10 20 30 40 50 60 70 80 2NLH - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ANTIMICROBIAL PROTEIN 20-OCT-06 2NLH
TITLE HUMAN BETA-DEFENSIN-1 (MUTANT GLN24ALA)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HUMAN BETA-DEFENSINS 1, RESIDUES 33-68; COMPND 5 SYNONYM: BD-1, DEFENSIN, BETA 1, HBD-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFB1, BD1, HBD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAED4
KEYWDS ANTIMICROBIAL, CHEMOTACTIC, DEFENSIN, MUTANT, ANTIMICROBIAL KEYWDS 2 PROTEIN
EXPDTA X-RAY DIFFRACTION
AUTHOR J.LUBKOWSKI,M.PAZGIER
REVDAT 4 24-FEB-09 2NLH 1 VERSN REVDAT 3 30-JAN-07 2NLH 1 JRNL REVDAT 2 19-DEC-06 2NLH 1 JRNL REVDAT 1 31-OCT-06 2NLH 0
JRNL AUTH M.PAZGIER,A.PRAHL,D.M.HOOVER,J.LUBKOWSKI JRNL TITL STUDIES OF THE BIOLOGICAL PROPERTIES OF HUMAN JRNL TITL 2 BETA-DEFENSIN 1. JRNL REF J.BIOL.CHEM. V. 282 1819 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17071614 JRNL DOI 10.1074/JBC.M607210200
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 12083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE SET COUNT : 36 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1076 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.92000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : 0.62000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.154 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.109 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.454 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.937 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1135 ; 0.019 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1530 ; 1.662 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ; 6.233 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;34.520 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 189 ;13.891 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;20.142 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 155 ; 0.113 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 812 ; 0.008 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 494 ; 0.239 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 775 ; 0.300 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 143 ; 0.191 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 110 ; 0.221 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 26 ; 0.154 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 738 ; 1.265 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1129 ; 1.973 ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 464 ; 2.742 ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 401 ; 3.906 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 36 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9202 7.7736 20.3556 REMARK 3 T TENSOR REMARK 3 T11: -0.1193 T22: -0.0634 REMARK 3 T33: -0.0753 T12: 0.0262 REMARK 3 T13: -0.0097 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.0945 L22: 0.3136 REMARK 3 L33: 0.0584 L12: 0.1007 REMARK 3 L13: 0.0713 L23: 0.0454 REMARK 3 S TENSOR REMARK 3 S11: 0.0109 S12: -0.0682 S13: -0.0477 REMARK 3 S21: -0.0161 S22: -0.0512 S23: -0.0218 REMARK 3 S31: -0.0061 S32: -0.0768 S33: 0.0403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2NLH COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-06. REMARK 100 THE RCSB ID CODE IS RCSB040009.
REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING-ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12097 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.50600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IJV REMARK 200 REMARK 200 REMARK: NULL
REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 293K
REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.38500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL
REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7, 8, 9 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -117.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 -1.000000 0.000000 0.000000 -13.00134 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 13.38500 REMARK 350 BIOMT3 1 0.000000 0.000000 -1.000000 58.16464 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 31.58866 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -13.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.16464 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 44.59000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 26.77000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -50.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 8 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -46.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 31.58866 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -13.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.16464 REMARK 350 REMARK 350 BIOMOLECULE: 9 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -13.00134 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 13.38500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 58.16464
