10 20 30 40 50 60 70 80 2O1E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 28-NOV-06 2O1E
TITLE CRYSTAL STRUCTURE OF THE METAL-DEPENDENT LIPOPROTEIN YCDH TITLE 2 FROM BACILLUS SUBTILIS, NORTHEAST STRUCTURAL GENOMICS TITLE 3 TARGET SR583
COMPND MOL_ID: 1; COMPND 2 MOLECULE: YCDH; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 22-319; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 STRAIN: 168; SOURCE 5 GENE: YCDH, LOCUS_TAG=BSU02850; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21
KEYWDS ALPHA-BETA PROTEIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION
EXPDTA X-RAY DIFFRACTION
AUTHOR F.FOROUHAR,W.ZHOU,J.SEETHARAMAN,C.X.CHEN,Y.FANG, AUTHOR 2 K.CUNNINGHAM,L.-C.MA,H.JANJUA,R.XIAO,M.C.BARAN,J.LIU, AUTHOR 3 T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG,NORTHEAST AUTHOR 4 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2O1E 1 VERSN REVDAT 1 12-DEC-06 2O1E 0
JRNL AUTH F.FOROUHAR,W.ZHOU,J.SEETHARAMAN,C.X.CHEN,Y.FANG, JRNL AUTH 2 K.CUNNINGHAM,L.-C.MA,H.JANJUA,R.XIAO,M.C.BARAN, JRNL AUTH 3 J.LIU,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL CRYSTAL STRUCTURE OF THE METAL-DEPENDENT JRNL TITL 2 LIPOPROTEIN YCDH FROM BACILLUS SUBTILIS, NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS TARGET SR583 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.93 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 162118.170 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 81.0 REMARK 3 NUMBER OF REFLECTIONS : 28076 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2696 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2711 REMARK 3 BIN R VALUE (WORKING SET) : 0.3450 REMARK 3 BIN FREE R VALUE : 0.3990 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 303 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4199 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 39.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 61.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 8.41000 REMARK 3 B22 (A**2) : -2.52000 REMARK 3 B33 (A**2) : -5.90000 REMARK 3 B12 (A**2) : 10.17000 REMARK 3 B13 (A**2) : 8.70000 REMARK 3 B23 (A**2) : 13.64000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.49 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.64 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.86 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : OVERALL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 35.31 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2O1E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE RCSB ID CODE IS RCSB040564.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35170 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 39.