10 20 30 40 50 60 70 80 2KMC - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 27-JUL-09 2KMC
TITLE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF KINDLIN-1
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FERMITIN FAMILY HOMOLOG 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-96; COMPND 5 SYNONYM: KINDLIN-1, UNC-112-RELATED PROTEIN 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: FERMT1, KIND1, URP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 STAR (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET151-TOPO
KEYWDS KINDLIN, CYTOSKELETON, INTEGRIN, NMR, N-TERMINAL, TALIN, KEYWDS 2 CELL ADHESION, CELL JUNCTION, CELL MEMBRANE, CELL KEYWDS 3 PROJECTION, CYTOPLASM, MEMBRANE, PHOSPHOPROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR B.T.GOULT,N.BATE,G.C.ROBERTS,I.L.BARSUKOV,D.R.CRITCHLEY
REVDAT 2 01-DEC-09 2KMC 1 JRNL REVDAT 1 06-OCT-09 2KMC 0
JRNL AUTH B.T.GOULT,M.BOUAOUINA,D.S.HARBURGER,N.BATE,B.PATEL, JRNL AUTH 2 N.J.ANTHIS,I.D.CAMPBELL,D.A.CALDERWOOD, JRNL AUTH 3 I.L.BARSUKOV,G.C.ROBERTS,D.R.CRITCHLEY JRNL TITL THE STRUCTURE OF THE N-TERMINUS OF KINDLIN-1: A JRNL TITL 2 DOMAIN IMPORTANT FOR ALPHAIIBBETA3 INTEGRIN JRNL TITL 3 ACTIVATION JRNL REF J.MOL.BIOL. V. 394 944 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19804783 JRNL DOI 10.1016/J.JMB.2009.09.061
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, ARIA 1.2, CYANA 2.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), LINGE, O'DONOGHUE AND NILGES (ARIA), REMARK 3 GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL STRUCTURES REFINED IN EXPLICIT REMARK 3 WATER BATH AS IMPLEMENTED IN ARIA 1.2/CNS 1.1. 20 LOWEST REMARK 3 ENERGY STRUCTURES SELECTED FROM WATER REFINEMENT USING CNS. REMARK 3 INITIAL STRUCTURES GENERATED WITH CYANA
REMARK 4 REMARK 4 2KMC COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101298.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.4MM F0-1, 10% [U-100% 2H] REMARK 210 D2O-2, 2MM DTT-3, 50MM SODIUM REMARK 210 CHLORIDE-4, 20MM SODIUM REMARK 210 PHOSPHATE-5, 90% H2O/10% D2O; REMARK 210 0.4MM [U-100% 13C; U-100% 15N] REMARK 210 F0-6, 10% [U-100% 2H] D2O-7, REMARK 210 2MM DTT-8, 50 MM SODIUM REMARK 210 CHLORIDE-9, 20MM SODIUM REMARK 210 PHOSPHATE-10, 90% H2O/10% D2O; REMARK 210 0.4MM F0-11, 100% [U-100% 2H] REMARK 210 D2O-12, 2MM DTT-13, 50MM REMARK 210 SODIUM CHLORIDE-14, 20MM REMARK 210 SODIUM PHOSPHATE-15, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.0, CYANA 2.1, REMARK 210 ANALYSIS 1.0.15 REMARK 210 METHOD USED : SIMULATED ANNEALING, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA HIS A 38 HA THR A 76 1.44 REMARK 500 H VAL A 18 O THR A 27 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A -4 101.06 63.91 REMARK 500 1 LEU A 2 -156.02 59.61 REMARK 500 1 SER A 3 -43.01 73.63 REMARK 500 1 LEU A 7 -74.62 -103.16 REMARK 500 1 THR A 8 14.79 175.98 REMARK 500 1 GLN A 25 151.52 