10 20 30 40 50 60 70 80 2KMS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER IMMUNE SYSTEM 04-AUG-09 2KMS
TITLE COMBINED HIGH- AND LOW-RESOLUTION TECHNIQUES REVEAL COMPACT TITLE 2 STRUCTURE IN CENTRAL PORTION OF FACTOR H DESPITE LONG TITLE 3 INTER-MODULAR LINKERS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: COMPLEMENT FACTOR H; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SUSHI DOMAIN, RESIDUES 690-804; COMPND 5 SYNONYM: H FACTOR 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CFH, HF, HF1, HF2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPICZALPHAB
KEYWDS COMPACT STRUCTURE, LIMITED INTERDOMAIN FLEXIBILITY, AGE- KEYWDS 2 RELATED MACULAR DEGENERATION, ALTERNATIVE SPLICING, KEYWDS 3 COMPLEMENT ALTERNATE PATHWAY, DISEASE MUTATION, DISULFIDE KEYWDS 4 BOND, GLYCOPROTEIN, IMMUNE RESPONSE, INNATE IMMUNITY, KEYWDS 5 POLYMORPHISM, SECRETED, SUSHI, IMMUNE SYSTEM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.Q.SCHMIDT,A.P.HERBERT,M.GUARIENTO,H.D.T.MERTENS, AUTHOR 2 D.C.SOARES,D.UHRIN,A.J.ROWE,D.I.SVERGUN,P.N.BARLOW
REVDAT 2 08-DEC-09 2KMS 1 JRNL REVDAT 1 03-NOV-09 2KMS 0
JRNL AUTH C.Q.SCHMIDT,A.P.HERBERT,H.D.T.MERTENS,M.GUARIENTO, JRNL AUTH 2 D.C.SOARES,D.UHRIN,A.J.ROWE,D.I.SVERGUN,P.N.BARLOW JRNL TITL THE CENTRAL PORTION OF FACTOR H (MODULES 10-15) IS JRNL TITL 2 COMPACT AND CONTAINS A STRUCTURALLY DEVIANT CCP JRNL TITL 3 MODULE JRNL REF J.MOL.BIOL. V. 395 105 2010 JRNL REFN ISSN 0022-2836 JRNL PMID 19835885 JRNL DOI 10.1016/J.JMB.2009.10.010
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2, CYANA 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CYANA USED FIRST TO CALCULATE THE REMARK 3 STRUCTURES FOLLOWED BY REFINEMENT IN EXPLICIT WATER IN CNS.
REMARK 4 REMARK 4 2KMS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101314.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 20 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20MM POTASSIUM PHOSPHATE-1, REMARK 210 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNCO; 3D C(CO)NH; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-13C NOESY; 3D 1H- REMARK 210 15N NOESY; 3D CBCANH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, MOLMOL, AZARA, REMARK 210 PROCHECKNMR, TOPSPIN, WHATIF REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA GLU A 696 HE2 PHE A 717 1.56 REMARK 500 HZ3 LYS A 752 OE1 GLU A 770 1.59 REMARK 500 OE1 GLU A 763 HZ1 LYS A 766 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 8 GLY A 692 N GLY A 692 CA -0.098 REMARK 500 10 GLY A 692 N GLY A 692 CA -0.100 REMARK 500 11 GLY A 692 N GLY A 692 CA -0.100 REMARK 500 12 GLY A 692 N GLY A 692 CA -0.094 REMARK 500 15 GLY A 692 N GLY A 692 CA -0.100 REMARK 500 17 GLY A 692 N GLY A 692 CA -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 695 -160.12 -74.11 REMARK 500 1 HIS A 699 26.70 -145.89 REMARK 500 1 GLN A 703 -68.75 -94.60 REMARK 500 1 TYR A 709 79.28 72.95 REMARK 500 1 ASN A 718 -163.44 -128.78 REMARK 500 1 SER A 720 -84.50 -73.15 REMARK 500 1 THR A 724 -118.38 -75.23 REMARK 500 1 MET A 725 104.83 162.82 REMARK 500 1 ARG A 729 22.94 -141.89 REMARK 500 1 LEU A 741 151.33 68.73 REMARK 500 1 ILE A 747 -14.49 74.54 REMARK 500 1 HIS A 789 133.25 80.70 REMARK 500 2 ASP A 693 97.32 53.69 REMARK 500 2 PRO A 695 -171.61 -69.63 REMARK 500 2 HIS A 699 26.26 -141.12 REMARK 500 2 TYR A 709 65.57 68.68 REMARK 500 2 SER A 720 -75.61 -67.02 REMARK 500 2 ARG A 729 25.43 -143.31 REMARK 500 2 THR A 739 -152.90 -90.95 REMARK 500 2 LEU A 741 151.59 71.12 REMARK 500 2 ALA A 746 1.91 -65.97 REMARK 500 2 ILE A 747 -19.53 79.35 REMARK 500 2 HIS A 789 129.16 75.00 REMARK 500 3 CYS A 691 -70.89 -73.50 REMARK 500 3 ASP A 693 112.94 62.25 REMARK 500 3 PRO A 695 -166.90 -71.64 REMARK 500 3 SER A 706 100.26 58.84 REMARK 500 3 TYR A 709 72.94 68.55 REMARK 500 3 ASN A 718 -163.12 -124.69 REMARK 500 3 HIS A 735 -15.49 71.02 REMARK 500 3 THR A 739 -155.76 -85.06 REMARK 500 3 LEU A 741 159.93 71.60 REMARK 500 3 ALA A 746 4.31 -62.51 REMARK 500 3 ILE A 747 -17.30 77.37 REMARK 500 3 ASN A 774 3.10 88.12 REMARK 500 3 HIS A 789 118.37 72.44 REMARK 500 4 PRO A 695 -161.62 -72.67 REMARK 500 4 TYR A 709 77.77 68.92 REMARK 500 4 ASN A 718 -162.10 -120.41 REMARK 500 4 HIS A 735 -49.93 72.69 REMARK 500 4 THR A 739 -163.50 -74.91 REMARK 500 4 LEU A 741 148.22 81.95 REMARK 500 4 ALA A 746 4.25 -65.99 REMARK 500 4 ILE A 747 -26.35 80.11 REMARK 500 4 LEU A 750 -166.36 -78.71 REMARK 500 4 HIS A 789 128.38 76.77 REMARK 500 5 CYS A 691 -80.69 -67.54 REMARK 500 5 PRO A 695 -164.33 -67.46 REMARK 500 5 GLN A 703 -77.90 -81.44 REMARK 500 5 LEU A 704 129.84 -172.20 REMARK 500 REMARK 500 THIS ENTRY HAS 268 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 3 ARG A 729 0.08 SIDE CHAIN REMARK 500 6 ARG A 778 0.09 SIDE CHAIN REMARK 500 7 ARG A 796 0.09 SIDE CHAIN REMARK 500 9 ARG A 780 0.08 SIDE CHAIN REMARK 500 11 ARG A 782 0.08 SIDE CHAIN REMARK 500 12 ARG A 782 0.12 SIDE CHAIN REMARK 500 15 ARG A 778 0.10 SIDE CHAIN REMARK 500 17 ARG A 729 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16439 RELATED DB: BMRB
DBREF 2KMS A 690 804 UNP P08603 CFAH_HUMAN 690 804