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 1.900 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.7 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.27700 REMARK 200 R SYM FOR SHELL (I) : 0.24800 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.220 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SOLVE/RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM TRIS-HCL, 40% PEG1K, 100 MM REMARK 280 MAGNESIUM ACETATE, AND 5 MM DTT, PH 7.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 291K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -4 REMARK 465 ALA A -3 REMARK 465 GLY A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 ASN A 3 REMARK 465 SER A 4 REMARK 465 SER A 5 REMARK 465 THR A 6 REMARK 465 LYS A 7 REMARK 465 GLY A 8 REMARK 465 SER A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 GLY A 14 REMARK 465 ASP A 15 REMARK 465 SER A 107 REMARK 465 GLU A 108 REMARK 465 GLU A 109 REMARK 465 GLU A 110 REMARK 465 HIS A 111 REMARK 465 GLU A 112 REMARK 465 GLU A 113 REMARK 465 HIS A 114 REMARK 465 ASP A 115 REMARK 465 HIS A 116 REMARK 465 GLY A 117 REMARK 465 GLU A 118 REMARK 465 HIS A 119 REMARK 465 GLU A 120 REMARK 465 HIS A 121 REMARK 465 SER A 122 REMARK 465 LYS A 298 REMARK 465 SER A 299 REMARK 465 LEU A 300 REMARK 465 GLU A 301 REMARK 465 HIS A 302 REMARK 465 HIS A 303 REMARK 465 HIS A 304 REMARK 465 HIS A 305 REMARK 465 HIS A 306 REMARK 465 HIS A 307 REMARK 465 MSE B -4 REMARK 465 ALA B -3 REMARK 465 GLY B -2 REMARK 465 ASP B -1 REMARK 465 PRO B 0 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 ASN B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 THR B 6 REMARK 465 LYS B 7 REMARK 465 GLY B 8 REMARK 465 SER B 9 REMARK 465 ALA B 10 REMARK 465 ASP B 11 REMARK 465 SER B 12 REMARK 465 LYS B 13 REMARK 465 GLY B 14 REMARK 465 ASP B 15 REMARK 465 SER B 107 REMARK 465 GLU B 108 REMARK 465 GLU B 109 REMARK 465 GLU B 110 REMARK 465 HIS B 111 REMARK 465 GLU B 112 REMARK 465 GLU B 113 REMARK 465 HIS B 114 REMARK 465 ASP B 115 REMARK 465 HIS B 116 REMARK 465 GLY B 117 REMARK 465 GLU B 118 REMARK 465 HIS B 119 REMARK 465 GLU B 120 REMARK 465 HIS B 121 REMARK 465 SER B 122 REMARK 465 HIS B 123 REMARK 465 VAL B 297 REMARK 465 LYS B 298 REMARK 465 SER B 299 REMARK 465 LEU B 300 REMARK 465 GLU B 301 REMARK 465 HIS B 302 REMARK 465 HIS B 303 REMARK 465 HIS B 304 REMARK 465 HIS B 305 REMARK 465 HIS B 306 REMARK 465 HIS B 307
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 22 -95.24 -73.57 REMARK 500 LYS A 35 -125.70 53.38 REMARK 500 SER A 46 77.18 -61.58 REMARK 500 SER A 47 16.09 170.41 REMARK 500 THR A 78 -1.07 -56.99 REMARK 500 HIS A 91 -147.24 -84.76 REMARK 500 ASP A 102 10.64 -61.51 REMARK 500 HIS A 128 42.29 -76.68 REMARK 500 HIS A 192 -152.05 -100.31 REMARK 500 THR A 193 23.53 -166.95 REMARK 500 ALA A 210 -139.40 -57.67 REMARK 500 ASP A 215 -70.77 -88.98 REMARK 500 VAL A 262 -79.71 -76.45 REMARK 500 LEU A 263 75.74 68.13 REMARK 500 LEU A 266 45.75 -70.03 REMARK 500 LEU A 278 112.95 -39.53 REMARK 500 ASP A 293 36.05 -67.86 REMARK 500 SER A 294 -37.41 -161.06 REMARK 500 LEU A 296 57.35 -90.49 REMARK 500 THR B 22 -94.99 -72.05 REMARK 500 LYS B 35 -125.62 52.87 REMARK 500 SER B 46 77.30 -62.02 REMARK 500 SER B 47 15.83 170.90 REMARK 500 THR B 78 -0.85 -58.11 REMARK 500 HIS B 91 -146.14 -85.92 REMARK 500 ASP B 102 10.41 -61.88 REMARK 500 HIS B 128 43.81 -67.35 REMARK 500 LEU B 131 25.70 -76.46 REMARK 500 ASN B 154 35.12 -93.86 REMARK 500 GLU B 187 135.45 -179.44 REMARK 500 PHE B 195 40.00 -96.84 REMARK 500 GLU B 201 -18.91 -49.38 REMARK 500 ILE B 209 -132.56 -102.33 REMARK 500 ALA B 210 -95.79 -134.88 REMARK 500 SER B 219 152.87 -49.96 REMARK 500 LYS B 227 -78.48 -44.27 REMARK 500 SER B 254 -93.60 -102.46 REMARK 500 VAL B 262 -91.38 -81.14 REMARK 500 LEU B 263 65.60 70.08 REMARK 500 LEU B 266 28.94 -59.42 REMARK 500 GLU B 267 -81.12 -92.02 REMARK 500 LEU B 278 108.83 -57.33 REMARK 500 ASP B 293 52.10 -67.24 REMARK 500 SER B 294 -34.67 173.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 24 0.09 SIDE_CHAIN REMARK 500 TYR A 280 0.07 SIDE_CHAIN REMARK 500 TYR B 24 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 267 OE2 REMARK 620 2 HOH A 411 O 136.5 REMARK 620 3 HIS A 128 NE2 91.7 103.5 REMARK 620 4 HIS A 51 NE2 104.9 113.9 95.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 401 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 267 OE2 REMARK 620 2 HIS B 128 NE2 111.9 REMARK 620 3 HIS B 51 NE2 94.8 94.8 REMARK 620 N 1 2
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 401
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SR583 RELATED DB: TARGETDB
DBREF 2O1E A 2 299 UNP O34966 O34966_BACSU 22 319 DBREF 2O1E B 2 299 UNP O34966 O34966_BACSU 22 319
SEQADV 2O1E MSE A -4 UNP O34966 CLONING ARTIFACT SEQADV 2O1E ALA A -3 UNP O34966 CLONING ARTIFACT SEQADV 2O1E GLY A -2 UNP O34966 CLONING ARTIFACT SEQADV 2O1E ASP A -1 UNP O34966 CLONING ARTIFACT SEQADV 2O1E PRO A 0 UNP O34966 CLONING ARTIFACT SEQADV 2O1E MSE A 1 UNP O34966 CLONING ARTIFACT SEQADV 2O1E MSE A 26 UNP O34966 MET 46 MODIFIED RESIDUE SEQADV 2O1E MSE A 76 UNP O34966 MET 96 MODIFIED RESIDUE SEQADV 2O1E MSE A 87 UNP O34966 MET 107 MODIFIED RESIDUE SEQADV 2O1E MSE A 104 UNP O34966 MET 124 MODIFIED RESIDUE SEQADV 2O1E MSE A 125 UNP O34966 MET 145 MODIFIED RESIDUE SEQADV 2O1E MSE A 284 UNP O34966 MET 304 MODIFIED RESIDUE SEQADV 2O1E LEU A 300 UNP O34966 EXPRESSION TAG SEQADV 2O1E GLU A 301 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 302 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 303 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 304 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 305 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 306 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS A 307 UNP O34966 EXPRESSION TAG SEQADV 2O1E MSE B -4 UNP