10 20 30 40 50 60 70 80 2KRT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER LIPID BINDING PROTEIN 22-DEC-09 2KRT
TITLE SOLUTION NMR STRUCTURE OF A CONSERVED HYPOTHETICAL MEMBRANE TITLE 2 LIPOPROTEIN OBTAINED FROM UREAPLASMA PARVUM: NORTHEAST TITLE 3 STRUCTURAL GENOMICS CONSORTIUM TARGET UUR17A (139-239)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL MEMBRANE LIPOPROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 128-239; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UREAPLASMA PARVUM; SOURCE 3 ORGANISM_COMMON: UREAPLASMA UREALYTICUM BIOTYPE 1; SOURCE 4 ORGANISM_TAXID: 134821; SOURCE 5 GENE: UU045; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET 21-23C
KEYWDS LIPOPROTEIN, NESG, UUR17A, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.MANI,G.SWAPNA,H.JANJUA,C.CICCOSANTI,Y.HUANG,D.PATEL, AUTHOR 2 R.XIAO,T.ACTON,J.EVERETT,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 05-JAN-10 2KRT 0
JRNL AUTH R.MANI,G.SWAPNA,H.JANJUA,C.CICCOSANTI,Y.HUANG, JRNL AUTH 2 D.PATEL,R.XIAO,T.ACTON,J.EVERETT,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF A CONSERVED HYPOTHETICAL JRNL TITL 2 MEMBRANE LIPOPROTEIN OBTAINED FROM UREAPLASMA JRNL TITL 3 PARVUM : NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 4 TARGET UUR17A (139-239) JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS OBTAINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. GFT_NMR EXPERIMENTS WERE REMARK 3 USED FOR BACKBONE RESOSNANCE ASSIGNMENTS AND CONVENTIONAL 3D REMARK 3 TOCSY EXPERIMENTS WERE USED FOR SIDECHAIN ASSIGNMENTS. REMARK 3 AUTOMATED NOESY ASSIGNMENTS WERE MADE USING AUTOSTRUCTURE AND REMARK 3 CYANA-3.0 SOFTWARE. DIHEDRAL ANGLE CONSTRAINTS WERE OBTAINED REMARK 3 USING TALOS. THE STRUCTURE CALCULATION WAS DONE EXCLUDING THE REMARK 3 8-RESIDUE C-TERMINAL TAG (LEHHHHHH). FINAL STRUCTURE QUALITY REMARK 3 FACTOR EXCLUDING C-TERMINAL TAG: AS DETERMINED BY PSVS-V1-4: REMARK 3 ORDERED RESIDUES ARE DEFINED AS 5-71, 74-114. (A) RMSD REMARK 3 (ORDERED RESIDUE) ALL BACKBONE ATOMS - 0.7A, HEACYATOMS - REMARK 3 1.1A. (B) RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST REMARK 3 FAVORED REGION: 85.1%, ADDITIONALLY FAVORED: 14.6%, GENEROUSLY REMARK 3 ALLOWED: 0.4%. (C) PROCHECK SCORES FOR ORDERED RESIDUES (RAW/ REMARK 3 Z): PHI/PSI - -0.42/-1.34, ALL - -0.40/-2.37. (D) MOLPROBITY REMARK 3 CLASHSCORES (RAW/Z) - 21.86/-2.23. (E) RPF SCORES FOR THE REMARK 3 GOODNESS FIT TO NOESY DATA: RECALL - 0.917, PRECISION - 0.928, REMARK 3 F-MEASURE 0.923 AND FINAL DP-SCORE - 0.755.
REMARK 4 REMARK 4 2KRT COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-09. REMARK 100 THE RCSB ID CODE IS RCSB101494.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.91 MM [U-100% 13C; U-100% REMARK 210 15N] UUR17A, LIPOPROTEIN, 95% REMARK 210 H2O/5% D2O; 0.91 MM [U-100% REMARK 210 13C; U-100% 15N] UUR17A, REMARK 210 LIPOPROTEIN, 95% H2O/5% D2O; REMARK 210 0.7 MM [U-10% 13C; U-99% 15N] REMARK 210 UUR17A, LIPOPROTEIN, 95% H2O/ REMARK 210 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D 1H-15N/13C REMARK 210 SIMULTANEOUS NOESY; 3D 1H-13C REMARK 210 AROM NOESY; 3D CBCA(CO)NH; 3D REMARK 210 HBHA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; (4,3)D GFT- REMARK 210 CBCACACONHN; (4,3)D GFT- REMARK 210 HNNCABCA; 3D CCH-TOCSY; 3D REMARK 210 HCCH TOCSY; 3D CCCONH TOCSY; REMARK 210 3D HNHA; HET NOE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, AUTOSTRUCTURE REMARK 210 2.2.1, PINE 1.0, AUTOASSIGN REMARK 210 2.