SEQRES 1 A 115 THR CYS GLY ASP ILE PRO GLU LEU GLU HIS GLY TRP ALA SEQRES 2 A 115 GLN LEU SER SER PRO PRO TYR TYR TYR GLY ASP SER VAL SEQRES 3 A 115 GLU PHE ASN CYS SER GLU SER PHE THR MET ILE GLY HIS SEQRES 4 A 115 ARG SER ILE THR CYS ILE HIS GLY VAL TRP THR GLN LEU SEQRES 5 A 115 PRO GLN CYS VAL ALA ILE ASP LYS LEU LYS LYS CYS LYS SEQRES 6 A 115 SER SER ASN LEU ILE ILE LEU GLU GLU HIS LEU LYS ASN SEQRES 7 A 115 LYS LYS GLU PHE ASP HIS ASN SER ASN ILE ARG TYR ARG SEQRES 8 A 115 CYS ARG GLY LYS GLU GLY TRP ILE HIS THR VAL CYS ILE SEQRES 9 A 115 ASN GLY ARG TRP ASP PRO GLU VAL ASN CYS SER
HELIX 1 1 HIS A 764 LYS A 768 5 5
SHEET 1 A 3 TRP A 701 ALA A 702 0 SHEET 2 A 3 SER A 714 ASN A 718 -1 O ASN A 718 N TRP A 701 SHEET 3 A 3 SER A 730 THR A 732 -1 O ILE A 731 N VAL A 715 SHEET 1 B 2 CYS A 753 LYS A 754 0 SHEET 2 B 2 GLU A 770 PHE A 771 -1 O PHE A 771 N CYS A 753 SHEET 1 C 3 ASN A 776 ILE A 777 0 SHEET 2 C 3 THR A 790 CYS A 792 -1 O THR A 790 N ILE A 777 SHEET 3 C 3 TRP A 797 ASP A 798 -1 O ASP A 798 N VAL A 791
SSBOND 1 CYS A 691 CYS A 733 1555 1555 2.02 SSBOND 2 CYS A 719 CYS A 744 1555 1555 2.03 SSBOND 3 CYS A 753 CYS A 792 1555 1555 2.02 SSBOND 4 CYS A 781 CYS A 803 1555 1555 2.03
CISPEP 1 PRO A 707 PRO A 708 1 6.10 CISPEP 2 ASP A 798 PRO A 799 1 0.10 CISPEP 3 PRO A 707 PRO A 708 2 2.84 CISPEP 4 ASP A 798 PRO A 799 2 -0.58 CISPEP 5 PRO A 707 PRO A 708 3 7.15 CISPEP 6 ASP A 798 PRO A 799 3 -1.43 CISPEP 7 PRO A 707 PRO A 708 4 6.67 CISPEP 8 ASP A 798 PRO A 799 4 -1.43 CISPEP 9 PRO A 707 PRO A 708 5 5.13 CISPEP 10 ASP A 798 PRO A 799 5 1.60 CISPEP 11 PRO A 707 PRO A 708 6 4.24 CISPEP 12 ASP A 798 PRO A 799 6 0.26 CISPEP 13 PRO A 707 PRO A 708 7 5.54 CISPEP 14 ASP A 798 PRO A 799 7 -0.77 CISPEP 15 PRO A 707 PRO A 708 8 5.81 CISPEP 16 ASP A 798 PRO A 799 8 -0.16 CISPEP 17 PRO A 707 PRO A 708 9 4.14 CISPEP 18 ASP A 798 PRO A 799 9 -0.76 CISPEP 19 PRO A 707 PRO A 708 10 6.30 CISPEP 20 ASP A 798 PRO A 799 10 -1.56 CISPEP 21 PRO A 707 PRO A 708 11 0.06 CISPEP 22 ASP A 798 PRO A 799 11 -0.52 CISPEP 23 PRO A 707 PRO A 708 12 5.53 CISPEP 24 ASP A 798 PRO A 799 12 -1.83 CISPEP 25 PRO A 707 PRO A 708 13 3.57 CISPEP 26 ASP A 798 PRO A 799 13 -0.93 CISPEP 27 PRO A 707 PRO A 708 14 4.70 CISPEP 28 ASP A 798 PRO A 799 14 -1.11 CISPEP 29 PRO A 707 PRO A 708 15 5.40 CISPEP 30 ASP A 798 PRO A 799 15 0.85 CISPEP 31 PRO A 707 PRO A 708 16 7.02 CISPEP 32 ASP A 798 PRO A 799 16 -0.35 CISPEP 33 PRO A 707 PRO A 708 17 3.65 CISPEP 34 ASP A 798 PRO A 799 17 -1.18 CISPEP 35 PRO A 707 PRO A 708 18 4.74 CISPEP 36 ASP A 798 PRO A 799 18 -0.20 CISPEP 37 PRO A 707 PRO A 708 19 5.97 CISPEP 38 ASP A 798 PRO A 799 19 -0.71 CISPEP 39 PRO A 707 PRO A 708 20 5.32 CISPEP 40 ASP A 798 PRO A 799 20 -1.36
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000