10 20 30 40 50 60 70 80 2O1C - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 28-NOV-06 2O1C
TITLE STRUCTURE OF THE E. COLI DIHYDRONEOPTERIN TRIPHOSPHATE TITLE 2 PYROPHOSPHOHYDROLASE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DATP PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: HB101; SOURCE 5 GENE: NUDB, NTPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B
KEYWDS NUDIX NTP HYDROLASE NTP PYROPHOSPHOHYDROLASE MUTT DIHYDRONEOPTERIN KEYWDS 2 TRIPHOSPHATE PYROPHOSPHOHYDROLASE FOLATE BIOSYNTHESIS, HYDROLASE
EXPDTA X-RAY DIFFRACTION
AUTHOR S.B.GABELLI,M.A.BIANCHET,L.M.AMZEL
REVDAT 3 13-JUL-11 2O1C 1 VERSN REVDAT 2 24-FEB-09 2O1C 1 VERSN REVDAT 1 28-AUG-07 2O1C 0
JRNL AUTH S.B.GABELLI,M.A.BIANCHET,W.XU,C.A.DUNN,Z.D.NIU,L.M.AMZEL, JRNL AUTH 2 M.J.BESSMAN JRNL TITL STRUCTURE AND FUNCTION OF THE E. COLI DIHYDRONEOPTERIN JRNL TITL 2 TRIPHOSPHATE PYROPHOSPHATASE: A NUDIX ENZYME INVOLVED IN JRNL TITL 3 FOLATE BIOSYNTHESIS. JRNL REF STRUCTURE V. 15 1014 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17698004 JRNL DOI 10.1016/J.STR.2007.06.018
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.F.O'HANDLEY,D.N.FRICK,L.C.BULLIONS,A.S.MILDVAN,M.J.BESSMAN REMARK 1 TITL ESCHERICHIA COLI ORF17 CODES FOR A NUCLEOSIDE TRIPHOSPHATE REMARK 1 TITL 2 PYROPHOSPHOHYDROLASE MEMBER OF THE MUTT FAMILY OF PROTEINS. REMARK 1 TITL 3 CLONING, PURIFICATION, AND CHARACTERIZATION OF THE ENZYME. REMARK 1 REF J.BIOL.CHEM. V. 271 24649 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 8798731 REMARK 1 DOI 10.1074/JBC.271.40.24649 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.SUZUKI,G.M.BROWN REMARK 1 TITL THE BIOSYNTHESIS OF FOLIC ACID. XII. PURIFICATION AND REMARK 1 TITL 2 PROPERTIES OF DIHYDRONEOPTERIN TRIPHOSPHATE REMARK 1 TITL 3 PYROPHOSPHOHYDROLASE. REMARK 1 REF J.BIOL.CHEM. V. 249 2405 1974 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 4362677
REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 44933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4854 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6611 ; 1.237 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 573 ; 5.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;32.783 ;23.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 821 ;15.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2408 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3258 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 556 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 209 ; 0.414 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 78 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2999 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4715 ; 0.838 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2145 ; 1.411 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 2.132 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3530 2.4640 63.4410 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: -0.0395 REMARK 3 T33: -0.0086 T12: -0.0060 REMARK 3 T13: -0.0040 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2410 L22: 1.1599 REMARK 3 L33: 0.8666 L12: -0.2338 REMARK 3 L13: 0.2341 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0694 S13: 0.0543 REMARK 3 S21: 0.1719 S22: -0.0028 S23: -0.0468 REMARK 3 S31: -0.0266 S32: 0.0269 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7170 2.5370 57.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.0561 T22: -0.0416 REMARK 3 T33: 0.0049 T12: 0.0020 REMARK 3 T13: -0.0099 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.4338 L22: 0.9079 REMARK 3 L33: 0.5605 L12: 0.0370 REMARK 3 L13: 0.4277 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0458 S13: -0.0329 REMARK 3 S21: -0.1499 S22: -0.0076 S23: 0.0352 REMARK 3 S31: 0.0117 S32: 0.0429 S33: 0.0201 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 147 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0250 24.3060 88.5160 REMARK 3 T TENSOR REMARK 3 T11: -0.0017 T22: -0.0155 REMARK 3 T33: -0.1228 T12: -0.0190 REMARK 3 T13: 0.0127 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.2248 L22: 1.0498 REMARK 3 L33: 1.9704 L12: -0.1183 REMARK 3 L13: 0.5587 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.2229 S13: -0.1726 REMARK 3 S21: 0.1539 S22: -0.0136 S23: 0.0459 REMARK 3 S31: -0.2041 S32: 0.0748 S33: 0.0720 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 147 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5270 23.6680 79.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: 0.0026 REMARK 3 T33: -0.1120 T12: -0.0067 REMARK 3 T13: 0.0431 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.4696 L22: 1.3923 REMARK 3 L33: 0.7792 L12: -0.2785 REMARK 3 L13: 0.2541 L23: -0.1134 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0485 S13: -0.0403 REMARK 3 S21: -0.0290 S22: -0.0658 S23: 0.0124 REMARK 3 S31: 0.0287 S32: -0.0334 S33: 0.0727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS
