10 20 30 40 50 60 70 80 2KL7 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN, STRUCTURAL PROTEIN 30-JUN-09 2KL7
TITLE SOLUTION NMR STRUCTURE OF THE EGF-LIKE 1 DOMAIN OF HUMAN TITLE 2 FIBULIN-4. NORTHEAST STRUCTURAL GENOMICS TARGET HR6275
COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBULIN-4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: EGF-LIKE 1 DOMAIN; COMPND 5 SYNONYM: EGF-CONTAINING FIBULIN-LIKE EXTRACELLULAR MATRIX COMPND 6 PROTEIN 2, FIBL-4, PROTEIN UPH1; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: EFEMP2, FBLN4, UNQ200/PRO226; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: NA
KEYWDS SECRETED, CALCIUM, DISEASE MUTATION, DISULFIDE BOND, EGF- KEYWDS 2 LIKE DOMAIN, GLYCOPROTEIN, POLYMORPHISM, STRUCTURAL KEYWDS 3 GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 4 STRUCTURAL GENOMICS CONSORTIUM, NESG, METAL BINDING KEYWDS 5 PROTEIN, SIGNALING PROTEIN, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.ROSSI,Y.CHIANG,S.ANDERSON,G.T.MONTELIONE,NORTHEAST AUTHOR 2 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 21-JUL-09 2KL7 0
JRNL AUTH P.ROSSI,Y.CHIANG,S.ANDERSON,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE EGF-LIKE 1 DOMAIN OF JRNL TITL 2 HUMAN FIBULIN-4. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 TARGET HR6275 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOESY ASSIGNMENTS BY CYANA-3.0. 20 REMARK 3 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED WITH CYANA- REMARK 3 3.0. SELECTED MODELS ARE FURTHER REFINED USING CNS IN EXPLICIT REMARK 3 WATER SHELL (NILGES PROTOCOL WITH PARAM19). STRUCTURE BASED ON REMARK 3 776 NOE, 106 DIHE. MAX NOE VIOLATION: 0.23 A (1MODEL); MAX REMARK 3 DIHE VIOLATION: 7.1 DEG. 1 TOTAL CLOSE CONTACTS PER 20 MODELS. REMARK 3 STRUCTURE QUALITY FACTOR (PSVS 1.3): ORDERED RESIDUES RANGES: REMARK 3 11-34,53-66 (FINDCORE). SECONDARY STRUCTURE - BETA STRANDS: REMARK 3 17-21, 25-29, 61-63. RMSD(ANG): BACKBONE 1.0, ALL HEAVY ATOMS REMARK 3 1.3. RAMA. DISTRIBUTION: 94.1/5.9/0.0/0.0. PROCHECK (PSI-PHI): REMARK 3 -0.38/-1.18 (RAW/Z), PROCHECK (ALL): -0.22/-1.30 (RAW/Z), REMARK 3 MOLPROBITY CLASH: 16.14/-1.24 (RAW/Z). RPF SCORES ALL ASSIGNED REMARK 3 RESIDUES (FIT OF NOESY PEAKLISTS TO STRUCTURE): RECALL: 0.880, REMARK 3 PRECISION: 0.916, F-MEASURE: 0.898, DP-SCORE: 0.651.
