10 20 30 40 50 60 70 80 2KKQ - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 29-JUN-09 2KKQ
TITLE SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 DOMAIN OF TITLE 2 HUMAN MYOTILIN. NORTHEAST STRUCTURAL GENOMICS TARGET TITLE 3 HR3158.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOTILIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: IG-LIKE C2-TYPE 2 DOMAIN; COMPND 5 SYNONYM: TITIN IMMUNOGLOBULIN DOMAIN PROTEIN, MYOFIBRILLAR COMPND 6 TITIN-LIKE IG DOMAINS PROTEIN, 57 KDA CYTOSKELETAL PROTEIN; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYOT, TTID; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 14-15C
KEYWDS UNKNOWN FUNCTION, ACTIN-BINDING, CELL MEMBRANE, CYTOPLASM, KEYWDS 2 CYTOSKELETON, DISEASE MUTATION, IMMUNOGLOBULIN DOMAIN, KEYWDS 3 LIMB-GIRDLE MUSCULAR DYSTROPHY, MEMBRANE, MUSCLE PROTEIN, KEYWDS 4 POLYMORPHISM, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 5 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 6 STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.ROSSI,R.SHASTRY,C.CICCOSANTI,K.HAMILTON,R.XIAO,T.B.ACTON, AUTHOR 2 G.V.T.SWAPNA,R.NAIR,J.K.EVERETT,B.ROST,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 07-JUL-09 2KKQ 0
JRNL AUTH P.ROSSI,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF THE IG-LIKE C2-TYPE 2 JRNL TITL 2 DOMAIN OF HUMAN MYOTILIN. NORTHEAST STRUCTURAL JRNL TITL 3 GENOMICS TARGET HR3158. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 20 OF 100 STRUCTURES LOWEST TARGET REMARK 3 FUNCTION SELECTED WITH CYANA-3.0. SELECTED MODELS ARE FURTHER REMARK 3 REFINED USING CNS IN EXPLICIT WATER SHELL (NILGES PROTOCOL REMARK 3 WITH PARAM19). STRUCTURE BASED ON 2412 NOE, 230 DIHE. MAX NOE REMARK 3 VIOLATION: 0.23 A (1MODEL); MAX DIHE VIOLATION: 8.1 DEG. 3 REMARK 3 TOTAL CLOSE CONTACTS PER 20 MODELS. STRUCTURE QUALITY FACTOR REMARK 3 (PSVS 1.3): ORDERED RESIDUES RANGES: 11-112 FOR [S(PHI)+S(PSI) REMARK 3 ] > 1.8. SECONDARY STRUCTURE - BETA STRANDS: 25-28, 31-38, 46- REMARK 3 51, 54-55, 63-67, 72-80, 86-94, 97-108 RMSD(ANG): BACKBONE REMARK 3 0.4, ALL HEAVY ATOMS 0.7. RAMA. DISTRIBUTION: 94.7/5.1/0.2/ REMARK 3 0.0. PROCHECK (PSI-PHI): -0.39/-1.22 (RAW/Z), PROCHECK (ALL): REMARK 3 -0.23/-1.36 (RAW/Z), MOLPROBITY CLASH: 14.45/-1.01 (RAW/Z). REMARK 3 RPF SCORES ALL ASSIGNED RESIDUES (FIT OF NOESY PEAKLISTS TO REMARK 3 STRUCTURE): RECALL: 0.892, PRECISION: 0.934, F-MEASURE: 0.913, REMARK 3 DP-SCORE: 0.76.