REMARK 4 REMARK 4 2O1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE RCSB ID CODE IS RCSB040562.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-97; 08-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 100; 298 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X4A; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 1.541 REMARK 200 MONOCHROMATOR : MIRRORS; GRAPHITE REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI; RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 95.945 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3-1.5 AMMONIUM SULFATE, 1% PROPANOL, REMARK 280 3-5 MM DTT, 4MM SODIUM PYROPHOSPHATE, 100MM NA HEPES PH 6.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.05200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.28950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.05200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.28950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 150 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASP C 3 REMARK 465 LYS C 4 REMARK 465 VAL C 5 REMARK 465 ASN C 148 REMARK 465 ALA C 149 REMARK 465 ALA C 150 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASP D 3 REMARK 465 LYS D 4 REMARK 465 VAL D 5 REMARK 465 TYR D 6 REMARK 465 ALA D 149 REMARK 465 ALA D 150
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 139 O HOH D 151 2.08 REMARK 500 O HOH C 199 O HOH C 271 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 A 165 O4 SO4 A 165 2556 1.20 REMARK 500 O2 SO4 A 165 O3 SO4 A 165 2556 1.23 REMARK 500 S SO4 A 165 S SO4 A 165 2556 1.29 REMARK 500 O1 SO4 A 165 O4 SO4 A 165 2556 1.41 REMARK 500 S SO4 A 165 O2 SO4 A 165 2556 1.51 REMARK 500 O4 SO4 A 165 O4 SO4 A 165 2556 1.59 REMARK 500 O2 SO4 A 165 O4 SO4 A 165 2556 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 27.88 -78.96 REMARK 500 PRO B 9 31.72 -83.89 REMARK 500 PRO C 9 35.67 -84.65 REMARK 500 LYS C 22 13.05 58.22 REMARK 500 GLN C 69 57.40 -99.93 REMARK 500 PRO D 9 43.20 -78.52 REMARK 500 SER D 38 -167.15 -79.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 255 DISTANCE = 5.46 ANGSTROMS REMARK 525 HOH C 277 DISTANCE = 5.07 ANGSTROMS REMARK 525 HOH D 245 DISTANCE = 5.51 ANGSTROMS
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV C 163
DBREF 2O1C A 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C B 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C C 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C D 1 150 UNP P0AFC0 NUDB_ECOLI 1 150
SEQRES 1 A 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 A 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 A 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 A 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 A 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 A 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 A 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 A 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 A 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 A 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 A 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 A 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 B 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 B 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 B 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 B 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 B 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 B 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 B 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 B 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 B 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 B 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 B 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 B 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 C 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 C 