10 20 30 40 50 60 70 80 2KKM - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSLATION 26-JUN-09 2KKM
TITLE SOLUTION NMR STRUCTURE OF YEAST PROTEIN YOR252W [RESIDUES TITLE 2 38-178]: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TITLE 3 YT654
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSLATION MACHINERY-ASSOCIATED PROTEIN 16; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 38-178; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: TMA16, YOR242W, YOR252W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B
KEYWDS TRANSLATION MACHINERY ASSOCIATED PROTEIN 16, NUCLEUS, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.R.CORT,A.YEE,C.LIU,C.H.ARROWSMITH,G.T.MONTELIONE, AUTHOR 2 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 06-OCT-09 2KKM 0
JRNL AUTH J.R.CORT,A.YEE,C.LIU,C.H.ARROWSMITH,G.T.MONTELIONE, JRNL AUTH 2 M.A.KENNEDY JRNL TITL SOLUTION NMR STRUCTURE OF YEAST PROTEIN YOR252W JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AUTOSTRUCTURE, X-PLOR_NIH, PSVS, CNS REMARK 3 AUTHORS : HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), SCHWIETERS, KUSZEWSKI, TJANDRA REMARK 3 AND CLORE (X-PLOR_NIH), BHATTACHARYA AND REMARK 3 MONTELIONE (PSVS), BRUNGER, ADAMS, CLORE, GROS, REMARK 3 NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KKM COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB101237.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-99% 13C; U-99% 15N] REMARK 210 YOR252W, 300 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 0.01 % SODIUM REMARK 210 AZIDE, 93% H2O/7% D2O; 0.6 MM REMARK 210 [U-99% 13C; U-99% 15N] REMARK 210 YOR252W, 300 MM SODIUM REMARK 210 CHLORIDE, 10 MM DTT, 1 MM REMARK 210 BENZAMIDINE, 0.01 % SODIUM REMARK 210 AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D C(CO) REMARK 210 NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D REMARK 210 HNHA; 3D HN(CO)CA; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 4D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE, SPARKY REMARK 210 METHOD USED : MOLECULAR DYNAMICS, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : COMBINATION OF LOWEST ENERGY, REMARK 210 FEWEST RESTRAINT VIOLATIONS, REMARK 210 AND FAVORABLE GEOMETRY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 115 36.37 -93.24 REMARK 500 1 ASP A 131 -93.76 56.98 REMARK 500 2 ARG A 73 88.59 -157.43 REMARK 500 2 PRO A 75 101.47 -47.62 REMARK 500 2 LEU A 102 -26.78 71.45 REMARK 500 2 ASP A 131 -78.34 62.82 REMARK 500 3 LYS A 9 37.89 -86.47 REMARK 500 3 SER A 76 -72.80 -73.14 REMARK 500 3 ASP A 131 -97.13 52.94 REMARK 500 4 PHE A 36 24.80 -143.68 REMARK 500 4 PHE A 42 -165.32 -103.52 REMARK 500 4 ARG A 73 104.69 70.79 REMARK 500 4 PRO A 75 84.88 -70.00 REMARK 500 4 ASP A 131 -93.94 56.76 REMARK 500 4 LYS A 132 44.27 -100.79 REMARK 500 4 ASN A 140 -69.14 -166.73 REMARK 500 5 ALA A 8 -66.17 -121.74 REMARK 500 5 LYS A 11 -40.00 -143.38 REMARK 500 5 GLU A 20 -66.59 -102.19 REMARK 500 5 PHE A 42 -160.38 -110.22 REMARK 500 5 LEU A 102 -32.40 75.70 REMARK 500 5 ASN A 115 -157.12 -145.00 REMARK 500 5 ASP A 131 -87.77 58.31 REMARK 500 6 ALA A 8 -167.02 -101.37 REMARK 500 6 GLN A 14 95.60 65.70 REMARK 500 6 PHE A 36 14.40 -143.05 REMARK 500 6 SER A 76 -87.88 55.34 REMARK 500 6 ASP A 131 -95.37 60.32 REMARK 500 6 LYS A 132 86.47 -156.36 REMARK 500 6 ASN A 140 78.02 68.76 REMARK 500 7 ARG A 2 -167.57 -111.66 REMARK 500 7 PHE A 36 22.64 -142.12 REMARK 500 7 SER A 76 -75.48 -87.63 REMARK 500 7 