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 241 O HOH C 268 2.14 REMARK 500 O HOH B 184 O HOH B 213 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 1 CB - CG - OD1 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 24 59.09 -142.80 REMARK 500 TYR A 28 63.72 67.49 REMARK 500 PHE B 20 -12.35 78.33 REMARK 500 ALA B 24 44.37 -146.27 REMARK 500 TYR B 28 60.99 61.95 REMARK 500 TYR C 14 39.99 -89.10 REMARK 500 PHE C 20 -15.64 88.29 REMARK 500 ALA C 24 51.55 -142.93 REMARK 500 SER D 15 -175.34 -69.23 REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 401 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 402 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 406 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C 501
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NLB RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT ASN4ALA) REMARK 900 RELATED ID: 2NLC RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT SER8ALA) REMARK 900 RELATED ID: 2NLD RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN11ALA) REMARK 900 RELATED ID: 2NLE RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN11ALA) REMARK 900 RELATED ID: 2NLF RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT LEU13GLU) REMARK 900 RELATED ID: 2NLH RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN24ALA) REMARK 900 RELATED ID: 2NLP RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTATNT GLN24GLU) REMARK 900 RELATED ID: 2NLQ RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT LYS31ALA) REMARK 900 RELATED ID: 2NLS RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN24ALA)
DBREF 2NLH A 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLH B 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLH C 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLH D 1 36 UNP P60022 BD01_HUMAN 33 68
SEQADV 2NLH ALA A 24 UNP P60022 GLN 56 ENGINEERED SEQADV 2NLH ALA B 24 UNP P60022 GLN 56 ENGINEERED SEQADV 2NLH ALA C 24 UNP P60022 GLN 56 ENGINEERED SEQADV 2NLH ALA D 24 UNP P60022 GLN 56 ENGINEERED
SEQRES 1 A 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 A 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE ALA GLY THR SEQRES 3 A 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 B 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 B 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE ALA GLY THR SEQRES 3 B 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 C 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 C 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE ALA GLY THR SEQRES 3 C 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 D 36 ASP HIS TYR ASN CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 D 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE ALA GLY THR SEQRES 3 D 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS
HET SO4 B 401 5 HET SO4 B 402 5 HET SO4 C 403 5 HET SO4 A 404 5 HET SO4 A 405 5 HET SO4 A 406 5 HET ACT C 501 4
HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION
FORMUL 5 SO4 6(O4 S 2-) FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *196(H2 O)
HELIX 1 1 ASP A 1 SER A 8 1 8 HELIX 2 2 ASP B 1 SER B 8 1 8 HELIX 3 3 ASP C 1 SER C 8 1 8 HELIX 4 4 ASP D 1 SER D 8 1 8
SHEET 1 A 3 GLN A 11 LEU A 13 0 SHEET 2 A 3 ALA A 32 CYS A 35 -1 O CYS A 35 N GLN A 11 SHEET 3 A 3 ILE A 23 CYS A 27 -1 N ALA A 24 O CYS A 34 SHEET 1 B 3 GLN B 11 LEU B 13 0 SHEET 2 B 3 ALA B 32 CYS B 35 -1 O LYS B 33 N LEU B 13 SHEET 3 B 3 ILE B 23 CYS B 27 -1 N ALA B 24 O CYS B 34 SHEET 1 C 3 GLN C 11 LEU C 13 0 SHEET 2 C 3 ALA C 32 CYS C 35 -1 O LYS C 33 N LEU C 13 SHEET 3 C 3 ILE C 23 CYS C 27 -1 N ALA C 24 O CYS C 34 SHEET 1 D 3 GLN D 11 LEU D 13 0 SHEET 2 D 3 ALA D 32 CYS D 35 -1 O CYS D 35 N GLN D 11 SHEET 3 D 3 ILE D 23 CYS D 27 -1 N ALA D 24 O CYS D 34
SSBOND 1 CYS A 5 CYS A 34 1555 1555 2.05 SSBOND 2 CYS A 12 CYS A 27 1555 1555 2.04 SSBOND 3 CYS A 17 CYS A 35 1555 1555 2.03 SSBOND 4 CYS B 5 CYS B 34 1555 1555 2.03 SSBOND 5 CYS B 12 CYS B 27 1555 1555 2.02 SSBOND 6 CYS B 17 CYS B 35 1555 1555 1.99 SSBOND 7 CYS C 5 CYS C 34 1555 1555 2.05 SSBOND 8 CYS C 12 CYS C 27 1555 1555 2.03 SSBOND 9 CYS C 17 CYS C 35 1555 1555 2.01 SSBOND 10 CYS D 5 CYS D 34 1555 1555 2.04 SSBOND 11 CYS D 12 CYS D 27 1555 1555 2.06 SSBOND 12 CYS D 17 CYS D 35 1555 1555 2.01
LINK NH2 ARG A 29 O1 SO4 A 406 1555 1555 1.98
SITE 1 AC1 9 ASP B 1 HIS B 2 CYS B 27 TYR B 28 SITE 2 AC1 9 ARG B 29 HOH B 105 HOH B 117 HOH B 145 SITE 3 AC1 9 TYR D 3 SITE 1 AC2 11 TYR B 3 HOH B 105 HOH B 117 HOH B 126 SITE 2 AC2 11 HOH B 143 HOH B 194 ASP D 1 HIS D 2 SITE 3 AC2 11 CYS D 27 TYR D 28 ARG D 29 SITE 1 AC3 10 TYR A 3 ASP C 1 HIS C 2 CYS C 27 SITE 2 AC3 10 TYR C 28 ARG C 29 HOH C 101 HOH C 123 SITE 3 AC3 10 HOH C 142 HOH C 269 SITE 1 AC4 10 ASP A 1 HIS A 2 CYS A 27 TYR A 28 SITE 2 AC4 10 ARG A 29 HOH A 107 HOH A 113 HOH A 121 SITE 3 AC4 10 HOH A 153 TYR C 3 SITE 1 AC5 5 ASP A 1 GLY A 25 THR A 26 HOH A 130 SITE 2 AC5 5 HOH A 291 SITE 1 AC6 5 ARG A 29 HOH A 224 ASP C 1 ASN C 4 SITE 2 AC6 5 ACT C 501 SITE 1 AC7 4 ARG A 29 SO4 A 406 ASN C 4 HOH C 218
CRYST1 44.590 26.770 59.600 90.00 102.60 90.00 P 1 21 1 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.022427 0.000000 0.005013 0.00000
SCALE2 0.000000 0.037355 0.000000 0.00000
SCALE3 0.000000 0.000000 0.017193 0.00000