10 20 30 40 50 60 70 80 2NYZ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER VIRAL PROTEIN/CYTOKINE 21-NOV-06 2NYZ
TITLE VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE TITLE 2 GAMMAHERPESVIRUS68 IN COMPLEX WITH THE C- CHEMOKINE XCL1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN GAMMAHV.M3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M3 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYMPHOTACTIN; COMPND 8 CHAIN: D, E; COMPND 9 SYNONYM: XCL1, CYTOKINE SCM-1, ATAC, LYMPHOTAXIN, SCM-1- COMPND 10 ALPHA, SMALL INDUCIBLE CYTOKINE C1, XC CHEMOKINE LIGAND 1; COMPND 11 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: MURINE HERPESVIRUS 68; SOURCE 4 ORGANISM_TAXID: 33708; SOURCE 5 GENE: GAMMAHV.M3, M3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFB-1; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SOURCE 15 SEQUENCE OF THE PEPTIDE CAN BE NATURALLY FOUND IN HOMO SOURCE 16 SAPIENS (HUMAN).
KEYWDS VIRAL DECOY RECEPTOR, CHEMOKINE, PROTEIN-PROTEIN COMPLEX, KEYWDS 2 VIRAL PROTEIN/CYTOKINE COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.M.ALEXANDER-BRETT,D.H.FREMONT
REVDAT 3 24-FEB-09 2NYZ 1 VERSN REVDAT 2 12-FEB-08 2NYZ 1 JRNL REVDAT 1 25-DEC-07 2NYZ 0
JRNL AUTH J.M.ALEXANDER-BRETT,D.H.FREMONT JRNL TITL DUAL GPCR AND GAG MIMICRY BY THE M3 CHEMOKINE JRNL TITL 2 DECOY RECEPTOR. JRNL REF J.EXP.MED. V. 204 3157 2007 JRNL REFN ISSN 0022-1007 JRNL PMID 18070938 JRNL DOI 10.1084/JEM.20071677
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 588744.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 35559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4850 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 280 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.94000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -18.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.40 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.96 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.410 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.170 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.920 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.950 ; 5.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 36.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2NYZ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040477.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.01000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ML0 REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100 MM TRIS, PH 6.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 145.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 145.47000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 145.47000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS BIOLOGICAL UNIT (2 MONOMERS)