O34966 CLONING ARTIFACT SEQADV 2O1E ALA B -3 UNP O34966 CLONING ARTIFACT SEQADV 2O1E GLY B -2 UNP O34966 CLONING ARTIFACT SEQADV 2O1E ASP B -1 UNP O34966 CLONING ARTIFACT SEQADV 2O1E PRO B 0 UNP O34966 CLONING ARTIFACT SEQADV 2O1E MSE B 1 UNP O34966 CLONING ARTIFACT SEQADV 2O1E MSE B 26 UNP O34966 MET 46 MODIFIED RESIDUE SEQADV 2O1E MSE B 76 UNP O34966 MET 96 MODIFIED RESIDUE SEQADV 2O1E MSE B 87 UNP O34966 MET 107 MODIFIED RESIDUE SEQADV 2O1E MSE B 104 UNP O34966 MET 124 MODIFIED RESIDUE SEQADV 2O1E MSE B 125 UNP O34966 MET 145 MODIFIED RESIDUE SEQADV 2O1E MSE B 284 UNP O34966 MET 304 MODIFIED RESIDUE SEQADV 2O1E LEU B 300 UNP O34966 EXPRESSION TAG SEQADV 2O1E GLU B 301 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 302 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 303 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 304 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 305 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 306 UNP O34966 EXPRESSION TAG SEQADV 2O1E HIS B 307 UNP O34966 EXPRESSION TAG
SEQRES 1 A 312 MSE ALA GLY ASP PRO MSE GLY ASN SER SER THR LYS GLY SEQRES 2 A 312 SER ALA ASP SER LYS GLY ASP LYS LEU HIS VAL VAL THR SEQRES 3 A 312 THR PHE TYR PRO MSE TYR GLU PHE THR LYS GLN ILE VAL SEQRES 4 A 312 LYS ASP LYS GLY ASP VAL ASP LEU LEU ILE PRO SER SER SEQRES 5 A 312 VAL GLU PRO HIS ASP TRP GLU PRO THR PRO LYS ASP ILE SEQRES 6 A 312 ALA ASN ILE GLN ASP ALA ASP LEU PHE VAL TYR ASN SER SEQRES 7 A 312 GLU TYR MSE GLU THR TRP VAL PRO SER ALA GLU LYS SER SEQRES 8 A 312 MSE GLY GLN GLY HIS ALA VAL PHE VAL ASN ALA SER LYS SEQRES 9 A 312 GLY ILE ASP LEU MSE GLU GLY SER GLU GLU GLU HIS GLU SEQRES 10 A 312 GLU HIS ASP HIS GLY GLU HIS GLU HIS SER HIS ALA MSE SEQRES 11 A 312 ASP PRO HIS VAL TRP LEU SER PRO VAL LEU ALA GLN LYS SEQRES 12 A 312 GLU VAL LYS ASN ILE THR ALA GLN ILE VAL LYS GLN ASP SEQRES 13 A 312 PRO ASP ASN LYS GLU TYR TYR GLU LYS ASN SER LYS GLU SEQRES 14 A 312 TYR ILE ALA LYS LEU GLN ASP LEU ASP LYS LEU TYR ARG SEQRES 15 A 312 THR THR ALA LYS LYS ALA GLU LYS LYS GLU PHE ILE THR SEQRES 16 A 312 GLN HIS THR ALA PHE GLY TYR LEU ALA LYS GLU TYR GLY SEQRES 17 A 312 LEU LYS GLN VAL PRO ILE ALA GLY LEU SER PRO ASP GLN SEQRES 18 A 312 GLU PRO SER ALA ALA SER LEU ALA LYS LEU LYS THR TYR SEQRES 19 A 312 ALA LYS GLU HIS ASN VAL LYS VAL ILE TYR PHE GLU GLU SEQRES 20 A 312 ILE ALA SER SER LYS VAL ALA ASP THR LEU ALA SER GLU SEQRES 21 A 312 ILE GLY ALA LYS THR GLU VAL LEU ASN THR LEU GLU GLY SEQRES 22 A 312 LEU SER LYS GLU GLU GLN ASP LYS GLY LEU GLY TYR ILE SEQRES 23 A 312 ASP ILE MSE LYS GLN ASN LEU ASP ALA LEU LYS ASP SER SEQRES 24 A 312 LEU LEU VAL LYS SER LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 312 MSE ALA GLY ASP PRO MSE GLY ASN SER SER THR LYS GLY SEQRES 2 B 312 SER ALA ASP SER LYS GLY ASP LYS LEU HIS VAL VAL THR SEQRES 3 B 312 