2O0S - Header Asymmetric Unit

HEADER DE NOVO PROTEIN 28-NOV-06 2O0S

TITLE LPS-BOUND STRUCTURE OF A DESIGNED PEPTIDE

COMPND MOL_ID: 1; COMPND 2 MOLECULE: YW12; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE HAS BEEN CHEMICALLY SOURCE 4 SYNTHESIZED.

KEYWDS LPS, PEPTIDE DESIGN, DE NOVO PROTEIN

EXPDTA SOLUTION NMR

NUMMDL 9

AUTHOR S.BHATTACHARJYA

REVDAT 3 24-FEB-09 2O0S 1 VERSN REVDAT 2 29-MAY-07 2O0S 1 JRNL REVDAT 1 15-MAY-07 2O0S 0

JRNL AUTH S.BHATTACHARJYA,P.N.DOMADIA,A.BHUNIA,S.MALLADI, JRNL AUTH 2 S.A.DAVID JRNL TITL HIGH-RESOLUTION SOLUTION STRUCTURE OF A DESIGNED JRNL TITL 2 PEPTIDE BOUND TO LIPOPOLYSACCHARIDE: TRANSFERRED JRNL TITL 3 NUCLEAR OVERHAUSER EFFECTS, MICELLE SELECTIVITY, JRNL TITL 4 AND ANTI-ENDOTOXIC ACTIVITY JRNL REF BIOCHEMISTRY V. 46 5864 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17469802 JRNL DOI 10.1021/BI6025159

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DYANA 1.5 REMARK 3 AUTHORS : GUENTERT, P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2O0S COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040542.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 290 REMARK 210 PH : 4.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1MM PEPTIDE CONTAIN REMARK 210 LIPOPOLYSACCHARIDE TO DETECT REMARK 210 TR-NOE(PH 4.8); 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : TR-NOESY, 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 9 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW ENERGY STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 2 -148.03 -60.82 REMARK 500 1 ARG A 6 -72.67 -45.03 REMARK 500 1 LYS A 7 -30.94 -151.64 REMARK 500 1 ILE A 10 -63.46 -23.85 REMARK 500 2 VAL A 2 -148.13 -60.75 REMARK 500 2 ARG A 6 -73.12 -45.41 REMARK 500 2 LYS A 7 -30.55 -151.99 REMARK 500 2 ILE A 10 -61.84 -25.33 REMARK 500 3 VAL A 2 -148.12 -60.82 REMARK 500 3 ARG A 6 -72.68 -45.24 REMARK 500 3 LYS A 7 -31.90 -151.03 REMARK 500 3 ILE A 10 -62.67 -24.48 REMARK 500 4 VAL A 2 -147.87 -60.91 REMARK 500 4 ARG A 6 -70.26 -51.55 REMARK 500 4 LYS A 7 -29.03 -149.11 REMARK 500 4 ILE A 10 -61.98 -24.94 REMARK 500 5 VAL A 2 -147.89 -60.86 REMARK 500 5 ARG A 6 -70.36 -51.73 REMARK 500 5 LYS A 7 -28.77 -149.00 REMARK 500 5 ILE A 10 -61.71 -25.29 REMARK 500 6 VAL A 2 -147.87 -60.92 REMARK 500 6 ARG A 6 -70.37 -51.72 REMARK 500 6 LYS A 7 -28.84 -148.95 REMARK 500 6 ILE A 10 -61.79 -25.20 REMARK 500 7 VAL A 2 -148.06 -60.79 REMARK 500 7 ARG A 6 -80.91 -48.81 REMARK 500 7 ILE A 10 -62.43 -24.63 REMARK 500 8 VAL A 2 -148.15 -61.13 REMARK 500 8 ARG A 6 -80.63 -46.07 REMARK 500 8 ILE A 10 -57.31 -27.68 REMARK 500 9 VAL A 2 -148.07 -60.62 REMARK 500 9 ARG A 6 -80.84 -48.36 REMARK 500 9 ILE A 10 -62.57 -24.42 REMARK 500 REMARK 500 REMARK: NULL

DBREF 2O0S A 1 12 PDB 2O0S 2O0S 1 12

SEQRES 1 A 12 TYR VAL LEU TRP LYS ARG LYS ARG MET ILE PHE ILE

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000