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 LEU B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 VAL D 1 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 GLU D 4 REMARK 465 VAL D 5 REMARK 465 SER D 6 REMARK 465 ASN D 68 REMARK 465 THR D 69 REMARK 465 ARG D 70 REMARK 465 ASN D 71 REMARK 465 ASN D 72 REMARK 465 MET D 73 REMARK 465 ILE D 74 REMARK 465 GLN D 75 REMARK 465 THR D 76 REMARK 465 LYS D 77 REMARK 465 PRO D 78 REMARK 465 THR D 79 REMARK 465 GLY D 80 REMARK 465 THR D 81 REMARK 465 GLN D 82 REMARK 465 GLN D 83 REMARK 465 SER D 84 REMARK 465 THR D 85 REMARK 465 ASN D 86 REMARK 465 THR D 87 REMARK 465 ALA D 88 REMARK 465 VAL D 89 REMARK 465 THR D 90 REMARK 465 LEU D 91 REMARK 465 THR D 92 REMARK 465 GLY D 93 REMARK 465 VAL E 1 REMARK 465 GLY E 2 REMARK 465 SER E 3 REMARK 465 GLU E 4 REMARK 465 VAL E 5 REMARK 465 SER E 6 REMARK 465 MET E 73 REMARK 465 ILE E 74 REMARK 465 GLN E 75 REMARK 465 THR E 76 REMARK 465 LYS E 77 REMARK 465 PRO E 78 REMARK 465 THR E 79 REMARK 465 GLY E 80 REMARK 465 THR E 81 REMARK 465 GLN E 82 REMARK 465 GLN E 83 REMARK 465 SER E 84 REMARK 465 THR E 85 REMARK 465 ASN E 86 REMARK 465 THR E 87 REMARK 465 ALA E 88 REMARK 465 VAL E 89 REMARK 465 THR E 90 REMARK 465 LEU E 91 REMARK 465 THR E 92 REMARK 465 GLY E 93
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 95.23 -52.21 REMARK 500 ALA A 40 -119.98 -134.40 REMARK 500 THR A 42 41.24 -85.75 REMARK 500 LYS A 57 -78.39 -86.69 REMARK 500 ASP A 103 -145.70 -86.36 REMARK 500 GLU A 121 -76.34 -65.56 REMARK 500 PHE A 146 151.68 179.70 REMARK 500 TYR A 150 45.16 -142.67 REMARK 500 SER A 202 136.37 -32.41 REMARK 500 CYS A 218 48.44 -106.69 REMARK 500 ASP A 233 -0.57 -57.79 REMARK 500 CYS A 235 68.91 -117.33 REMARK 500 THR A 236 -159.60 -117.99 REMARK 500 PHE A 250 -169.60 54.86 REMARK 500 THR A 304 99.50 -18.02 REMARK 500 HIS A 305 136.84 -33.40 REMARK 500 GLU A 306 -169.58 -110.31 REMARK 500 PRO A 311 25.36 -54.87 REMARK 500 SER A 312 105.87 -54.80 REMARK 500 ASP A 326 32.14 72.47 REMARK 500 SER A 334 45.57 -104.81 REMARK 500 GLU A 335 -73.76 -29.63 REMARK 500 LYS B 27 102.81 -43.02 REMARK 500 ALA B 40 -123.74 -112.04 REMARK 500 THR B 45 -71.32 -43.01 REMARK 500 ASP B 103 -156.10 -95.66 REMARK 500 THR B 132 -164.02 -103.88 REMARK 500 PHE B 146 146.44 -172.86 REMARK 500 MET B 151 138.29 -178.21 REMARK 500 ILE B 156 147.41 -175.71 REMARK 500 ASP B 164 -170.66 -170.68 REMARK 500 SER B 202 141.00 -34.40 REMARK 500 CYS B 218 33.10 -99.64 REMARK 500 SER B 303 -0.77 -58.46 REMARK 500 GLU B 335 -86.28 -58.61 REMARK 500 SER D 22 30.06 -81.16 REMARK 500 ARG D 23 1.20 -155.57 REMARK 500 THR D 26 -167.45 -125.09 REMARK 500 THR D 28 132.43 -174.32 REMARK 500 SER D 33 -75.23 -69.15 REMARK 500 LEU D 45 134.24 1.41 REMARK 500 ARG E 70 43.13 -87.79 REMARK 500 ASN E 71 71.24 -155.55 REMARK 500 REMARK 500 REMARK: NULL
REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 396 DISTANCE = 5.58 ANGSTROMS REMARK 525 HOH A 403 DISTANCE = 5.11 ANGSTROMS REMARK 525 HOH B 465 DISTANCE = 5.11 ANGSTROMS
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MKF RELATED DB: PDB REMARK 900 VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE REMARK 900 GAMMAHERPESVIRUS 68 REMARK 900 RELATED ID: 1ML0 RELATED DB: PDB REMARK 900 VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE REMARK 900 GAMMAHERPESVIRUS68 IN COMPLEX WITH THE P8A VARIANT OF CC- REMARK 900 CHEMOKINE MCP-1 REMARK 900 RELATED ID: 2NZ1 RELATED DB: PDB
DBREF 2NYZ A 1 382 UNP O41925 O41925_MHV68 25 406 DBREF 2NYZ B 1 382 UNP O41925 O41925_MHV68 25 406 DBREF 2NYZ D 1 93 UNP P47992 XCL1_HUMAN 22 114 DBREF 2NYZ E 1 93 UNP P47992 XCL1_HUMAN 22 114
SEQRES 1 A 382 LEU THR LEU GLY LEU ALA PRO ALA LEU SER THR HIS SER SEQRES 2 A 382 SER GLY VAL SER THR GLN SER VAL ASP LEU SER GLN ILE SEQRES 3 A 382 LYS ARG GLY ASP GLU ILE GLN ALA HIS CYS LEU THR PRO SEQRES 4 A 382 ALA GLU THR GLU VAL THR GLU CYS ALA GLY ILE LEU LYS SEQRES 5 A 382 ASP VAL LEU SER LYS ASN LEU HIS GLU LEU GLN GLY LEU SEQRES 6 A 382 CYS ASN VAL LYS ASN LYS MET GLY VAL PRO TRP VAL SER SEQRES 7 A 382 VAL GLU GLU LEU GLY GLN GLU ILE ILE THR GLY ARG LEU SEQRES 8 A 382 PRO PHE PRO SER VAL GLY GLY THR PRO VAL ASN ASP LEU SEQRES 9 A 382 VAL ARG VAL LEU VAL VAL ALA GLU SER ASN THR PRO GLU SEQRES 10 A 382 GLU THR PRO GLU GLU GLU PHE TYR ALA TYR VAL GLU LEU SEQRES 11 A 382 GLN THR GLU LEU TYR THR PHE GLY LEU SER ASP ASP ASN SEQRES 12 A 382 VAL VAL PHE THR SER ASP TYR MET THR VAL TRP MET ILE SEQRES 13 A 382 ASP ILE PRO LYS SER TYR VAL ASP VAL GLY MET LEU THR SEQRES 14 A 382 ARG ALA THR PHE LEU GLU GLN TRP PRO GLY ALA LYS VAL SEQRES 15 A 382 THR VAL MET ILE PRO TYR SER SER THR PHE THR TRP CYS SEQRES 16 A 382 GLY GLU LEU GLY ALA ILE SER GLU GLU SER ALA PRO GLN SEQRES 17 A 382 PRO SER LEU SER ALA ARG SER PRO VAL CYS LYS ASN SER SEQRES 18 A 382 ALA ARG TYR SER THR SER LYS PHE CYS GLU VAL ASP GLY SEQRES 19 A 382 CYS THR ALA GLU THR GLY MET GLU LYS MET SER LEU LEU SEQRES 20 A 382 THR PRO PHE GLY GLY PRO PRO GLN GLN ALA LYS MET ASN SEQRES 21 A 382 THR CYS PRO CYS TYR TYR LYS TYR SER VAL SER PRO LEU SEQRES 22 A 382 PRO ALA MET ASP HIS LEU ILE LEU ALA ASP LEU ALA GLY SEQRES 23 A 382 LEU ASP SER LEU THR SER PRO VAL TYR VAL MET ALA ALA SEQRES 24 A 382 TYR PHE ASP SER THR HIS GLU ASN PRO VAL ARG