178.75 REMARK 500 1 ASN A 51 74.61 54.74 REMARK 500 1 ARG A 67 74.16 51.71 REMARK 500 1 LYS A 95 -170.21 51.78 REMARK 500 2 PRO A -2 7.15 -66.22 REMARK 500 2 PHE A -1 171.10 70.44 REMARK 500 2 LEU A 2 -43.28 -161.53 REMARK 500 2 SER A 4 34.97 -150.12 REMARK 500 2 ALA A 10 121.56 67.42 REMARK 500 2 GLU A 24 174.41 61.75 REMARK 500 2 ASN A 51 71.67 55.31 REMARK 500 2 ALA A 53 92.93 -66.02 REMARK 500 3 ASP A -3 -59.14 -142.40 REMARK 500 3 SER A 9 -65.91 -174.86 REMARK 500 3 ALA A 10 33.39 -162.26 REMARK 500 3 GLN A 25 117.35 -173.53 REMARK 500 3 ASN A 51 75.22 60.40 REMARK 500 3 ARG A 67 82.87 57.89 REMARK 500 3 GLN A 83 -164.65 -121.07 REMARK 500 3 LYS A 95 139.83 71.19 REMARK 500 4 THR A 0 -161.34 53.99 REMARK 500 4 SER A 9 40.31 -104.59 REMARK 500 4 ALA A 10 42.19 -79.44 REMARK 500 4 ASP A 55 36.33 -148.30 REMARK 500 4 ARG A 67 76.78 53.30 REMARK 500 4 HIS A 94 78.48 49.04 REMARK 500 5 PRO A -2 33.13 -86.85 REMARK 500 5 THR A 0 -84.00 -74.85 REMARK 500 5 SER A 3 105.95 68.95 REMARK 500 5 LEU A 7 48.74 -82.73 REMARK 500 5 ALA A 21 105.08 -49.98 REMARK 500 5 ASN A 51 81.06 53.45 REMARK 500 5 ASP A 58 81.85 60.41 REMARK 500 5 ARG A 67 72.72 59.37 REMARK 500 5 GLN A 83 -169.36 -112.22 REMARK 500 5 LYS A 95 142.50 69.22 REMARK 500 6 ILE A -4 90.55 65.74 REMARK 500 6 MET A 1 88.08 65.66 REMARK 500 6 LEU A 7 -61.85 72.11 REMARK 500 6 THR A 8 32.32 -80.52 REMARK 500 6 ASN A 22 -37.14 -179.92 REMARK 500 6 TRP A 56 35.43 -96.68 REMARK 500 6 LYS A 95 77.74 59.65 REMARK 500 7 SER A 3 76.28 -163.24 REMARK 500 7 SER A 4 53.35 -152.13 REMARK 500 REMARK 500 THIS ENTRY HAS 142 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16163 RELATED DB: BMRB
DBREF 2KMC A 1 96 UNP P59113 FERM1_MOUSE 1 96
SEQADV 2KMC GLY A -5 UNP P59113 EXPRESSION TAG SEQADV 2KMC ILE A -4 UNP P59113 EXPRESSION TAG SEQADV 2KMC ASP A -3 UNP P59113 EXPRESSION TAG SEQADV 2KMC PRO A -2 UNP P59113 EXPRESSION TAG SEQADV 2KMC PHE A -1 UNP P59113 EXPRESSION TAG SEQADV 2KMC THR A 0 UNP P59113 EXPRESSION TAG
SEQRES 1 A 102 GLY ILE ASP PRO PHE THR MET LEU SER SER GLY ASP LEU SEQRES 2 A 102 THR SER ALA SER TRP GLU LEU VAL VAL ARG VAL ASP HIS SEQRES 3 A 102 ALA ASN GLY GLU GLN GLN THR GLU ILE THR LEU ARG VAL SEQRES 4 A 102 SER GLY ASP LEU HIS ILE GLY GLY VAL MET LEU LYS LEU SEQRES 5 A 102 VAL GLU GLN MET ASN ILE ALA GLN ASP TRP SER ASP TYR SEQRES 6 A 102 ALA LEU TRP TRP GLU GLN LYS ARG CYS TRP LEU LEU LYS SEQRES 7 A 102 THR HIS TRP THR LEU ASP LYS CYS GLY VAL GLN ALA ASP SEQRES 8 A 102 ALA ASN LEU LEU PHE THR PRO GLN HIS LYS MET
HELIX 1 1 HIS A 38 ASN A 51 1 14 HELIX 2 2 THR A 76 GLY A 81 1 6
SHEET 1 A 5 GLN A 26 VAL A 33 0 SHEET 2 A 5 TRP A 12 ASP A 19 -1 N VAL A 18 O THR A 27 SHEET 3 A 5 LEU A 88 PRO A 92 1 O PHE A 90 N ARG A 17 SHEET 4 A 5 TYR A 59 TRP A 63 -1 N TRP A 62 O LEU A 89 SHEET 5 A 5 CYS A 68 LEU A 70 -1 O LEU A 70 N LEU A 61
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000