500 1 ASP A 17 21.78 -154.58 REMARK 500 1 SER A 19 -162.17 59.06 REMARK 500 1 PRO A 28 49.55 -75.65 REMARK 500 1 ALA A 29 -45.82 71.54 REMARK 500 1 ASN A 30 -74.11 -71.25 REMARK 500 1 THR A 31 -170.76 60.48 REMARK 500 1 ARG A 32 -73.90 -118.21 REMARK 500 1 LEU A 50 -76.46 -105.68 REMARK 500 1 LEU A 62 -102.76 36.75 REMARK 500 1 GLU A 76 -61.22 67.60 REMARK 500 1 ALA A 81 -12.99 68.91 REMARK 500 1 HIS A 96 103.11 68.94 REMARK 500 1 HIS A 98 -160.61 -161.87 REMARK 500 2 ALA A 29 -45.21 -170.63 REMARK 500 2 ASN A 30 79.51 -116.43 REMARK 500 2 ARG A 33 134.80 69.76 REMARK 500 2 LEU A 50 -75.27 -94.59 REMARK 500 2 LEU A 62 -97.95 44.05 REMARK 500 2 HIS A 77 16.53 58.73 REMARK 500 2 GLU A 95 153.03 73.73 REMARK 500 2 HIS A 99 17.19 -147.17 REMARK 500 3 LYS A 6 104.92 -162.78 REMARK 500 3 ARG A 11 77.99 -103.76 REMARK 500 3 ASP A 17 11.73 -142.39 REMARK 500 3 SER A 19 -172.57 62.46 REMARK 500 3 PRO A 28 41.13 -75.73 REMARK 500 3 ALA A 29 -60.43 69.58 REMARK 500 3 ASN A 30 48.02 -94.53 REMARK 500 3 LEU A 50 -76.83 -106.31 REMARK 500 3 LEU A 62 -91.23 52.25 REMARK 500 3 GLU A 76 -67.36 69.24 REMARK 500 3 LYS A 79 -65.68 69.16 REMARK 500 3 HIS A 96 -8.23 69.97 REMARK 500 3 HIS A 99 -50.14 77.75 REMARK 500 3 HIS A 100 33.70 -164.41 REMARK 500 4 MET A 2 -78.01 -92.07 REMARK 500 4 PRO A 27 119.05 -38.41 REMARK 500 4 PRO A 28 47.72 -76.24 REMARK 500 4 ALA A 29 -51.53 70.97 REMARK 500 4 ASN A 30 -77.16 -64.79 REMARK 500 4 THR A 31 132.57 65.22 REMARK 500 4 ARG A 33 -35.37 76.61 REMARK 500 4 TRP A 34 100.23 68.74 REMARK 500 4 LEU A 50 -75.48 -106.10 REMARK 500 4 LEU A 62 -92.53 50.30 REMARK 500 4 GLU A 76 -82.16 70.20 REMARK 500 4 LYS A 79 -66.57 69.96 REMARK 500 4 HIS A 100 -67.25 70.62 REMARK 500 5 LEU A 4 -156.84 -94.86 REMARK 500 5 ALA A 29 -58.83 -172.49 REMARK 500 5 THR A 31 120.88 69.63 REMARK 500 5 LEU A 50 -76.44 -107.56 REMARK 500 5 LEU A 62 -97.34 41.90 REMARK 500 5 GLU A 76 -57.59 67.16 REMARK 500 5 HIS A 100 149.99 -173.26 REMARK 500 6 MET A 2 82.68 59.35 REMARK 500 6 PRO A 10 -155.63 -77.88 REMARK 500 6 ASN A 30 113.69 -166.22 REMARK 500 6 LEU A 50 -71.05 -103.67 REMARK 500 6 THR A 59 -62.04 -100.38 REMARK 500 6 LEU A 62 -97.05 55.18 REMARK 500 6 LYS A 79 -73.56 -97.15 REMARK 500 6 ASP A 80 -30.56 -132.50 REMARK 500 6 LYS A 83 -4.17 67.81 REMARK 500 6 VAL A 84 106.28 -58.53 REMARK 500 6 HIS A 98 41.51 -95.52 REMARK 500 7 MET A 2 101.16 71.64 REMARK 500 7 ARG A 5 -65.02 -152.82 REMARK 500 7 LYS A 6 94.18 -176.23 REMARK 500 7 VAL A 7 88.83 -170.23 REMARK 500 7 PRO A 16 11.40 -66.85 REMARK 500 7 PRO A 27 109.66 -47.67 REMARK 500 7 ALA A 29 -44.84 -176.93 REMARK 500 7 LEU A 50 -76.25 -97.14 REMARK 500 7 LEU A 62 -96.47 45.44 REMARK 500 7 GLU A 76 -38.59 74.86 REMARK 500 7 LYS A 79 -51.46 -140.53 REMARK 500 7 ALA A 81 -9.93 70.05 REMARK 500 7 HIS A 