PRO SER SEQRES 25 A 382 SER LYS LEU TYR HIS CYS ALA LEU GLN MET THR SER HIS SEQRES 26 A 382 ASP GLY VAL TRP THR SER THR SER SER GLU GLN CYS PRO SEQRES 27 A 382 ILE ARG LEU VAL GLU GLY GLN SER GLN ASN VAL LEU GLN SEQRES 28 A 382 VAL ARG VAL ALA PRO THR SER MET PRO ASN LEU VAL GLY SEQRES 29 A 382 VAL SER LEU MET LEU GLU GLY GLN GLN TYR ARG LEU GLU SEQRES 30 A 382 TYR PHE GLY ASP HIS SEQRES 1 B 382 LEU THR LEU GLY LEU ALA PRO ALA LEU SER THR HIS SER SEQRES 2 B 382 SER GLY VAL SER THR GLN SER VAL ASP LEU SER GLN ILE SEQRES 3 B 382 LYS ARG GLY ASP GLU ILE GLN ALA HIS CYS LEU THR PRO SEQRES 4 B 382 ALA GLU THR GLU VAL THR GLU CYS ALA GLY ILE LEU LYS SEQRES 5 B 382 ASP VAL LEU SER LYS ASN LEU HIS GLU LEU GLN GLY LEU SEQRES 6 B 382 CYS ASN VAL LYS ASN LYS MET GLY VAL PRO TRP VAL SER SEQRES 7 B 382 VAL GLU GLU LEU GLY GLN GLU ILE ILE THR GLY ARG LEU SEQRES 8 B 382 PRO PHE PRO SER VAL GLY GLY THR PRO VAL ASN ASP LEU SEQRES 9 B 382 VAL ARG VAL LEU VAL VAL ALA GLU SER ASN THR PRO GLU SEQRES 10 B 382 GLU THR PRO GLU GLU GLU PHE TYR ALA TYR VAL GLU LEU SEQRES 11 B 382 GLN THR GLU LEU TYR THR PHE GLY LEU SER ASP ASP ASN SEQRES 12 B 382 VAL VAL PHE THR SER ASP TYR MET THR VAL TRP MET ILE SEQRES 13 B 382 ASP ILE PRO LYS SER TYR VAL ASP VAL GLY MET LEU THR SEQRES 14 B 382 ARG ALA THR PHE LEU GLU GLN TRP PRO GLY ALA LYS VAL SEQRES 15 B 382 THR VAL MET ILE PRO TYR SER SER THR PHE THR TRP CYS SEQRES 16 B 382 GLY GLU LEU GLY ALA ILE SER GLU GLU SER ALA PRO GLN SEQRES 17 B 382 PRO SER LEU SER ALA ARG SER PRO VAL CYS LYS ASN SER SEQRES 18 B 382 ALA ARG TYR SER THR SER LYS PHE CYS GLU VAL ASP GLY SEQRES 19 B 382 CYS THR ALA GLU THR GLY MET GLU LYS MET SER LEU LEU SEQRES 20 B 382 THR PRO PHE GLY GLY PRO PRO GLN GLN ALA LYS MET ASN SEQRES 21 B 382 THR CYS PRO CYS TYR TYR LYS TYR SER VAL SER PRO LEU SEQRES 22 B 382 PRO ALA MET ASP HIS LEU ILE LEU ALA ASP LEU ALA GLY SEQRES 23 B 382 LEU ASP SER LEU THR SER PRO VAL TYR VAL MET ALA ALA SEQRES 24 B 382 TYR PHE ASP SER THR HIS GLU ASN PRO VAL ARG PRO SER SEQRES 25 B 382 SER LYS LEU TYR HIS CYS ALA LEU GLN MET THR SER HIS SEQRES 26 B 382 ASP GLY VAL TRP THR SER THR SER SER GLU GLN CYS PRO SEQRES 27 B 382 ILE ARG LEU VAL GLU GLY GLN SER GLN ASN VAL LEU GLN SEQRES 28 B 382 VAL ARG VAL ALA PRO THR SER MET PRO ASN LEU VAL GLY SEQRES 29 B 382 VAL SER LEU MET LEU GLU GLY GLN GLN TYR ARG LEU GLU SEQRES 30 B 382 TYR PHE GLY ASP HIS SEQRES 1 D 93 VAL GLY SER GLU VAL SER ASP LYS ARG THR CYS VAL SER SEQRES 2 D 93 LEU THR THR GLN ARG LEU PRO VAL SER ARG ILE LYS THR SEQRES 3 D 93 TYR THR ILE THR GLU GLY SER LEU ARG ALA VAL ILE PHE SEQRES 4 D 93 ILE THR LYS ARG GLY LEU LYS VAL CYS ALA ASP PRO GLN SEQRES 5 D 93 ALA THR TRP VAL