THR PHE TYR PRO MSE TYR GLU PHE THR LYS GLN ILE VAL SEQRES 4 B 312 LYS ASP LYS GLY ASP VAL ASP LEU LEU ILE PRO SER SER SEQRES 5 B 312 VAL GLU PRO HIS ASP TRP GLU PRO THR PRO LYS ASP ILE SEQRES 6 B 312 ALA ASN ILE GLN ASP ALA ASP LEU PHE VAL TYR ASN SER SEQRES 7 B 312 GLU TYR MSE GLU THR TRP VAL PRO SER ALA GLU LYS SER SEQRES 8 B 312 MSE GLY GLN GLY HIS ALA VAL PHE VAL ASN ALA SER LYS SEQRES 9 B 312 GLY ILE ASP LEU MSE GLU GLY SER GLU GLU GLU HIS GLU SEQRES 10 B 312 GLU HIS ASP HIS GLY GLU HIS GLU HIS SER HIS ALA MSE SEQRES 11 B 312 ASP PRO HIS VAL TRP LEU SER PRO VAL LEU ALA GLN LYS SEQRES 12 B 312 GLU VAL LYS ASN ILE THR ALA GLN ILE VAL LYS GLN ASP SEQRES 13 B 312 PRO ASP ASN LYS GLU TYR TYR GLU LYS ASN SER LYS GLU SEQRES 14 B 312 TYR ILE ALA LYS LEU GLN ASP LEU ASP LYS LEU TYR ARG SEQRES 15 B 312 THR THR ALA LYS LYS ALA GLU LYS LYS GLU PHE ILE THR SEQRES 16 B 312 GLN HIS THR ALA PHE GLY TYR LEU ALA LYS GLU TYR GLY SEQRES 17 B 312 LEU LYS GLN VAL PRO ILE ALA GLY LEU SER PRO ASP GLN SEQRES 18 B 312 GLU PRO SER ALA ALA SER LEU ALA LYS LEU LYS THR TYR SEQRES 19 B 312 ALA LYS GLU HIS ASN VAL LYS VAL ILE TYR PHE GLU GLU SEQRES 20 B 312 ILE ALA SER SER LYS VAL ALA ASP THR LEU ALA SER GLU SEQRES 21 B 312 ILE GLY ALA LYS THR GLU VAL LEU ASN THR LEU GLU GLY SEQRES 22 B 312 LEU SER LYS GLU GLU GLN ASP LYS GLY LEU GLY TYR ILE SEQRES 23 B 312 ASP ILE MSE LYS GLN ASN LEU ASP ALA LEU LYS ASP SER SEQRES 24 B 312 LEU LEU VAL LYS SER LEU GLU HIS HIS HIS HIS HIS HIS
MODRES 2O1E MSE A 26 MET SELENOMETHIONINE MODRES 2O1E MSE A 76 MET SELENOMETHIONINE MODRES 2O1E MSE A 87 MET SELENOMETHIONINE MODRES 2O1E MSE A 104 MET SELENOMETHIONINE MODRES 2O1E MSE A 125 MET SELENOMETHIONINE MODRES 2O1E MSE A 284 MET SELENOMETHIONINE MODRES 2O1E MSE B 26 MET SELENOMETHIONINE MODRES 2O1E MSE B 76 MET SELENOMETHIONINE MODRES 2O1E MSE B 87 MET SELENOMETHIONINE MODRES 2O1E MSE B 104 MET SELENOMETHIONINE MODRES 2O1E MSE B 125 MET SELENOMETHIONINE MODRES 2O1E MSE B 284 MET SELENOMETHIONINE
HET MSE A 26 8 HET MSE A 76 8 HET MSE A 87 8 HET MSE A 104 8 HET MSE A 125 8 HET MSE A 284 8 HET MSE B 26 8 HET MSE B 76 8 HET MSE B 87 8 HET MSE B 104 8 HET MSE B 125 8 HET MSE B 284 8 HET MN A 401 1 HET MN B 401 1
HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION
FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 MN 2(MN 2+) FORMUL 5 HOH *35(H2 O)
HELIX 1 1 PHE A 23 LYS A 35 1 13 HELIX 2 2 THR A 56 ALA A 66 1 11 HELIX 3 3 TRP A 79 SER A 86 1 8 HELIX 4 4 HIS A 128 LEU A 131 5 4 HELIX 5 5 SER A 132 ASP A 151 1 20 HELIX 6 6 ASN A 154 LYS A 182 1 29 HELIX 7 7 PHE A 195 TYR A 202 1 8 HELIX 8 8 SER A 219 ALA A 230 1 12 HELIX 9 9 SER A 245 GLU A 255 1 11 HELIX 10 10 SER A 270 GLY A 277 1 8 HELIX 11 11 GLY A 279 LEU A 296 1 18 HELIX 12 12 PHE B 23 LYS B 35 1 13 HELIX 13 13 THR B 56 ALA B 66 1 11 HELIX 14 14 TRP B 79 SER B 86 1 8 HELIX 15 15 HIS B 128 LEU B 131 5 4 HELIX 16 16 SER B 132 ASP B 151 1 20 HELIX 17 17 ASN B 154 ALA B 183 1 30 HELIX 18 18 PHE B 195 TYR B 202 1 8 HELIX 19 19 SER B 219 THR B 228 1 10 HELIX 20 20 THR B 228 HIS B 233 1 6 HELIX 21 21 SER B 245 ALA B 253 1 9 HELIX 22 22 SER B 270 GLY B 277 1 8 HELIX 23 23 GLY B 279 LEU B 296 1 18