REMARK 4 REMARK 4 2KKQ COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB101241.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.87 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN, 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 50 UM REMARK 210 DSS, 10 MM DTT, 0.02 % SODIUM REMARK 210 AZIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 90% H2O/10% D2O; 0.68 MM [U-5% REMARK 210 13C] PROTEIN, 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM MES, 50 UM REMARK 210 DSS, 10 MM DTT, 0.02 % SODIUM REMARK 210 AZIDE, 5 MM CALCIUM CHLORIDE, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CBCA(CO)NH; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -COSY; 3D CCH-TOCSY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 3D REMARK 210 HNCO; 3D HN(CA)CO; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 2D 1H- REMARK 210 13C HSQC HIRES; 2D 1H-15N HET_ REMARK 210 NOE; 1D 15N_T1 SERIES; 1D 15N_ REMARK 210 T2 SERIES REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 3.0, TOPSPIN 2.1, REMARK 210 SPARKY 2.113, NMRPIPE, PINE, REMARK 210 MOLMOL, PSVS 1.3, PYMOL, REMARK 210 PDBSTAT 5.1 REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT REMARK 210 SCATTERING AND BY NMR. T1/T2(CPMG). CONSISTENT WITH MOLECULAR REMARK 210 WEIGHT OF MONOMERIC UNIT. STRUCTURE DETERMINED BY TRIPLE REMARK 210 RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY CYANA-3.0. REMARK 210 ASSIGNMENT STATS (ALL RESIDUES INCLUDED): BACKBONE 90.16%, REMARK 210 SIDECHAIN 76.91%, AROMATIC (SC) 100%, STEREOSPECIFIC VL METHYL REMARK 210 ASSIGNMENT 100%, UNAMBIGUOUS SIDECHAIN NH2 100%.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 114 100.40 -58.50 REMARK 500 2 HIS A 4 101.95 -52.11 REMARK 500 2 SER A 9 89.03 -160.77 REMARK 500 2 ASN A 53 -14.21 73.67 REMARK 500 2 LEU A 115 151.06 66.91 REMARK 500 3 HIS A 3 -69.76 65.71 REMARK 500 3 HIS A 4 -79.38 63.58 REMARK 500 3 HIS A 6 47.16 -84.36 REMARK 500 3 HIS A 10 69.59 -152.86 REMARK 500 3 GLU A 29 108.98 -56.83 REMARK 500 3 ASN A 53 -8.02 79.57 REMARK 500 4 HIS A 3 85.29 -56.92 REMARK 500 4 ASN A 53 7.08 80.97 REMARK 500 4 ASN A 59 37.20 -82.41 REMARK 500 4 LEU A 115 95.07 61.06 REMARK 500 5 HIS A 4 -7.30 74.00 REMARK 500 5 HIS A 6 97.96 -53.65 REMARK 500 5 ASN A 53 -2.49 75.89 REMARK 500 5 ASN A 59 37.95 -90.49 REMARK 500 6 HIS A 4 -61.15 -107.03 REMARK 500 6 HIS A 8 85.71 -68.10 REMARK 500 8 SER A 9 -163.26 -122.97 REMARK 500 8 ASN A 53 -12.93 76.36 REMARK 500 8 ASN A 59 45.14 -82.16 REMARK 500 8 LEU A 115 75.74 55.19 REMARK 500 9 HIS A 5 90.88 63.43 REMARK 500 9 LEU A 115 83.73 60.54 REMARK 500 11 HIS A 8 -160.35 -100.46 REMARK 500 12 HIS A 10 10.86 -149.87 REMARK 500 12 ASN A 59 37.18 -84.03 REMARK 500 13 HIS A 3 -60.31 70.22 REMARK 500 13 HIS A 5 147.43 -173.39 REMARK 500 13 HIS A 8 -155.69 -133.23 REMARK 500 13 SER A 9 127.15 68.07 REMARK 500 13 ASN A 53 -4.92 71.37 REMARK 500 13 LEU A 115 107.90 60.97 REMARK 500 14 HIS A 4 3.11 -69.88 REMARK 500 14 HIS A 5 96.46 -55.47 REMARK 500 14 HIS A 7 78.86 -67.86 REMARK 500 14 ASN A 59 32.08 -95.32 REMARK 500 15 LEU A 