2NQ4 - Header Asymmetric Unit

HEADER DNA 30-OCT-06 2NQ4

TITLE SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX

COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES

KEYWDS DEOXYRIBONUCLEIC ACID, DUPLEX, DODECAMER, DNA

EXPDTA SOLUTION NMR

NUMMDL 15

MDLTYP MINIMIZED AVERAGE

AUTHOR D.BHATTACHARYYA,Y.WU,S.CHANEY,S.CAMPBELL

REVDAT 2 24-FEB-09 2NQ4 1 VERSN REVDAT 1 12-JUN-07 2NQ4 0

JRNL AUTH Y.WU,D.BHATTACHARYYA,C.L.KING, JRNL AUTH 2 I.BASKERVILLE-ABRAHAM,S.-H.HUH,G.BOYSEN, JRNL AUTH 3 J.A.SWENBERG,B.TEMPLE,S.L.CAMPBELL,S.G.CHANEY JRNL TITL SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX WITH JRNL TITL 2 AND WITHOUT A CISPLATIN 1,2-D(GG) INTRASTRAND JRNL TITL 3 CROSS-LINK: COMPARISON WITH THE SAME DNA DUPLEX JRNL TITL 4 CONTAINING AN OXALIPLATIN 1,2-D(GG) INTRASTRAND JRNL TITL 5 CROSS-LINK JRNL REF BIOCHEMISTRY V. 46 6477 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17497831 JRNL DOI 10.1021/BI062291F

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2NQ4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-07. REMARK 100 THE RCSB ID CODE IS RCSB040165.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 275; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL, 5MM NAPI; 100MM REMARK 210 NACL, 5MM NAPI REMARK 210 PRESSURE : 1 ATM; 1 ATM REMARK 210 SAMPLE CONTENTS : 1.5 MM DNA, 100 MM NACL, 5 MM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 95% REMARK 210 H2O, 5% D2O; 1.5 MM DNA, 100 REMARK 210 MM NACL, 5 MM PHOSPHATE REMARK 210 BUFFER, PH 7.0, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY, 2D TOCSY, DQF-COSY, REMARK 210 2D 1H 31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES.

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DT A 3 C3' - C2' - C1' ANGL. DEV. = -4.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NPW RELATED DB: PDB REMARK 900 RELATED ID: 2NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 2NQ1 RELATED DB: PDB

DBREF 2NQ4 A 1 12 PDB 2NQ4 2NQ4 1 12 DBREF 2NQ4 B 13 24 PDB 2NQ4 2NQ4 13 24

SEQRES 1 A 12 DC DC DT DC DA DG DG DC DC DT DC DC SEQRES 1 B 12 DG DG DA DG DG DC DC DT DG DA DG DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000