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 C 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 C 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 C 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 C 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 C 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 C 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 C 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 C 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 C 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 C 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 D 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 D 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 D 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 D 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 D 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 D 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 D 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 D 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 D 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 D 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 D 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 D 150 GLN PHE VAL ILE ASN ALA ALA
HET SO4 A 164 5 HET SO4 A 165 5 HET PPV A 163 9 HET SO4 B 164 5 HET SO4 B 163 5 HET PPV B 165 9 HET PPV C 163 9
HETNAM SO4 SULFATE ION HETNAM PPV PYROPHOSPHATE
FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 PPV 3(H4 O7 P2) FORMUL 12 HOH *611(H2 O)
HELIX 1 1 THR A 48 THR A 62 1 15 HELIX 2 2 ASP A 64 GLN A 69 1 6 HELIX 3 3 PHE A 84 TYR A 91 5 8 HELIX 4 4 ALA A 126 THR A 133 1 8 HELIX 5 5 SER A 135 VAL A 146 1 12 HELIX 6 6 THR B 48 THR B 62 1 15 HELIX 7 7 PHE B 84 TYR B 91 5 8 HELIX 8 8 ALA B 126 THR B 133 1 8 HELIX 9 9 SER B 135 VAL B 146 1 12 HELIX 10 10 THR C 48 THR C 62 1 15 HELIX 11 11 PHE C 84 TYR C 91 5 8 HELIX 12 12 ASP C 125 THR C 133 1 9 HELIX 13 13 SER C 135 VAL C 146 1 12 HELIX 14 14 THR D 48 THR D 62 1 15 HELIX 15 15 PHE D 84 TYR D 91 5 8 HELIX 16 16 ALA D 126 THR D 133 1 8 HELIX 17 17 SER D 135 VAL D 146 1 12
SHEET 1 A 4 VAL A 39 SER A 42 0 SHEET 2 A 4 VAL A 10 ALA A 18 -1 N VAL A 14 O VAL A 39 SHEET 3 A 4 ARG A 97 LEU A 107 1 O THR A 99 N SER A 11 SHEET 4 A 4 LEU A 72 GLU A 82 -1 N PHE A 81 O ASN A 98 SHEET 1 B 3 TRP A 36 GLN A 37 0 SHEET 2 B 3 ARG A 23 GLN A 28 -1 N LEU A 27 O GLN A 37 SHEET 3 B 3 TYR A 121 ASP A 125 -1 O LEU A 124 N VAL A 24 SHEET 1 C 4 VAL B 39 SER B 42 0 SHEET 2 C 4 VAL B 10 ALA B 18 -1 N VAL B 14 O VAL B 39 SHEET 3 C 4 ARG B 97 LEU B 107 1 O THR B 99 N SER B 11 SHEET 4 C 4 LEU B 72 GLU B 82 -1 N PHE B 81 O ASN B 98 SHEET 1 D 3 TRP B 36 GLN B 37 0 SHEET 2 D 3 ARG B 23 GLN B 28 -1 N LEU B 27 O GLN B 37 SHEET 3 D 3 TYR B 121 ASP B 125 -1 O LEU B 124 N VAL B 24 SHEET 1 E 4 VAL C 39 SER C 42 0 SHEET 2 E 4 VAL C 10 ALA C 18 -1 N VAL C 14 O VAL C 39 SHEET 3 E 4 ARG C 97 LEU C 107 1 O THR C 99 N SER C 11 SHEET 4 E 4 LEU C 72 GLU C 82 -1 N VAL C 79 O GLU C 100 SHEET 1 F 3 TRP C 36 GLN C 37 0 SHEET 2 F 3 VAL C 24 GLN C 28 -1 N LEU C 27 O GLN C 37 SHEET 3 F 3 ALA C 120 LEU C 124 -1 O LEU C 124 N VAL C 24 SHEET 1 G 4 VAL D 39 SER D 42 0 SHEET 2 G 4 VAL D 10 ALA D 18 -1 N VAL D 14 O VAL D 39 SHEET 3 G 4 ARG D 97 LEU D 107 1 O THR D 99 N SER D 11 SHEET 4 G 4 LEU D 72 GLU D 82 -1 N PHE D 81 O ASN D 98 SHEET 1 H 3 TRP D 36 GLN D 37 0 SHEET 2 H 3 ARG D 23 ARG D 29 -1 N LEU D 27 O GLN D 37 SHEET 3 H 3 HIS D 118 ASP D 125 -1 O LEU D 124 N VAL D 24
SITE 1 AC1 6 LYS A 4 LYS A 7 ARG A 30 ARG A 90 SITE 2 AC1 6 HOH A 190 HOH A 253 SITE 1 AC2 6 PHE A 81 GLU A 82 ARG A 97 TRP A 136 SITE 2 AC2 6 HOH A 169 HOH A 191 SITE 1 AC3 3 LYS B 4 LYS B 7 ARG B 90 SITE 1 AC4 11 PHE B 81 GLU B 82 ARG B 97 TRP B 136 SITE 2 AC4 11 HOH B 169 PHE C 81 GLU C 82 ARG C 97 SITE 3 AC4 11 TRP C 136 HOH C 181 HOH C 182 SITE 1 AC5 10 LYS A 7 ARG A 29 THR A 40 GLY A 41 SITE 2 AC5 10 SER A 42 GLU A 56 HOH A 194 HOH A 198 SITE 3 AC5 10 HOH A 238 HOH A 282 SITE 1 AC6 8 LYS B 7 ARG B 29 THR B 40 GLY B 41 SITE 2 AC6 8 SER B 42 GLU B 56 HOH B 209 HOH B 315 SITE 1 AC7 10 LYS C 7 THR C 40 GLY C 41 SER C 42 SITE 2 AC7 10 GLU C 56 ARG C 90 HOH C 177 HOH C 245 SITE 3 AC7 10 HOH C 272 HOH C 274
CRYST1 124.104 42.579 106.467 90.00 115.69 90.00 C 1 2 1 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.008058 0.000000 0.003876 0.00000
SCALE2 0.000000 0.023486 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010423 0.00000