10 20 30 40 50 60 70 80 2KLI - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSFERASE 03-JUL-09 2KLI
TITLE STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO TITLE 2 THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: SENSOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 EC: 2.7.13.3; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS SP. JA-2-3B'A(2-13); SOURCE 3 ORGANISM_TAXID: 321332; SOURCE 4 GENE: CYB_2465; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PGEX-4T
KEYWDS PHYTOCHROME, KINASE, PHOSPHOPROTEIN, TRANSFERASE, STRUCTURAL KEYWDS 2 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, CENTER FOR KEYWDS 3 EUKARYOTIC STRUCTURAL GENOMICS, CESG
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.C.CORNILESCU,G.CORNILESCU,A.T.ULIJASZ,J.ZHANG,M.RIVERA, AUTHOR 2 R.D.VIERSTRA,J.L.MARKLEY,CENTER FOR EUKARYOTIC STRUCTURAL AUTHOR 3 GENOMICS (CESG)
REVDAT 4 26-JAN-10 2KLI 1 JRNL REVDAT 3 19-JAN-10 2KLI 1 JRNL REVDAT 2 29-DEC-09 2KLI 1 JRNL REVDAT 1 03-NOV-09 2KLI 0
JRNL AUTH A.T.ULIJASZ,G.CORNILESCU,C.C.CORNILESCU,J.ZHANG, JRNL AUTH 2 M.RIVERA,J.L.MARKLEY,R.D.VIERSTRA JRNL TITL STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A JRNL TITL 2 PHYTOCHROME TO THE ACTIVATED PFR FORM JRNL REF NATURE V. 463 250 2010 JRNL REFN ISSN 0028-0836 JRNL PMID 20075921 JRNL DOI 10.1038/NATURE08671
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KLI COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-SEP-09. REMARK 100 THE RCSB ID CODE IS RCSB101269.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 8.5 REMARK 210 IONIC STRENGTH : 10 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1-2 MM [U-13C; U-15N] REMARK 210 PROTEIN, 93% H2O/7% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO)NH REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 152 HG SER A 168 1.40 REMARK 500 O LEU A 94 H ALA A 98 1.41 REMARK 500 O HIS A 141 H SER A 145 1.42 REMARK 500 HE2 HIS A 170 HH TYR A 176 1.49 REMARK 500 O LYS A 144 H GLY A 147 1.51 REMARK 500 HZ2 LYS A 52 HAB1 CYC A 203 1.58 REMARK 500 HE2 HIS A 170 OH TYR A 176 1.59 REMARK 500 O TYR A 54 H LEU A 165 1.59 REMARK 500 O ASP A 57 H GLY A 60 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 72 36.70 -175.02 REMARK 500 1 PRO A 88 -106.73 -78.40 REMARK 500 1 GLU A 89 -64.71 -152.49 REMARK 500 1 GLN A 99 69.64 27.51 REMARK 500 1 ARG A 101 78.96 61.55 REMARK 500 1 PRO A 116 165.44 -37.72 REMARK 500 1 LEU A 127 -117.08 44.27 REMARK 500 1 HIS A 159 -118.38 59.01 REMARK 500 1 GLU A 172 129.72 -174.16 REMARK 500 2 GLU A 72 33.54 -176.38 REMARK 500 2 PRO A 88 -116.25 -45.57 REMARK 500 2 GLU A 89 -44.61 -154.30 REMARK 500 2 GLN A 99 69.80 29.19 REMARK 500 2 ARG A 101 70.40 63.18 REMARK 500 2 PRO A 116 -37.84 -37.86 REMARK 500 2 LEU A 121 -69.28 59.90 REMARK 500 2 ARG A 124 90.67 1.62 REMARK 500 2 LEU A 127 -165.36 44.44 REMARK 500 2 ASP A 136 154.18 -37.85 REMARK 500 2 HIS A 159 -122.42 57.66 REMARK 500 2 GLU A 172 135.38 -177.08 REMARK 500 2 ARG A 174 101.56 29.95 REMARK 500 3 GLU A 72 34.49 -176.94 REMARK 500 3 PRO A 88 -101.31 -41.71 REMARK 500 3 GLU A 89 -59.22 -153.54 REMARK 500 3 GLN A 99 67.01 25.21 REMARK 500 3 ARG A 101 65.57 64.38 REMARK 500 3 PRO A 116 157.53 -37.21 REMARK 500 3 GLU A 117 158.15 55.89 REMARK 500 3 TRP A 119 -76.74 -42.79 REMARK 500 3 ARG A 124 145.48 57.84 REMARK 500 3 LEU A 127 -126.80 43.49 REMARK 500 3 PRO A 130 152.91 -42.85 REMARK 500 3 ARG A 133 77.58 -119.99 REMARK 500 3 PRO A 134 150.29 -48.07 REMARK 500 3 PRO A 137 -28.69 -38.75 REMARK 500 3 HIS A 159 -122.98 59.32 REMARK 500 3 ALA A 171 -170.56 -46.14 REMARK 500 4 PRO A 88 -125.47 -48.47 REMARK 500 4 GLU A 89 -43.08 -142.91 REMARK 500 4 GLN A 99 69.65 27.06 REMARK 500 4 ARG A 101 70.56 63.06 REMARK 500 4 SER A 118 -171.26 54.89 REMARK 500 4 TRP A 119 170.00 53.80 REMARK 500 4 LEU A 121 -61.17 -150.69 REMARK 500 4 ARG A 124 79.55 60.92 REMARK 500 4 LEU A 127 -134.25 43.26 REMARK 500 4 PRO A 130 157.55 -43.48 REMARK 500 4 HIS A 159 -126.71 64.02 REMARK 500 4 GLU A 172 134.75 -178.79 REMARK 500 REMARK 500 THIS ENTRY HAS 273 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CYC A 203
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: GO.102706 RELATED DB: TARGETDB
DBREF 2KLI A 31 200 UNP Q2JIZ5 Q2JIZ5_SYNJB 31 200
SEQADV 2KLI SER A 201 UNP Q2JIZ5 EXPRESSION TAG SEQADV 2KLI LEU A 202 UNP Q2JIZ5 EXPRESSION TAG
SEQRES 1 A 172 LEU ASP GLN ILE LEU ARG ALA THR VAL GLU GLU VAL ARG SEQRES 2 A 172 ALA PHE LEU GLY THR ASP ARG VAL LYS VAL TYR ARG PHE SEQRES 3 A 172 ASP PRO GLU GLY HIS GLY THR VAL VAL ALA GLU ALA ARG SEQRES 4 A 172 GLY GLY GLU ARG LEU PRO SER LEU LEU GLY LEU THR PHE SEQRES 5 A 172 PRO ALA GLY ASP ILE PRO GLU GLU ALA ARG ARG LEU PHE SEQRES 6 A 172 ARG LEU ALA GLN VAL ARG VAL ILE VAL ASP VAL GLU ALA SEQRES 7 A 172 GLN SER ARG SER ILE SER GLN PRO GLU SER TRP GLY LEU SEQRES 8 A 172 SER ALA ARG VAL PRO LEU GLY GLU PRO LEU GLN ARG PRO SEQRES 9 A 172 VAL ASP PRO CYS HIS VAL HIS TYR LEU LYS SER MET GLY SEQRES 10 A 172 VAL ALA SER SER LEU VAL VAL PRO LEU MET HIS HIS GLN SEQRES 11 A 172 GLU LEU TRP GLY LEU LEU VAL SER HIS HIS ALA GLU PRO SEQRES 12 A 172 ARG PRO TYR SER GLN GLU GLU LEU GLN VAL VAL GLN LEU SEQRES 13 A 172 LEU ALA ASP GLN VAL SER ILE ALA ILE ALA GLN ALA GLU SEQRES 14 A 172 LEU SER LEU
HET CYC A 203 81
HETNAM CYC PHYCOCYANOBILIN
FORMUL 2 CYC C33 H40 N4 O6
HELIX 1 1 LEU A 31 GLY A 47 1 17 HELIX 2 2 GLY A 85 ILE A 87 5 3 HELIX 3 3 GLU A 89 GLN A 99 1 11 HELIX 4 4 ASP A 136 MET A 146 1 11 HELIX 5 5 SER A 177 LEU A 202 1 26
SHEET 1 A 5 ALA A 66 ARG A 69 0 SHEET 2 A 5 ARG A 50 ARG A 55 -1 N VAL A 51 O ALA A 68 SHEET 3 A 5 GLU A 161 HIS A 170 -1 O HIS A 169 N ARG A 50 SHEET 4 A 5 SER A 150 VAL A 153 -1 N LEU A 152 O SER A 168 SHEET 5 A 5 VAL A 102 ILE A 103 -1 N ILE A 103 O SER A 151 SHEET 1 B 4 ALA A 66 ARG A 69 0 SHEET 2 B 4 ARG A 50 ARG A 55 -1 N VAL A 51 O ALA A 68 SHEET 3 B 4 GLU A 161 HIS A 170 -1 O HIS A 169 N ARG A 50 SHEET 4 B 4 LEU A 156 HIS A 158 -1 N HIS A 158 O GLU A 161 SHEET 1 C 2 HIS A 61 THR A 63 0 SHEET 2 C 2 THR A 81 PRO A 83 -1 O PHE A 82 N GLY A 62
LINK SG CYS A 138 CAC CYC A 203 1555 1555 1.84
SITE 1 AC1 18 LYS A 52 TYR A 54 PHE A 82 GLY A 85 SITE 2 AC1 18 ASP A 86 ILE A 87 PRO A 88 ALA A 91 SITE 3 AC1 18 PHE A 95 SER A 112 ARG A 133 PRO A 134 SITE 4 AC1 18 VAL A 135 ASP A 136 CYS A 138 HIS A 139 SITE 5 AC1 18 TYR A 142 LEU A 165
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000