10 20 30 40 50 60 70 80 2KRS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 22-DEC-09 2KRS
TITLE SOLUTION NMR STRUCTURE OF SH3 DOMAIN FROM CPF_0587 (FRAGMENT TITLE 2 415-479) FROM CLOSTRIDIUM PERFRINGENS. NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM (NESG) TARGET CPR74A.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE ENTEROTOXIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SH3 DOMAIN, RESIDUES 497-561; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM PERFRINGENS; SOURCE 3 ORGANISM_TAXID: 1502; SOURCE 4 GENE: CPE0606, CPF_0587, ENTD; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) PMGK; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET21-23C
KEYWDS ALL BETA, SH3, ENTD, CPF_0587, CPE0606, STRUCTURAL GENOMICS, KEYWDS 2 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 3 GENOMICS CONSORTIUM, NESG
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR T.A.RAMELOT,J.R.CORT,M.MAGLAQUI,C.CICCOSANTI,H.JANJUA, AUTHOR 2 R.NAIR,B.ROST,T.B.ACTON,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 26-JAN-10 2KRS 0
JRNL AUTH T.A.RAMELOT,J.R.CORT,M.MAGLAQUI,C.CICCOSANTI, JRNL AUTH 2 H.JANJUA,R.NAIR,B.ROST,T.B.ACTON,R.XIAO, JRNL AUTH 3 J.K.EVERETT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF SH3 DOMAIN FROM CPF_0587 JRNL TITL 2 (FRAGMENT 415-479) FROM CLOSTRIDIUM PERFRINGENS. JRNL TITL 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL 4 TARGET CPR74A. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NIH-XPLOR HBDB REFINEMENT
REMARK 4 REMARK 4 2KRS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-DEC-09. REMARK 100 THE RCSB ID CODE IS RCSB101493.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 95% REMARK 210 H2O/5% D2O; 20 MM MES, 100 MM REMARK 210 SODIUM CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 0.8 MM [U-100% REMARK 210 13C; U-100% 15N] PROTEIN, 100% REMARK 210 D2O; 20 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 % REMARK 210 SODIUM AZIDE, 0.9 MM [U-5% REMARK 210 13C; U-100% 15N] PROTEIN, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY ALIPH; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D HCCH-COSY; 3D (H) REMARK 210 CCH-TOCSY; 4D HCCH NOESY; 3D REMARK 210 1H-13C NOESY AROM REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCEIII REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2008, VNMR 6.1C, REMARK 210 TOPSPIN 2.1.4, AUTOSTRUCTURE REMARK 210 2.2.1, X-PLOR_NIH 2.20, SPARKY REMARK 210 3.113, PSVS 1.3, AUTOASSIGN REMARK 210 2.3.0, PDBSTAT 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH11 ARG A 14 HA SER A 19 1.51 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 2 ARG A 46 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 3 ARG A 14 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 3 ARG A 28 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 3 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 4 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -3.3 DEGREES REMARK 500 10 ARG A 28 CG - CD - NE ANGL. DEV. = -12.6 DEGREES REMARK 500 14 ARG A 28 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 15 ARG A 46 CD - NE - CZ ANGL. DEV. = -13.5 DEGREES REMARK 500 17 ARG A 14 CD - NE - CZ ANGL. DEV. = -8.9 DEGREES REMARK 500 18 ARG A 46 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 18 ARG A 46 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 9 -75.12 -119.06 REMARK 500 1 GLU A 64 58.65 -68.52 REMARK 500 1 LEU A 67 -6.38 -148.98 REMARK 500 1 HIS A 70 40.41 38.63 REMARK 500 2 SER A 9 -51.62 -143.68 REMARK 500 2 ASN A 63 -145.11 79.83 REMARK 500 3 SER A 9 -76.73 -130.87 REMARK 500 3 ASN A 30 13.18 59.29 REMARK 500 3 SER A 66 96.65 56.65 REMARK 500 3 GLU A 68 -105.62 -159.38 REMARK 500 3 HIS A 69 85.88 40.42 REMARK 500 3 HIS A 71 120.56 57.11 REMARK 500 3 HIS A 73 94.23 -168.76 REMARK 500 4 PRO A 17 12.27 -69.94 REMARK 500 4 ASN A 30 3.16 59.41 REMARK 500 4 GLU A 64 -170.04 -52.57 REMARK 500 4 LEU A 67 177.32 58.39 REMARK 500 4 HIS A 70 -107.64 48.67 REMARK 500 4 HIS A 71 -47.39 -148.12 REMARK 500 4 HIS A 73 -178.31 56.91 REMARK 500 5 ASN A 30 -27.85 71.03 REMARK 500 5 ASN