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 150 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 2 95.18 55.30 REMARK 500 1 GLN A 4 55.61 -106.17 REMARK 500 1 LYS A 19 -43.91 -135.10 REMARK 500 1 GLN A 36 -33.20 -146.94 REMARK 500 1 HIS A 55 -25.47 -142.65 REMARK 500 1 TYR A 57 73.44 -65.03 REMARK 500 1 SER A 110 102.62 -161.60 REMARK 500 1 ASN A 111 74.75 -116.72 REMARK 500 1 HIS A 116 37.91 -145.07 REMARK 500 2 SER A 3 -77.19 -116.77 REMARK 500 2 LEU A 18 20.12 -70.94 REMARK 500 2 LYS A 19 -40.42 -151.32 REMARK 500 2 TYR A 34 -9.54 -56.98 REMARK 500 2 GLN A 36 -35.11 -142.76 REMARK 500 2 LYS A 56 -159.58 -80.58 REMARK 500 2 TYR A 57 67.04 -58.51 REMARK 500 2 PRO A 71 42.25 -74.94 REMARK 500 2 ASP A 72 -58.27 -175.42 REMARK 500 2 ASP A 92 98.69 -63.50 REMARK 500 2 SER A 110 58.16 -157.92 REMARK 500 2 ASN A 111 73.94 -115.90 REMARK 500 2 GLU A 115 91.17 -69.20 REMARK 500 3 ASP A 20 -61.97 -92.69 REMARK 500 3 TYR A 57 91.15 -63.81 REMARK 500 3 ILE A 66 -62.17 -96.18 REMARK 500 3 LYS A 109 103.21 -162.19 REMARK 500 3 PRO A 112 -79.98 -65.25 REMARK 500 3 HIS A 117 -70.73 -84.38 REMARK 500 3 HIS A 119 84.70 51.08 REMARK 500 4 ILE A 16 90.38 -68.03 REMARK 500 4 LEU A 18 30.95 -73.39 REMARK 500 4 LYS A 19 -42.67 -166.98 REMARK 500 4 THR A 21 -50.76 -122.80 REMARK 500 4 TYR A 34 38.12 -72.06 REMARK 500 4 ASP A 35 -15.12 -140.69 REMARK 500 4 GLN A 48 -61.13 -93.92 REMARK 500 4 HIS A 55 -60.21 -163.94 REMARK 500 4 TYR A 57 29.10 47.17 REMARK 500 4 GLN A 58 75.25 -68.84 REMARK 500 4 ASN A 59 -36.42 -169.54 REMARK 500 4 ASN A 67 -179.83 -171.02 REMARK 500 4 PRO A 71 41.10 -71.89 REMARK 500 4 ASP A 72 77.00 49.75 REMARK 500 5 LEU A 18 28.14 -72.58 REMARK 500 5 LYS A 19 -44.47 -148.26 REMARK 500 5 TYR A 57 100.68 -57.24 REMARK 500 5 ILE A 66 -71.84 -83.22 REMARK 500 5 PRO A 71 153.34 -42.98 REMARK 500 5 ASP A 72 95.23 -55.69 REMARK 500 5 LYS A 94 -53.90 -120.01 REMARK 500 REMARK 500 THIS ENTRY HAS 164 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: UUR17A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16648 RELATED DB: BMRB
DBREF 2KRT A 2 113 UNP Q9PRA0 Q9PRA0_UREPA 128 239
SEQADV 2KRT MET A 1 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT LEU A 114 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT GLU A 115 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 116 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 117 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 118 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 119 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 120 UNP Q9PRA0 EXPRESSION TAG SEQADV 2KRT HIS A 121 UNP Q9PRA0 EXPRESSION TAG
SEQRES 1 A 121 MET LEU SER GLN ALA ASN GLU ASP PHE LYS LYS ILE VAL SEQRES 2 A 121 ASN ASN ILE ARG LEU LYS ASP THR PHE ASP PHE LYS LEU SEQRES 3 A 121 ALA ALA PHE PRO ASN GLN ASN TYR ASP GLN LEU LEU PRO SEQRES 4 A 121 SER GLN ILE TYR LYS ASN TYR TYR GLN GLY ILE GLU ILE SEQRES 5 A 121 GLN GLN HIS LYS TYR GLN ASN GLU LEU ASP ILE LYS ILE SEQRES 6 A 121 ILE ASN PHE LEU TYR PRO ASP GLY ASP PHE GLY SER ALA SEQRES 7 A 121 ASN LYS ASN GLY THR LEU LYS LEU SER LEU MET LEU THR SEQRES 8 A 121 ASP LYS LYS ASN ASN GLN VAL TYR TYR LYS LEU LEU GLU SEQRES 9 A 121 VAL SER GLY PHE LYS SER ASN PRO TYR LEU GLU HIS HIS SEQRES 10 A 121 HIS HIS HIS HIS
HELIX 1 1 ALA A 5 ASN A 15 1 11 HELIX 2 2 LEU A 38 LYS A 44 1 7 HELIX 3 3 ASP A 74 GLY A 82 1 9
SHEET 1 A 2 PHE A 22 LEU A 26 0 SHEET 2 A 2 ILE A 50 GLN A 54 -1 O GLU A 51 N LYS A 25 SHEET 1 B 3 LEU A 61 ASP A 62 0 SHEET 2 B 3 THR A 83 ASP A 92 -1 O THR A 91 N ASP A 62 SHEET 3 B 3 ILE A 65 LEU A 69 -1 N ILE A 66 O SER A 87 SHEET 1 C 3 LEU A 61 ASP A 62 0 SHEET 2 C 3 THR A 83 ASP A 92 -1 O THR A 91 N ASP A 62 SHEET 3 C 3 VAL A 98 SER A 106 -1 O TYR A 99 N LEU A 90
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000