REMARK 4 REMARK 4 2KL7 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-09. REMARK 100 THE RCSB ID CODE IS RCSB101258.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 150 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 50 UM REMARK 210 DSS, 90% H2O/10% D2O; 0.3 MM REMARK 210 [U-100% 15N] PROTEIN, 150 MM REMARK 210 SODIUM CHLORIDE, 20 MM MES, 50 REMARK 210 UM DSS, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HBHA(CO) REMARK 210 NH; 3D HN(CA)CO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HCCH-TOCSY; 3D HCCH-COSY; 3D REMARK 210 CCH-TOCSY; 2D 1H-15N HMQC; 2D REMARK 210 1H-15N HET_NOE; 1D 15N_T1 REMARK 210 SERIES; 1D 15N_T2 SERIES REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, NMRPIPE, TOPSPIN REMARK 210 2.1, PSVS 1.3, SPARKY 2.113, REMARK 210 PINE, MOLMOL, PYMOL, PDBSTAT REMARK 210 5.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT REMARK 210 SCATTERING AND BY NMR. T1/T2(CPMG) T1=664.9 MS T2=128.48 MS REMARK 210 TAUC=4.8 NS. CONSISTENT WITH MOLECULAR WEIGHT OF MONOMERIC REMARK 210 UNIT. STRUCTURE DETERMINED BY TRIPLE RESONANCE NMR REMARK 210 SPECTROSCOPY. ASSIGNMENT STATS (ALL RESIDUES INCLUDED): REMARK 210 BACKBONE 91.89%, SIDECHAIN 83.74%, AROMATIC (SC) 100%. REMARK 210 UNAMBIGUOUS SIDECHAIN NH2 100%.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 6 25.37 -75.55 REMARK 500 1 PRO A 10 43.91 -70.20 REMARK 500 1 ARG A 31 7.82 -69.43 REMARK 500 1 ILE A 36 -166.93 -121.39 REMARK 500 1 LEU A 39 51.11 -102.78 REMARK 500 2 ASP A 2 -76.24 -124.56 REMARK 500 2 PRO A 10 103.56 -37.80 REMARK 500 2 ILE A 36 -151.56 -125.60 REMARK 500 3 CYS A 6 4.42 -65.16 REMARK 500 3 PRO A 10 94.91 -61.63 REMARK 500 3 ARG A 31 0.46 -69.93 REMARK 500 3 ILE A 36 -161.95 -77.85 REMARK 500 3 HIS A 40 117.25 -173.73 REMARK 500 3 GLN A 52 -20.55 174.08 REMARK 500 3 SER A 68 103.28 58.90 REMARK 500 3 CYS A 69 105.01 -59.16 REMARK 500 3 VAL A 70 90.27 74.64 REMARK 500 4 ASP A 2 -79.96 -115.49 REMARK 500 4 CYS A 6 -37.61 69.61 REMARK 500 4 LEU A 7 35.65 -76.24 REMARK 500 4 PRO A 10 65.56 -65.16 REMARK 500 5 PRO A 10 79.77 -57.52 REMARK 500 5 VAL A 35 45.67 -80.57 REMARK 500 5 ILE A 36 -166.32 -68.74 REMARK 500 5 ASN A 37 -83.24 -75.27 REMARK 500 5 ASP A 38 114.85 -165.93 REMARK 500 5 LEU A 39 61.25 -110.61 REMARK 500 5 PRO A 47 86.30 -61.02 REMARK 500 6 PRO A 10 82.33 -55.61 REMARK 500 6 ASP A 38 115.19 60.60 REMARK 500 6 GLN A 52 31.15 -80.06 REMARK 500 6 PRO A 58 150.80 -49.10 REMARK 500 7 GLU A 5 -158.43 -92.04 REMARK 500 7 THR A 8 177.37 -58.98 REMARK 500 7 PRO A 10 72.14 -64.29 REMARK 500 7 VAL A 35 25.83 42.67 REMARK 500 7 HIS A 40 -6.18 67.79 REMARK 500 7 ALA A 51 115.57 -178.13 REMARK 500 7 GLN A 52 83.04 -69.54 REMARK 500 7 SER A 68 96.56 -61.81 REMARK 500 8 CYS A 6 31.38 -83.03 REMARK 500 8 PRO