99 -66.86 -130.47 REMARK 500 8 MET A 2 -61.46 68.49 REMARK 500 8 ARG A 5 -75.64 -131.82 REMARK 500 8 LYS A 6 -89.50 -159.25 REMARK 500 8 ALA A 29 -54.05 71.13 REMARK 500 8 THR A 31 -2.30 62.03 REMARK 500 8 ARG A 32 -34.47 73.19 REMARK 500 8 LEU A 50 -76.42 -105.31 REMARK 500 8 LEU A 62 -95.63 32.05 REMARK 500 8 GLU A 76 -58.67 73.73 REMARK 500 8 LYS A 79 -41.42 179.93 REMARK 500 8 ASP A 80 -57.90 -131.64 REMARK 500 8 ALA A 81 -18.57 76.66 REMARK 500 8 HIS A 98 124.62 71.18 REMARK 500 9 MET A 2 -82.01 -109.76 REMARK 500 9 ARG A 5 -75.97 -127.06 REMARK 500 9 PRO A 10 78.27 -59.15 REMARK 500 9 ALA A 29 -53.83 -167.66 REMARK 500 9 THR A 31 89.02 63.08 REMARK 500 9 ARG A 33 89.91 -163.46 REMARK 500 9 LEU A 50 -75.81 -103.18 REMARK 500 9 THR A 59 -66.36 -100.57 REMARK 500 9 LEU A 62 -92.59 54.85 REMARK 500 9 GLU A 76 -66.98 69.96 REMARK 500 9 ASP A 80 32.62 -78.52 REMARK 500 9 GLU A 95 -122.24 -79.51 REMARK 500 9 HIS A 96 -65.14 -171.08 REMARK 500 9 HIS A 97 85.59 -168.25 REMARK 500 9 HIS A 100 85.86 -150.60 REMARK 500 10 PHE A 3 -79.78 66.74 REMARK 500 10 LEU A 4 -41.38 179.11 REMARK 500 10 LYS A 6 131.86 70.67 REMARK 500 10 PRO A 10 104.96 -48.03 REMARK 500 10 ALA A 29 -54.52 70.98 REMARK 500 10 LEU A 50 -74.18 -105.68 REMARK 500 10 LEU A 62 -96.02 44.52 REMARK 500 10 GLU A 76 -11.42 71.88 REMARK 500 10 LYS A 79 -67.03 -127.04 REMARK 500 10 ALA A 81 -31.51 77.03 REMARK 500 10 HIS A 100 -92.85 49.60 REMARK 500 11 PRO A 28 73.49 -65.92 REMARK 500 11 ALA A 29 -72.34 64.80 REMARK 500 11 THR A 31 -166.71 62.52 REMARK 500 11 LEU A 50 -76.43 -105.40 REMARK 500 11 LEU A 62 -92.38 40.34 REMARK 500 11 ASP A 80 -41.43 -161.54 REMARK 500 11 HIS A 97 73.24 -115.21 REMARK 500 11 HIS A 99 -53.58 69.80 REMARK 500 12 PHE A 3 -69.36 -123.63 REMARK 500 12 ALA A 24 -38.23 -148.52 REMARK 500 12 ALA A 29 -58.89 72.85 REMARK 500 12 THR A 31 100.07 60.51 REMARK 500 12 ARG A 33 91.06 68.67 REMARK 500 12 LEU A 50 -75.54 -106.32 REMARK 500 12 LEU A 62 -149.76 58.94 REMARK 500 12 GLU A 76 -43.37 73.36 REMARK 500 12 LYS A 79 -70.21 -62.56 REMARK 500 12 GLU A 95 -45.42 70.39 REMARK 500 12 HIS A 98 87.36 -68.67 REMARK 500 12 HIS A 99 37.98 -171.44 REMARK 500 13 MET A 2 -37.83 -173.54 REMARK 500 13 PRO A 16 41.94 -69.26 REMARK 500 13 ASP A 17 -43.58 -135.45 REMARK 500 13 ALA A 29 -56.10 70.12 REMARK 500 13 ASN A 30 53.89 -104.58 REMARK 500 13 ARG A 33 87.11 61.89 REMARK 500 13 LEU A 50 -76.31 -106.82 REMARK 500 13 LEU A 62 -90.64 49.68 REMARK 500 13 GLU A 76 -49.75 72.83 REMARK 500 13 LYS A 79 -60.16 70.83 REMARK 500 13 ALA A 81 -10.29 77.30 REMARK 500 13 GLU A 95 -173.44 59.87 REMARK 500 13 HIS A 96 96.23 62.09 REMARK 500 13 HIS A 98 -97.52 54.31 REMARK 500 13 HIS A 99 18.58 -140.15 REMARK 500 14 ARG A 5 -108.85 67.59 REMARK 500 14 ALA A 29 -48.28 -155.48 REMARK 500 14 THR A 31 -53.96 60.21 REMARK 500 14 ARG A 32 -61.94 175.88 REMARK 500 14 TRP A 34 95.71 64.83 REMARK 500 14 LEU A 50 -75.53 -105.56 REMARK 500 14 LEU A 62 -99.84 51.44 REMARK 500 14 GLU A 76 -68.25 69.75 REMARK 500 14 LYS A 79 -80.60 -141.65 REMARK 500 14 LEU A 94 44.28 -96.18 REMARK 500 15 PHE A 3 -172.01 65.41 REMARK 500 15 ALA A 29 -42.00 -178.70 REMARK 500 15 THR A 31 137.63 68.82 REMARK 500 15 LEU A 50 -75.37 -105.95 REMARK 500 15 LEU A 62 -95.25 55.89 REMARK 500 15 GLU A 76 -50.86 69.46 REMARK 500 15 ALA A 81 -27.28 73.45 REMARK 500 16 GLU A 8 79.67 58.31 REMARK 500 16 ALA A 29 -59.32 69.16 REMARK 500 16 THR A 31 138.32 71.18 REMARK 500 16 ARG A 33 106.44 74.27 REMARK 500 16 LEU A 50 -77.28 -94.39 REMARK 500 16 LEU A 62 -95.49 53.23 REMARK 500 16 GLU A 76 -45.96 71.87 REMARK 500 16 HIS A 77 -77.82 -94.03 REMARK 500 16 ASP A 80 36.92 -97.78 REMARK 500 16 LYS A 83 -91.37 -105.70 REMARK 500 16 VAL A 84 100.77 43.11 REMARK 500 17 LYS A 6 -78.56 71.95 REMARK 500 17 VAL A 7 83.08 58.72 REMARK 500 17 ALA A 24 -32.81 -159.94 REMARK 500 17 ALA A 29 -40.15 71.38 REMARK 500 17 ARG A 32 -56.51 72.36 REMARK 500 17 LEU A 50 -75.19 -105.67 REMARK 500 17 LEU A 62 -80.32 -6.44 REMARK 500 17 ALA A 75 -63.80 -90.56 REMARK 500 17 GLU A 76 -81.41 58.76 REMARK 500 17 LYS A 79 -34.52 72.66 REMARK 500 17 HIS A 96 37.14 -82.67 REMARK 500 17 HIS A 97 -68.76 -96.98 REMARK 500 17 HIS A 98 74.64 49.02 REMARK 500 17 HIS A 100 -87.47 60.70 REMARK 500 18 LEU A 4 -62.52 -157.72 REMARK 500 18 LYS A 6 -32.44 173.14 REMARK 500 18 GLU A 8 -72.86 67.54 REMARK 500 18 ALA A 29 -37.09 -174.19 REMARK 500 18 LEU A 50 -75.22 -105.55 REMARK 500 18 LEU A 62 -82.48 57.44 REMARK 500 18 HIS A 77 -67.67 -120.17 REMARK 500 18 LYS A 79 -38.83 68.15 REMARK 500 18 THR A 85 -71.92 -48.52 REMARK 500 18 HIS A 96 39.87 -88.69 REMARK 500 19 LEU A 4 -50.67 71.79 REMARK 500 19 PRO A 16 -6.02 -59.75 REMARK 500 19 PRO A 27 109.48 -33.38 REMARK 500 19 ALA A 29 -71.65 68.39 REMARK 500 19 THR A 31 99.28 63.61 REMARK 500 19 ARG A 33 101.65 71.14 REMARK 500 19 LEU A 50 -76.24 -101.63 REMARK 500 19 LEU A 62 -100.10 34.60 REMARK 500 19 GLU A 76 -52.92 71.19 REMARK 500 19 LYS A 79 -54.91 -163.84 REMARK 500 19 ASP A 80 -73.97 -69.07 REMARK 500 19 HIS A 99 105.97 64.85 REMARK 500 20 MET A 2 -59.99 72.17 REMARK 500 20 LEU A 4 -54.09 -139.61 REMARK 500 20 LYS A 6 -33.00 -171.52 REMARK 500 20 GLU A 8 -32.67 79.54 REMARK 500 20 PRO A 10 39.28 -72.11 REMARK 500 20 ALA A 29 -36.26 -173.47 REMARK 500 20 ARG A 33 94.12 69.97 REMARK 500 20 LEU A 50 -75.73 -105.99 REMARK 500 20 LEU A 62 -91.42 54.60 REMARK 500 20 GLU A 76 -60.54 68.32 REMARK 500 20 ALA A 81 -18.95 73.81 REMARK 500 20 HIS A 96 -144.79 -175.66 REMARK 500 20 HIS A 100 -53.95 -179.90 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SIR5 RELATED DB: TARGETDB

REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE RESIDUE 59 IS A THR. THIS REMARK 999 DISCREPANCY COULD POSSIBLY BE DUE TO A NATURALLY REMARK 999 OCCURING POLYMORPHISM, AN ERROR IN THE SEQUENCE DATABASE, REMARK 999 OR A MUTATION IN THEIR SPECIFIC CLONE

DBREF 2OA4 A 1 93 UNP Q5LST8 Q5LST8_SILPO 1 93

SEQADV 2OA4 THR A 59 UNP Q5LST8 ILE 59 SEE REMARK 999 SEQADV 2OA4 LEU A 94 UNP Q5LST8 CLONING ARTIFACT SEQADV 2OA4 GLU A 95 UNP Q5LST8 CLONING ARTIFACT SEQADV 2OA4 HIS A 96 UNP Q5LST8 EXPRESSION TAG SEQADV 2OA4 HIS A 97 UNP Q5LST8 EXPRESSION TAG SEQADV 2OA4 HIS A 98 UNP Q5LST8 EXPRESSION TAG SEQADV 2OA4 HIS A 99 UNP Q5LST8 EXPRESSION TAG SEQADV 2OA4 HIS A 100 UNP Q5LST8 EXPRESSION TAG SEQADV 2OA4 HIS A 101 UNP Q5LST8 EXPRESSION TAG

SEQRES 1 A 101 MET MET PHE LEU ARG LYS VAL GLU GLY PRO ARG SER VAL SEQRES 2 A 101 THR LEU PRO ASP GLY SER ILE MET THR ARG ALA ASP LEU SEQRES 3 A 101 PRO PRO ALA ASN THR ARG ARG TRP VAL ALA SER ARG LYS SEQRES 4 A 101 ILE ALA VAL VAL ARG GLY VAL ILE TYR GLY LEU ILE THR SEQRES 5 A 101 LEU ALA GLU ALA LYS GLN THR TYR GLY LEU SER ASP GLU SEQRES 6 A 101 GLU PHE ASN SER TRP VAL SER ALA LEU ALA GLU HIS GLY SEQRES 7 A 101 LYS ASP ALA LEU LYS VAL THR ALA LEU LYS LYS TYR ARG SEQRES 8 A 101 GLN LEU LEU GLU HIS HIS HIS HIS HIS HIS

HELIX 1 1 VAL A 35 GLY A 49 1 15 HELIX 2 2 THR A 52 THR A 59 1 8 HELIX 3 3 SER A 63 GLU A 76 1 14 HELIX 4 4 VAL A 84 LEU A 93 1 10

SHEET 1 A 2 SER A 12 THR A 14 0 SHEET 2 A 2 ILE A 20 THR A 22 -1 O MET A 21 N VAL A 13

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000