SHEET 1 A 4 GLY A 38 LEU A 42 0 SHEET 2 A 4 LEU A 17 THR A 21 1 N VAL A 19 O ASP A 39 SHEET 3 A 4 LEU A 68 TYR A 71 1 O VAL A 70 N VAL A 20 SHEET 4 A 4 VAL A 93 ASN A 96 1 O VAL A 95 N TYR A 71 SHEET 1 B 4 LYS A 205 PRO A 208 0 SHEET 2 B 4 GLU A 187 THR A 190 1 N PHE A 188 O LYS A 205 SHEET 3 B 4 VAL A 237 TYR A 239 1 O TYR A 239 N ILE A 189 SHEET 4 B 4 LYS A 259 GLU A 261 1 O GLU A 261 N ILE A 238 SHEET 1 C 4 GLY B 38 LEU B 42 0 SHEET 2 C 4 LEU B 17 THR B 21 1 N VAL B 19 O ASP B 39 SHEET 3 C 4 LEU B 68 TYR B 71 1 O VAL B 70 N VAL B 20 SHEET 4 C 4 VAL B 93 ASN B 96 1 O VAL B 95 N TYR B 71 SHEET 1 D 4 GLN B 206 PRO B 208 0 SHEET 2 D 4 PHE B 188 THR B 190 1 N PHE B 188 O VAL B 207 SHEET 3 D 4 VAL B 237 TYR B 239 1 O TYR B 239 N ILE B 189 SHEET 4 D 4 LYS B 259 GLU B 261 1 O LYS B 259 N ILE B 238
LINK C PRO A 25 N MSE A 26 1555 1555 1.33 LINK C MSE A 26 N TYR A 27 1555 1555 1.33 LINK C TYR A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N GLU A 77 1555 1555 1.33 LINK C SER A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N GLY A 88 1555 1555 1.33 LINK C LEU A 103 N MSE A 104 1555 1555 1.33 LINK C MSE A 104 N GLU A 105 1555 1555 1.33 LINK C ALA A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N ASP A 126 1555 1555 1.33 LINK C ILE A 283 N MSE A 284 1555 1555 1.33 LINK C MSE A 284 N LYS A 285 1555 1555 1.33 LINK MN MN A 401 OE2 GLU A 267 1555 1555 2.22 LINK MN MN A 401 O HOH A 411 1555 1555 2.46 LINK MN MN A 401 NE2 HIS A 128 1555 1555 2.12 LINK MN MN A 401 NE2 HIS A 51 1555 1555 2.10 LINK C PRO B 25 N MSE B 26 1555 1555 1.34 LINK C MSE B 26 N TYR B 27 1555 1555 1.33 LINK C TYR B 75 N MSE B 76 1555 1555 1.33 LINK C MSE B 76 N GLU B 77 1555 1555 1.33 LINK C SER B 86 N MSE B 87 1555 1555 1.33 LINK C MSE B 87 N GLY B 88 1555 1555 1.33 LINK C LEU B 103 N MSE B 104 1555 1555 1.33 LINK C MSE B 104 N GLU B 105 1555 1555 1.33 LINK C ALA B 124 N MSE B 125 1555 1555 1.33 LINK C MSE B 125 N ASP B 126 1555 1555 1.32 LINK C ILE B 283 N MSE B 284 1555 1555 1.33 LINK C MSE B 284 N LYS B 285 1555 1555 1.33 LINK MN MN B 401 OE2 GLU B 267 1555 1555 2.44 LINK MN MN B 401 NE2 HIS B 128 1555 1555 2.12 LINK MN MN B 401 NE2 HIS B 51 1555 1555 2.26
SITE 1 AC1 4 HIS A 51 HIS A 128 GLU A 267 HOH A 411 SITE 1 AC2 4 HIS B 51 HIS B 128 GLU B 267 HOH B 423
CRYST1 45.292 54.344 62.840 103.70 100.46 96.75 P 1 2
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022079 0.002614 0.004944 0.00000
SCALE2 0.000000 0.018530 0.005079 0.00000
SCALE3 0.000000 0.000000 0.016779 0.00000