A 10 77.08 -65.61 REMARK 500 8 ASN A 37 88.92 -64.53 REMARK 500 9 PRO A 10 78.60 -67.66 REMARK 500 10 PRO A 10 77.40 -57.04 REMARK 500 10 PRO A 47 79.27 -63.93 REMARK 500 10 ALA A 51 34.89 -82.93 REMARK 500 11 GLU A 5 47.81 -76.60 REMARK 500 11 CYS A 6 -3.32 66.04 REMARK 500 11 PRO A 10 90.84 -60.38 REMARK 500 11 VAL A 35 32.18 -83.39 REMARK 500 11 ASN A 37 86.87 -69.86 REMARK 500 11 HIS A 40 -70.05 -138.33 REMARK 500 11 GLU A 42 119.81 -171.14 REMARK 500 11 PRO A 59 139.23 -39.50 REMARK 500 12 CYS A 6 38.87 -80.98 REMARK 500 12 PRO A 10 72.50 -50.40 REMARK 500 12 PRO A 49 63.08 -112.80 REMARK 500 13 VAL A 3 85.32 -64.90 REMARK 500 13 CYS A 6 24.81 -77.84 REMARK 500 13 PRO A 10 90.04 -52.18 REMARK 500 13 ASN A 37 36.65 -93.14 REMARK 500 13 VAL A 70 93.18 -68.20 REMARK 500 14 PRO A 10 85.65 -61.36 REMARK 500 14 ILE A 36 8.98 -150.83 REMARK 500 14 PRO A 47 67.05 -69.17 REMARK 500 14 CYS A 69 -55.68 -176.32 REMARK 500 15 PRO A 10 80.69 -60.71 REMARK 500 15 ASN A 37 171.74 175.31 REMARK 500 15 PRO A 47 20.34 -77.48 REMARK 500 16 PRO A 47 76.85 -67.62 REMARK 500 17 ASP A 2 48.15 -81.24 REMARK 500 17 VAL A 3 74.63 58.00 REMARK 500 17 ASN A 4 138.25 -173.45 REMARK 500 17 PRO A 10 78.05 -58.91 REMARK 500 17 VAL A 35 46.87 -78.34 REMARK 500 17 ASP A 38 92.63 55.37 REMARK 500 17 ASP A 67 109.41 67.20 REMARK 500 18 PRO A 10 87.62 -66.42 REMARK 500 18 LEU A 39 -70.06 29.15 REMARK 500 18 PRO A 47 86.28 -57.56 REMARK 500 19 ASP A 2 -62.30 -92.66 REMARK 500 19 CYS A 6 9.70 -68.25 REMARK 500 19 PRO A 10 70.42 -66.92 REMARK 500 19 ASN A 37 90.34 -67.34 REMARK 500 19 PRO A 47 106.74 -54.75 REMARK 500 19 ALA A 51 47.83 -84.08 REMARK 500 19 ASP A 67 -74.64 165.94 REMARK 500 19 SER A 68 -72.61 58.75 REMARK 500 20 GLU A 5 -169.66 -78.26 REMARK 500 20 PRO A 10 76.22 -63.55 REMARK 500 20 ASN A 37 -89.80 62.13 REMARK 500 20 PRO A 47 80.31 -63.06 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16386 RELATED DB: BMRB REMARK 900 RELATED ID: HR6275 RELATED DB: TARGETDB
DBREF 2KL7 A 2 71 UNP O95967 FBLN4_HUMAN 54 123
SEQADV 2KL7 SER A 1 UNP O95967 EXPRESSION TAG
SEQRES 1 A 71 SER ASP VAL ASN GLU CYS LEU THR ILE PRO GLU ALA CYS SEQRES 2 A 71 LYS GLY GLU MET LYS CYS ILE ASN HIS TYR GLY GLY TYR SEQRES 3 A 71 LEU CYS LEU PRO ARG SER ALA ALA VAL ILE ASN ASP LEU SEQRES 4 A 71 HIS GLY GLU GLY PRO PRO PRO PRO VAL PRO PRO ALA GLN SEQRES 5 A 71 HIS PRO ASN PRO CYS PRO PRO GLY TYR GLU PRO ASP ASP SEQRES 6 A 71 GLN ASP SER CYS VAL ASP
SHEET 1 A 3 TYR A 26 PRO A 30 0 SHEET 2 A 3 GLU A 16 ASN A 21 -1 N MET A 17 O LEU A 29 SHEET 3 A 3 TYR A 61 ASP A 64 -1 O ASP A 64 N LYS A 18
SSBOND 1 CYS A 6 CYS A 69 1555 1555 2.03 SSBOND 2 CYS A 13 CYS A 28 1555 1555 2.03 SSBOND 3 CYS A 19 CYS A 57 1555 1555 2.03
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000