ARG ASP VAL VAL ARG SER MET ASP ARG SEQRES 6 D 93 LYS SER ASN THR ARG ASN ASN MET ILE GLN THR LYS PRO SEQRES 7 D 93 THR GLY THR GLN GLN SER THR ASN THR ALA VAL THR LEU SEQRES 8 D 93 THR GLY SEQRES 1 E 93 VAL GLY SER GLU VAL SER ASP LYS ARG THR CYS VAL SER SEQRES 2 E 93 LEU THR THR GLN ARG LEU PRO VAL SER ARG ILE LYS THR SEQRES 3 E 93 TYR THR ILE THR GLU GLY SER LEU ARG ALA VAL ILE PHE SEQRES 4 E 93 ILE THR LYS ARG GLY LEU LYS VAL CYS ALA ASP PRO GLN SEQRES 5 E 93 ALA THR TRP VAL ARG ASP VAL VAL ARG SER MET ASP ARG SEQRES 6 E 93 LYS SER ASN THR ARG ASN ASN MET ILE GLN THR LYS PRO SEQRES 7 E 93 THR GLY THR GLN GLN SER THR ASN THR ALA VAL THR LEU SEQRES 8 E 93 THR GLY
FORMUL 5 HOH *194(H2 O)
HELIX 1 1 ASP A 22 ILE A 26 5 5 HELIX 2 2 ARG A 28 CYS A 36 1 9 HELIX 3 3 VAL A 44 ASN A 58 1 15 HELIX 4 4 HIS A 60 CYS A 66 5 7 HELIX 5 5 GLU A 80 GLY A 83 5 4 HELIX 6 6 SER A 140 ASP A 142 5 3 HELIX 7 7 SER A 161 VAL A 163 5 3 HELIX 8 8 ASN A 220 THR A 226 5 7 HELIX 9 9 CYS A 262 SER A 269 1 8 HELIX 10 10 PRO A 356 MET A 359 5 4 HELIX 11 11 ASP B 22 ILE B 26 5 5 HELIX 12 12 ARG B 28 LEU B 37 1 10 HELIX 13 13 VAL B 44 ASN B 58 1 15 HELIX 14 14 HIS B 60 CYS B 66 5 7 HELIX 15 15 GLU B 80 GLY B 83 5 4 HELIX 16 16 SER B 140 ASP B 142 5 3 HELIX 17 17 SER B 161 VAL B 163 5 3 HELIX 18 18 ASN B 220 SER B 225 5 6 HELIX 19 19 THR B 226 LYS B 228 5 3 HELIX 20 20 PHE B 229 GLY B 234 1 6 HELIX 21 21 CYS B 262 SER B 269 1 8 HELIX 22 22 LEU B 287 LEU B 290 5 4 HELIX 23 23 PRO B 356 PRO B 360 5 5 HELIX 24 24 PRO D 20 ILE D 24 5 5 HELIX 25 25 ALA D 53 SER D 62 1 10 HELIX 26 26 MET D 63 SER D 67 5 5 HELIX 27 27 PRO E 20 SER E 22 5 3 HELIX 28 28 ALA E 53 ARG E 65 1 13
SHEET 1 A 7 GLY A 15 THR A 18 0 SHEET 2 A 7 VAL A 68 PRO A 75 -1 O LYS A 69 N SER A 17 SHEET 3 A 7 THR A 193 ILE A 201 1 O CYS A 195 N VAL A 68 SHEET 4 A 7 LYS A 181 PRO A 187 -1 N VAL A 182 O LEU A 198 SHEET 5 A 7 LEU A 104 GLU A 112 -1 N VAL A 110 O THR A 183 SHEET 6 A 7 MET A 151 PRO A 159 -1 O ILE A 156 N VAL A 107 SHEET 7 A 7 VAL A 144 SER A 148 -1 N VAL A 145 O VAL A 153 SHEET 1 B 5 VAL A 77 VAL A 79 0 SHEET 2 B 5 GLN A 84 GLY A 89 -1 O ILE A 86 N VAL A 77 SHEET 3 B 5 LEU A 168 PHE A 173 -1 O ALA A 171 N ILE A 87 SHEET 4 B 5 ALA A 126 GLN A 131 -1 N GLN A 131 O LEU A 168 SHEET 5 B 5 THR A 136 LEU A 139 -1 O PHE A 137 N LEU A 130 SHEET 1 C 6 SER A 212 PRO A 216 0 SHEET 2 C 6 GLN A 372 GLU A 377 1 O ARG A 375 N ALA A 213 SHEET 3 C 6 LEU A 362 LEU A 369 -1 N VAL A 365 O LEU A 376 SHEET 4 C 6 VAL A 294 PHE A 301 -1 N ALA A 299 O GLY A 364 SHEET 5 C 6 LEU A 315 HIS A 325 -1 O TYR A 316 N TYR A 300 SHEET 6 C 6 VAL A 328 SER A 331 -1 O THR A 330 N THR A 323 SHEET 1 D 5 MET A 244 LEU A 246 0 SHEET 2 D 5 