115 100.60 61.20 REMARK 500 16 HIS A 4 107.32 -57.50 REMARK 500 16 HIS A 8 143.39 -178.87 REMARK 500 16 GLU A 29 105.65 -57.04 REMARK 500 16 ASN A 53 -13.75 71.80 REMARK 500 16 LEU A 115 80.49 58.20 REMARK 500 17 HIS A 6 -89.18 -131.91 REMARK 500 17 ASN A 53 -12.47 73.61 REMARK 500 17 THR A 114 -55.10 -126.41 REMARK 500 17 LEU A 115 84.33 59.56 REMARK 500 18 HIS A 3 49.21 -86.52 REMARK 500 18 HIS A 8 39.61 -147.88 REMARK 500 18 ASN A 59 33.70 -73.69 REMARK 500 20 HIS A 6 130.59 -175.16 REMARK 500 20 ASN A 59 5.48 -65.11 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16370 RELATED DB: BMRB REMARK 900 RELATED ID: HR3158 RELATED DB: TARGETDB
DBREF 2KKQ A 11 116 UNP Q9UBF9 MYOTI_HUMAN 344 449
SEQADV 2KKQ MET A 1 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ GLY A 2 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 3 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 4 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 5 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 6 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 7 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 8 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ SER A 9 UNP Q9UBF9 EXPRESSION TAG SEQADV 2KKQ HIS A 10 UNP Q9UBF9 EXPRESSION TAG
SEQRES 1 A 116 MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLU HIS LYS SEQRES 2 A 116 ARG ALA PRO MET PHE ILE TYR LYS PRO GLN SER LYS LYS SEQRES 3 A 116 VAL LEU GLU GLY ASP SER VAL LYS LEU GLU CYS GLN ILE SEQRES 4 A 116 SER ALA ILE PRO PRO PRO LYS LEU PHE TRP LYS ARG ASN SEQRES 5 A 116 ASN GLU MET VAL GLN PHE ASN THR ASP ARG ILE SER LEU SEQRES 6 A 116 TYR GLN ASP ASN THR GLY ARG VAL THR LEU LEU ILE LYS SEQRES 7 A 116 ASP VAL ASN LYS LYS ASP ALA GLY TRP TYR THR VAL SER SEQRES 8 A 116 ALA VAL ASN GLU ALA GLY VAL THR THR CYS ASN THR ARG SEQRES 9 A 116 LEU ASP VAL THR ALA ARG PRO ASN GLN THR LEU PRO
HELIX 1 1 ASN A 81 ALA A 85 5 5
SHEET 1 A 5 LYS A 25 LEU A 28 0 SHEET 2 A 5 GLY A 97 THR A 108 1 O ASP A 106 N LYS A 25 SHEET 3 A 5 GLY A 86 ASN A 94 -1 N TYR A 88 O THR A 103 SHEET 4 A 5 LYS A 46 ARG A 51 -1 N PHE A 48 O SER A 91 SHEET 5 A 5 GLU A 54 MET A 55 -1 O GLU A 54 N ARG A 51 SHEET 1 B 3 ASP A 31 GLN A 38 0 SHEET 2 B 3 ARG A 72 VAL A 80 -1 O LEU A 75 N LEU A 35 SHEET 3 B 3 ILE A 63 GLN A 67 -1 N SER A 64 O LEU A 76
CISPEP 1 ILE A 42 PRO A 43 1 -0.83 CISPEP 2 ILE A 42 PRO A 43 2 -1.40 CISPEP 3 ILE A 42 PRO A 43 3 -3.29 CISPEP 4 ILE A 42 PRO A 43 4 -3.18 CISPEP 5 ILE A 42 PRO A 43 5 -2.67 CISPEP 6 ILE A 42 PRO A 43 6 -2.77 CISPEP 7 ILE A 42 PRO A 43 7 -0.61 CISPEP 8 ILE A 42 PRO A 43 8 -2.22 CISPEP 9 ILE A 42 PRO A 43 9 -1.60 CISPEP 10 ILE A 42 PRO A 43 10 -3.82 CISPEP 11 ILE A 42 PRO A 43 11 -1.46 CISPEP 12 ILE A 42 PRO A 43 12 -3.99 CISPEP 13 ILE A 42 PRO A 43 13 -0.77 CISPEP 14 ILE A 42 PRO A 43 14 -3.51 CISPEP 15 ILE A 42 PRO A 43 15 -2.91 CISPEP 16 ILE A 42 PRO A 43 16 -1.30 CISPEP 17 ILE A 42 PRO A 43 17 -2.57 CISPEP 18 ILE A 42 PRO A 43 18 -3.41 CISPEP 19 ILE A 42 PRO A 43 19 -3.90 CISPEP 20 ILE A 42 PRO A 43 20 -1.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000