10 20 30 40 50 60 70 80 2KMI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE 28-JUL-09 2KMI
TITLE MESD(12-155), THE CORE STRUCTURAL DOMAIN OF MESD THAT IS ESSENTIAL FOR TITLE 2 PROPER FOLDING OF LRP5/6
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MESODERM DEVELOPMENT CANDIDATE 2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: MESDC2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PTWIN1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PLASMID
KEYWDS MESD/BOCA, LRP5/6, CHAPERONE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.CHEN,J.WANG
REVDAT 3 18-AUG-10 2KMI 1 JRNL REVDAT 2 30-JUN-10 2KMI 1 REMARK REVDAT 1 23-JUN-10 2KMI 0
JRNL AUTH J.CHEN,Q.LI,C.C.LIU,B.ZHOU,G.BU,J.WANG JRNL TITL NMR STRUCTURE NOTE: SOLUTION STRUCTURE OF THE CORE DOMAIN OF JRNL TITL 2 MESD THAT IS ESSENTIAL FOR PROPER FOLDING OF LRP5/6. JRNL REF J.BIOMOL.NMR V. 47 283 2010 JRNL REFN ISSN 0925-2738 JRNL PMID 20506034 JRNL DOI 10.1007/S10858-010-9426-8
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.HERZ,P.MARSCHANG REMARK 1 TITL COAXING THE LDL RECEPTOR FAMILY INTO THE FOLD REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 112 289 2003 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 12581519
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KMI COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101304.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-13C; U-15N] MESD12- REMARK 210 155, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D CBCA(CO)NH; 3D HNCACB; 3D HCCH REMARK 210 -TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : PIPP, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : ALL CALCULATED STRUCTURES REMARK 210 SUBMITTED REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 130.38 -178.78 REMARK 500 1 LYS A 4 30.27 -95.96 REMARK 500 1 TYR A 9 89.01 57.62 REMARK 500 1 ASN A 10 -74.25 -141.50 REMARK 500 1 ASP A 11 33.96 -162.13 REMARK 500 1 PRO A 33 84.02 -69.70 REMARK 500 1 SER A 45 -49.85 -135.40 REMARK 500 1 LYS A 46 136.43 -172.90 REMARK 500 1 ASP A 48 72.69 -114.16 REMARK 500 1 PRO A 49 -173.49 -69.76 REMARK 500 1 THR A 59 142.06 -173.00 REMARK 500 1 MET A 66 114.71 -165.10 REMARK 500 1 THR A 70 74.72 -167.04 REMARK 500 1 PRO A 75 84.76 -69.80 REMARK 500 1 THR A 76 48.71 -159.64 REMARK 500 1 ALA A 94 -75.82 -141.41 REMARK 500 1 ASN A 95 60.63 -179.49 REMARK 500 1 TYR A 96 98.51 59.68 REMARK 500 1 ASP A 97 73.96 -113.77 REMARK 500 1 ARG A 130 85.66 -174.22 REMARK 500 1 PRO A 142 78.58 -69.78 REMARK 500 2 LYS A 2 -67.02 -179.24 REMARK 500 2 LYS A 4 46.63 -91.04 REMARK 500 2 ARG A 7 51.52 -111.00 REMARK 500 2 TYR A 9 96.81 58.61 REMARK 500 2 ASN A 10 -59.58 -150.77 REMARK 500 2 ASP A 11 39.47 -168.07 REMARK 500 2 GLU A 29 145.67 -174.45 REMARK 500 2 PRO A 33 94.43 -69.74 REMARK 500 2 SER A 45 32.18 -149.05 REMARK 500 2 LYS A 46 72.23 52.45 REMARK 500 2 LYS A 60 119.83 -173.31 REMARK 500 2 MET A 66 114.74 -165.05 REMARK 500 2 THR A 70 78.70 -171.57 REMARK 500 2 ASN A 74 74.01 -171.00 REMARK 500 2 PRO A 75 99.54 -69.71 REMARK 500 2 THR A 76 43.32 -154.38 REMARK 500 2 ALA A 94 -78.13 -144.32 REMARK 500 2 ASN A 95 62.14 -176.91 REMARK 500 2 TYR A 96 100.19 63.32 REMARK 500 2 ASP A 97 68.34 -118.28 REMARK 500 2 ARG A 130 62.85 -175.74 REMARK 500 2 TYR A 141 70.17 59.52 REMARK 500 2 PRO A 142 -173.77 -69.84 REMARK 500 3 LYS A 2 -73.12 -169.37 REMARK 500 3 LYS A 4 53.53 -101.94 REMARK 500 3 ARG A 7 42.29 -99.24 REMARK 500 3 TYR A 9 94.35 60.36 REMARK 500 3 ASN A 10 -66.78 -170.45 REMARK 500 3 ASP A 11 43.10 -141.52 REMARK 500 REMARK 500 THIS ENTRY HAS 416 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KGL RELATED DB: PDB REMARK 900 CONSEVERD REGION OF MESD
DBREF 2KMI A 1 145 UNP Q9ERE7 MESD2_MOUSE 41 185
SEQRES 1 A 145 ARG LYS LYS LYS ASP ILE ARG ASP TYR ASN ASP ALA ASP SEQRES 2 A 145 MET ALA ARG LEU LEU GLU GLN TRP GLU LYS ASP ASP ASP SEQRES 3 A 145 ILE GLU GLU GLY ASP LEU PRO GLU HIS LYS ARG PRO SER SEQRES 4 A 145 ALA PRO ILE ASP PHE SER LYS LEU ASP PRO GLY LYS PRO SEQRES 5 A 145 GLU SER ILE LEU LYS MET THR LYS LYS GLY LYS THR LEU SEQRES 6 A 145 MET MET PHE VAL THR VAL SER GLY ASN PRO THR GLU LYS SEQRES 7 A 145 GLU THR GLU GLU ILE THR SER LEU TRP GLN GLY SER LEU SEQRES 8 A 145 PHE ASN ALA ASN TYR ASP VAL GLN ARG PHE ILE VAL GLY SEQRES 9 A 145 SER ASP ARG ALA ILE PHE MET LEU ARG ASP GLY SER TYR SEQRES 10 A 145 ALA TRP GLU ILE LYS ASP PHE LEU VAL SER GLN ASP ARG SEQRES 11 A 145 CYS ALA GLU VAL THR LEU GLU GLY GLN MET TYR PRO GLY SEQRES 12 A 145 LYS GLY
HELIX 1 1 ASP A 11 GLU A 22 5 12 HELIX 2 2 PRO A 52 THR A 59 1 8 HELIX 3 3 THR A 76 ALA A 94 1 19 HELIX 4 4 GLY A 115 ASP A 129 1 15
SHEET 1 A 4 VAL A 98 VAL A 103 0 SHEET 2 A 4 ASP A 106 LEU A 112 -1 O PHE A 110 N GLN A 99 SHEET 3 A 4 THR A 64 VAL A 71 -1 N VAL A 69 O ILE A 109 SHEET 4 A 4 ALA A 132 GLU A 137 -1 O GLU A 133 N PHE A 68
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000