GLN A 256 ASN A 260 -1 O MET A 259 N SER A 245 SHEET 3 D 5 LEU A 279 ALA A 285 -1 O ALA A 285 N GLN A 256 SHEET 4 D 5 VAL A 349 VAL A 354 -1 O VAL A 352 N ALA A 282 SHEET 5 D 5 ILE A 339 GLU A 343 -1 N ARG A 340 O ARG A 353 SHEET 1 E 2 LEU A 273 PRO A 274 0 SHEET 2 E 2 ARG D 9 THR D 10 -1 O THR D 10 N LEU A 273 SHEET 1 F 7 GLY B 15 THR B 18 0 SHEET 2 F 7 VAL B 68 PRO B 75 -1 O LYS B 69 N SER B 17 SHEET 3 F 7 PHE B 192 ILE B 201 1 O GLY B 199 N MET B 72 SHEET 4 F 7 LYS B 181 SER B 189 -1 N ILE B 186 O TRP B 194 SHEET 5 F 7 LEU B 104 GLU B 112 -1 N GLU B 112 O LYS B 181 SHEET 6 F 7 MET B 151 PRO B 159 -1 O ILE B 156 N VAL B 107 SHEET 7 F 7 VAL B 144 SER B 148 -1 N VAL B 145 O VAL B 153 SHEET 1 G 5 VAL B 77 VAL B 79 0 SHEET 2 G 5 GLN B 84 ARG B 90 -1 O ILE B 86 N VAL B 77 SHEET 3 G 5 LEU B 168 PHE B 173 -1 O PHE B 173 N GLU B 85 SHEET 4 G 5 ALA B 126 GLN B 131 -1 N TYR B 127 O THR B 172 SHEET 5 G 5 THR B 136 GLY B 138 -1 O PHE B 137 N LEU B 130 SHEET 1 H 6 SER B 212 PRO B 216 0 SHEET 2 H 6 GLN B 372 GLU B 377 1 O ARG B 375 N ALA B 213 SHEET 3 H 6 LEU B 362 LEU B 369 -1 N VAL B 365 O LEU B 376 SHEET 4 H 6 VAL B 294 PHE B 301 -1 N ALA B 299 O GLY B 364 SHEET 5 H 6 LEU B 315 HIS B 325 -1 O TYR B 316 N TYR B 300 SHEET 6 H 6 VAL B 328 THR B 332 -1 O VAL B 328 N HIS B 325 SHEET 1 I 5 MET B 244 LEU B 246 0 SHEET 2 I 5 ALA B 257 ASN B 260 -1 O MET B 259 N SER B 245 SHEET 3 I 5 LEU B 279 ALA B 285 -1 O ASP B 283 N LYS B 258 SHEET 4 I 5 VAL B 349 VAL B 354 -1 O VAL B 354 N LEU B 279 SHEET 5 I 5 ILE B 339 GLU B 343 -1 N ARG B 340 O ARG B 353 SHEET 1 J 2 LEU B 273 PRO B 274 0 SHEET 2 J 2 ARG E 9 THR E 10 -1 O THR E 10 N LEU B 273 SHEET 1 K 3 ILE D 29 THR D 30 0 SHEET 2 K 3 ALA D 36 THR D 41 -1 O ALA D 36 N THR D 30 SHEET 3 K 3 GLY D 44 ALA D 49 -1 O LEU D 45 N THR D 41 SHEET 1 L 3 ILE E 24 THR E 28 0 SHEET 2 L 3 VAL E 37 THR E 41 -1 O ILE E 40 N LYS E 25 SHEET 3 L 3 LYS E 46 ALA E 49 -1 O VAL E 47 N PHE E 39
SSBOND 1 CYS A 36 CYS A 47 1555 1555 2.04 SSBOND 2 CYS A 66 CYS A 195 1555 1555 2.04 SSBOND 3 CYS A 218 CYS A 264 1555 1555 2.04 SSBOND 4 CYS A 235 CYS A 262 1555 1555 2.04 SSBOND 5 CYS A 318 CYS A 337 1555 1555 2.05 SSBOND 6 CYS B 36 CYS B 47 1555 1555 2.03 SSBOND 7 CYS B 66 CYS B 195 1555 1555 2.04 SSBOND 8 CYS B 218 CYS B 264 1555 1555 2.03 SSBOND 9 CYS B 235 CYS B 262 1555 1555 2.04 SSBOND 10 CYS B 318 CYS B 337 1555 1555 2.04 SSBOND 11 CYS D 11 CYS D 48 1555 1555 2.04 SSBOND 12 CYS E 11 CYS E 48 1555 1555 2.03
CRYST1 84.370 103.190 290.940 90.00 90.00 90.00 I 21 21 21 16
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.011853 0.000000 0.000000 0.00000
SCALE2 0.000000 0.009691 0.000000 0.00000
SCALE3 0.000000 0.000000 0.003437 0.00000