A 63 -164.75 66.80 REMARK 500 5 GLU A 64 102.73 54.74 REMARK 500 5 SER A 66 -62.71 64.82 REMARK 500 5 LEU A 67 -168.60 56.20 REMARK 500 5 GLU A 68 92.04 54.87 REMARK 500 5 HIS A 73 -95.39 55.16 REMARK 500 6 SER A 9 -57.58 -136.59 REMARK 500 6 ASN A 63 97.74 -40.78 REMARK 500 6 GLU A 64 -95.72 -68.59 REMARK 500 6 HIS A 69 -130.77 -152.47 REMARK 500 6 HIS A 70 -115.52 47.90 REMARK 500 6 HIS A 71 83.83 39.04 REMARK 500 7 SER A 9 -68.47 -130.14 REMARK 500 7 ASN A 29 153.38 -46.65 REMARK 500 7 ILE A 36 -61.31 -93.63 REMARK 500 7 GLU A 64 -26.03 -146.95 REMARK 500 7 SER A 66 18.18 -141.25 REMARK 500 7 HIS A 70 98.65 46.52 REMARK 500 8 SER A 9 -67.19 -125.07 REMARK 500 8 PRO A 17 86.32 -68.32 REMARK 500 8 ASN A 63 91.42 61.69 REMARK 500 8 GLU A 68 92.19 54.31 REMARK 500 9 SER A 66 83.36 51.43 REMARK 500 9 HIS A 70 -173.66 45.02 REMARK 500 10 SER A 9 -53.33 -150.70 REMARK 500 10 ILE A 36 -62.97 -94.71 REMARK 500 10 ASN A 63 -172.17 45.33 REMARK 500 10 GLU A 64 69.32 66.25 REMARK 500 11 SER A 9 -153.84 -136.76 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 14 0.15 SIDE CHAIN REMARK 500 1 ARG A 28 0.17 SIDE CHAIN REMARK 500 2 ARG A 46 0.20 SIDE CHAIN REMARK 500 3 ARG A 14 0.21 SIDE CHAIN REMARK 500 4 ARG A 14 0.10 SIDE CHAIN REMARK 500 4 ARG A 28 0.14 SIDE CHAIN REMARK 500 4 ARG A 46 0.21 SIDE CHAIN REMARK 500 5 ARG A 14 0.29 SIDE CHAIN REMARK 500 5 ARG A 28 0.12 SIDE CHAIN REMARK 500 5 ARG A 46 0.11 SIDE CHAIN REMARK 500 7 ARG A 14 0.20 SIDE CHAIN REMARK 500 7 ARG A 28 0.12 SIDE CHAIN REMARK 500 8 ARG A 14 0.14 SIDE CHAIN REMARK 500 8 ARG A 28 0.20 SIDE CHAIN REMARK 500 8 ARG A 46 0.13 SIDE CHAIN REMARK 500 9 ARG A 14 0.27 SIDE CHAIN REMARK 500 9 ARG A 28 0.09 SIDE CHAIN REMARK 500 9 ARG A 46 0.28 SIDE CHAIN REMARK 500 10 ARG A 28 0.25 SIDE CHAIN REMARK 500 10 ARG A 46 0.11 SIDE CHAIN REMARK 500 11 ARG A 28 0.10 SIDE CHAIN REMARK 500 12 ARG A 14 0.20 SIDE CHAIN REMARK 500 12 ARG A 28 0.12 SIDE CHAIN REMARK 500 13 ARG A 14 0.16 SIDE CHAIN REMARK 500 13 ARG A 28 0.14 SIDE CHAIN REMARK 500 13 ARG A 46 0.10 SIDE CHAIN REMARK 500 14 ARG A 14 0.11 SIDE CHAIN REMARK 500 14 ARG A 28 0.26 SIDE CHAIN REMARK 500 14 ARG A 46 0.25 SIDE CHAIN REMARK 500 15 ARG A 28 0.11 SIDE CHAIN REMARK 500 15 ARG A 46 0.33 SIDE CHAIN REMARK 500 16 ARG A 14 0.11 SIDE CHAIN REMARK 500 16 ARG A 28 0.10 SIDE CHAIN REMARK 500 16 ARG A 46 0.09 SIDE CHAIN REMARK 500 17 ARG A 14 0.29 SIDE CHAIN REMARK 500 17 ARG A 28 0.08 SIDE CHAIN REMARK 500 18 ARG A 14 0.23 SIDE CHAIN REMARK 500 18 ARG A 28 0.14 SIDE CHAIN REMARK 500 18 ARG A 46 0.32 SIDE CHAIN REMARK 500 20 ARG A 28 0.18 SIDE CHAIN REMARK 500 20 ARG A 46 0.12 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CPR74A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16647 RELATED DB: BMRB
DBREF 2KRS A 2 66 UNP Q8XMT2 Q8XMT2_CLOPE 497 561
SEQADV 2KRS MET A 1 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS LEU A 67 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS GLU A 68 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 69 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 70 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 71 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 72 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 73 UNP Q8XMT2 EXPRESSION TAG SEQADV 2KRS HIS A 74 UNP Q8XMT2 EXPRESSION TAG
SEQRES 1 A 74 MET GLN GLY VAL VAL LYS VAL ASN SER ALA LEU ASN MET SEQRES 2 A 74 ARG SER GLY PRO GLY SER ASN TYR GLY VAL ILE GLY THR SEQRES 3 A 74 LEU ARG ASN ASN ASP LYS VAL GLU ILE ILE LYS GLU VAL SEQRES 4 A 74 ASP GLY TRP TYR GLU ILE ARG PHE ASN GLY LYS VAL GLY SEQRES 5 A 74 TYR ALA SER LYS SER TYR ILE THR ILE VAL ASN GLU GLY SEQRES 6 A 74 SER LEU GLU HIS HIS HIS HIS HIS HIS
SHEET 1 A 5 LYS A 50 ALA A 54 0 SHEET 2 A 5 TRP A 42 PHE A 47 -1 N PHE A 47 O LYS A 50 SHEET 3 A 5 LYS A 32 VAL A 39 -1 N LYS A 37 O GLU A 44 SHEET 4 A 5 GLY A 3 VAL A 5 -1 N GLY A 3 O VAL A 33 SHEET 5 A 5 ILE A 59 ILE A 61 -1 O THR A 60 N VAL A 4 SHEET 1 B 2 ALA A 10 ARG A 14 0 SHEET 2 B 2 VAL A 23 ARG A 28 -1 O LEU A 27 N LEU A 11
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000