10 20 30 40 50 60 70 80 2NY9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 20-NOV-06 2NY9
TITLE NMR STRUCTURE OF DEF-ABB, A MUTANT OF ANOPHELES DEFENSIN TITLE 2 DEF-AAA
COMPND MOL_ID: 1; COMPND 2 MOLECULE: DEFENSIN, MUTANT DEF-ABB; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: RESIDUES 63-102; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANOPHELES GAMBIAE; SOURCE 3 ORGANISM_COMMON: AFRICAN MALARIA MOSQUITO; SOURCE 4 ORGANISM_TAXID: 7165; SOURCE 5 GENE: DEF1; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID
KEYWDS INSECT DEFENSIN; CSAB MOTIF; ANTIBACTERIAL, ANTIMICROBIAL KEYWDS 2 PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR C.LANDON,F.BARBAULT,F.VOVELLE
REVDAT 3 24-FEB-09 2NY9 1 VERSN REVDAT 2 22-JUL-08 2NY9 1 JRNL REVDAT 1 13-NOV-07 2NY9 0
JRNL AUTH C.LANDON,F.BARBAULT,M.LEGRAIN,M.GUENNEUGUES, JRNL AUTH 2 F.VOVELLE JRNL TITL RATIONAL DESIGN OF PEPTIDES ACTIVE AGAINST THE JRNL TITL 2 GRAM POSITIVE BACTERIA STAPHYLOCOCCUS AUREUS JRNL REF PROTEINS V. 72 229 2008 JRNL REFN ISSN 0887-3585 JRNL PMID 18214975 JRNL DOI 10.1002/PROT.21912
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 765 NOE-DERIVED DISTANCE CONSTRAINTS
REMARK 4 REMARK 4 2NY9 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-DEC-06. REMARK 100 THE RCSB ID CODE IS RCSB040451.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 303 REMARK 210 PH : 4.9; 4.9 REMARK 210 IONIC STRENGTH : 40MM SODIUM ACETATE BUFFER; REMARK 210 40MM SODIUM ACETATE BUFFER REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM DEF-ABB; 40MM SODIUM REMARK 210 ACETATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : DQF-COSY, 2D TOCSY, 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 5.0, REMARK 210 ARIA 1.1, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING WITH REMARK 210 TORSION ANGLE SPACE (ARIA/CNS) REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY AND THE LEAST RESTRAINT REMARK 210 VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP X 4 -137.52 -153.01 REMARK 500 1 ALA X 6 33.46 -82.30 REMARK 500 1 VAL X 11 -35.85 -139.65 REMARK 500 1 ASP X 39 83.82 66.19 REMARK 500 2 CYS X 3 51.27 -155.19 REMARK 500 2 ALA X 6 -127.41 55.89 REMARK 500 2 SER X 7 51.90 -175.70 REMARK 500 2 PHE X 9 50.31 -96.96 REMARK 500 2 VAL X 11 -109.75 36.95 REMARK 500 2 ASP X 39 84.57 62.88 REMARK 500 3 ASP X 4 -133.65 -164.42 REMARK 500 3 LEU X 5 -33.70 -130.57 REMARK 500 3 ALA X 6 31.80 -97.03 REMARK 500 3 ARG X 26 39.54 -85.95 REMARK 500 3 ASP X 39 84.92 68.63 REMARK 500 4 LEU X 5 36.97 -91.69 REMARK 500 4 ALA X 6 -127.21 59.90 REMARK 500 4 SER X 7 55.37 -169.91 REMARK 500 4 PHE X 9 118.74 -168.46 REMARK 500 4 VAL X 11 -168.55 -65.81 REMARK 500 4 ASP X 39 -130.52 49.43 REMARK 500 5 CYS X 3 -135.62 66.51 REMARK 500 5 ALA X 6 45.08 -149.84 REMARK 500 5 SER X 7 50.80 -145.92 REMARK 500 5 VAL X 11 -33.73 69.43 REMARK 500 5 LYS X 33 -22.12 72.27 REMARK 500 5 ASP X 39 92.31 57.86 REMARK 500 6 SER X 7 40.18 -152.78 REMARK 500 6 ASP X 39 92.01 56.95 REMARK 500 7 CYS X 3 41.06 -158.70 REMARK 500 7 ASP X 4 46.55 -82.31 REMARK 500 7 LEU X 5 -40.48 71.49 REMARK 500 7 LEU X 15 37.20 -81.89 REMARK 500 7 CYS X 16 -47.20 -143.02 REMARK 500 7 ASP X 39 74.79 66.24 REMARK 500 8 THR X 2 -42.16 -155.16 REMARK 500 8 LEU X 5 -72.35 -139.57 REMARK 500 8 ALA X 6 35.71 170.52 REMARK 500 8 SER X 7 -151.93 56.11 REMARK 500 8 PHE X 9 44.00 -171.71 REMARK 500 8 VAL X 11 -50.92 67.22 REMARK 500 8 ASP X 39 120.10 59.73 REMARK 500 9 CYS X 3 29.74 -154.29 REMARK 500 9 LEU X 5 -47.85 71.48 REMARK 500 9 ALA X 6 71.68 -67.82 REMARK 500 9 SER X 7 -37.35 -142.38 REMARK 500 9 PHE X 9 49.75 -82.95 REMARK 500 9 TYR X 29 -170.90 -170.77 REMARK 500 9 ASP X 39 86.58 59.84 REMARK 500 10 ASP X 4 -149.11 -170.85 REMARK 500 10 PHE X 9 -132.84 -139.79 REMARK 500 10 VAL X 11 -133.34 39.41 REMARK 500 10 LYS X 33 -27.98 76.23 REMARK 500 10 ASP X 39 126.31 59.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NY8 RELATED DB: PDB REMARK 900 RELATED ID: 2NZ3 RELATED DB: PDB REMARK 900 RELATED ID: 2E3E RELATED DB: PDB REMARK 900 RELATED ID: 2E3F RELATED DB: PDB REMARK 900 RELATED ID: 2E3G RELATED DB: PDB
DBREF 2NY9 X 1 39 UNP Q17027 DEFI_ANOGA 63 102
SEQADV 2NY9 LEU X 21 UNP Q17027 ILE 83 ENGINEERED SEQADV 2NY9 VAL X 22 UNP Q17027 ALA 84 ENGINEERED SEQADV 2NY9 LYS X 23 UNP Q17027 ARG 85 ENGINEERED SEQADV 2NY9 GLY X 24 UNP Q17027 ARG 86 ENGINEERED SEQADV 2NY9 LYS X 31 UNP Q17027 ASN 93 ENGINEERED SEQADV 2NY9 ASN X 32 UNP Q17027 SER 94 ENGINEERED SEQADV 2NY9 X UNP Q17027 ALA 96 DELETION SEQADV 2NY9 ILE X 34 UNP Q17027 VAL 97 ENGINEERED SEQADV 2NY9 HIS X 36 UNP Q17027 VAL 99 ENGINEERED SEQADV 2NY9 ASP X 39 UNP Q17027 ASN 102 ENGINEERED SEQADV 2NY9 LYS X 40 UNP Q17027 ENGINEERED SEQADV 2NY9 PHE X 41 UNP Q17027 ENGINEERED
SEQRES 1 X 41 ALA THR CYS ASP LEU ALA SER GLY PHE GLY VAL GLY SER SEQRES 2 X 41 SER LEU CYS ALA ALA HIS CYS LEU VAL LYS GLY TYR ARG SEQRES 3 X 41 GLY GLY TYR CYS LYS ASN LYS ILE CYS HIS CYS ARG ASP SEQRES 4 X 41 LYS PHE
HELIX 1 1 GLY X 12 GLY X 24 1 13
SHEET 1 A 2 GLY X 28 LYS X 31 0 SHEET 2 A 2 ILE X 34 CYS X 37 -1 O HIS X 36 N TYR X 29
SSBOND 1 CYS X 3 CYS X 30 1555 1555 2.03 SSBOND 2 CYS X 16 CYS X 35 1555 1555 2.03 SSBOND 3 CYS X 20 CYS X 37 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000