ASP A 131 -71.18 66.16 REMARK 500 7 LYS A 132 -80.97 -122.93 REMARK 500 8 ILE A 6 116.95 -166.57 REMARK 500 8 GLU A 20 -66.51 -108.63 REMARK 500 8 ASP A 34 1.58 -69.53 REMARK 500 8 PHE A 36 22.87 -141.22 REMARK 500 8 PRO A 40 -71.94 -61.57 REMARK 500 8 SER A 76 -95.01 52.47 REMARK 500 8 ASP A 101 99.70 -62.24 REMARK 500 8 LYS A 132 37.05 -97.45 REMARK 500 8 VAL A 137 -61.26 -100.07 REMARK 500 9 LYS A 10 -57.95 -159.49 REMARK 500 9 HIS A 13 -39.20 -178.88 REMARK 500 9 GLU A 20 -60.18 -94.03 REMARK 500 9 ASP A 34 1.69 -63.40 REMARK 500 9 PHE A 36 29.22 -141.16 REMARK 500 9 ARG A 69 -62.10 51.48 REMARK 500 9 ASN A 72 -32.28 73.70 REMARK 500 9 ARG A 73 102.66 73.66 REMARK 500 9 ASP A 131 -104.29 46.04 REMARK 500 10 GLU A 3 -154.88 -116.55 REMARK 500 10 ASP A 4 -76.61 -70.46 REMARK 500 10 LYS A 10 32.23 -82.83 REMARK 500 10 ARG A 17 -161.23 -119.16 REMARK 500 10 PHE A 36 23.69 -142.79 REMARK 500 10 SER A 71 -73.70 65.82 REMARK 500 10 PRO A 75 85.88 -64.81 REMARK 500 10 SER A 103 -33.48 -135.27 REMARK 500 10 ASP A 131 -87.35 70.87 REMARK 500 11 LEU A 12 -84.06 -81.26 REMARK 500 11 HIS A 13 -25.53 165.95 REMARK 500 11 PHE A 36 38.37 -141.30 REMARK 500 11 PHE A 42 -169.89 -122.05 REMARK 500 11 ASP A 131 -80.98 64.23 REMARK 500 11 LYS A 132 -69.27 -104.86 REMARK 500 11 ASN A 140 75.80 56.70 REMARK 500 12 GLN A 14 76.93 55.12 REMARK 500 12 PRO A 40 -70.94 -67.70 REMARK 500 12 PRO A 75 90.07 -65.55 REMARK 500 12 ASP A 131 -91.71 50.74 REMARK 500 13 ARG A 2 -95.02 57.82 REMARK 500 13 ASP A 4 98.71 53.20 REMARK 500 13 ALA A 7 -155.71 58.73 REMARK 500 13 ALA A 8 -38.93 72.71 REMARK 500 13 HIS A 13 96.38 59.96 REMARK 500 13 GLU A 20 -61.00 -93.89 REMARK 500 13 PHE A 36 21.63 -144.08 REMARK 500 13 ARG A 70 -85.79 67.17 REMARK 500 13 SER A 71 17.98 -158.38 REMARK 500 13 SER A 76 -93.77 45.61 REMARK 500 13 LEU A 98 98.91 -69.71 REMARK 500 13 VAL A 137 -73.52 -84.51 REMARK 500 14 PHE A 36 20.27 -140.75 REMARK 500 14 LEU A 98 97.30 -68.92 REMARK 500 14 LEU A 102 -28.44 74.44 REMARK 500 14 ASP A 131 -83.32 51.99 REMARK 500 14 LYS A 132 37.57 -85.78 REMARK 500 15 PHE A 42 -162.47 -119.70 REMARK 500 15 ARG A 70 34.72 -82.16 REMARK 500 15 ARG A 73 86.28 -150.07 REMARK 500 15 LEU A 102 -16.31 75.41 REMARK 500 15 ASP A 131 -89.70 56.14 REMARK 500 15 LYS A 132 33.50 -98.91 REMARK 500 15 ASN A 140 78.86 54.51 REMARK 500 16 ASP A 15 -148.99 -137.90 REMARK 500 16 GLU A 20 -70.35 -110.50 REMARK 500 16 PHE A 36 28.80 -142.52 REMARK 500 16 SER A 103 -47.09 -178.13 REMARK 500 16 ASP A 131 -102.28 55.48 REMARK 500 16 LYS A 132 40.18 -86.12 REMARK 500 17 GLU A 20 -71.00 -115.80 REMARK 500 17 ASP A 34 1.95 -66.90 REMARK 500 17 ARG A 73 159.16 69.41 REMARK 500 17 ASP A 131 -91.98 51.38 REMARK 500 18 ASP A 4 108.71 67.27 REMARK 500 18 ALA A 7 93.83 -161.45 REMARK 500 18 LYS A 68 39.65 -84.25 REMARK 500 18 ARG A 70 -144.63 59.54 REMARK 500 18 ASN A 72 -91.90 -113.35 REMARK 500 18 PRO A 75 96.95 -60.99 REMARK 500 18 ASP A 131 -93.42 49.20 REMARK 500 19 LYS A 16 37.24 -80.55 REMARK 500 19 ARG A 69 31.23 -72.82 REMARK 500 19 ARG A 70 -70.41 -115.30 REMARK 500 19 ASP A 131 -73.74 26.62 REMARK 500 20 PHE A 42 -156.82 -115.20 REMARK 500 20 ASN A 72 -60.65 -126.54 REMARK 500 20 LEU A 102 -18.68 76.71 REMARK 500 20 ASP A 131 -82.79 58.45 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: YT654 RELATED DB: TARGETDB REMARK 900 RELATED ID: 16365 RELATED DB: BMRB
DBREF 2KKM A 1 141 UNP Q08687 TMA16_YEAST 38 178
SEQADV 2KKM GLY A -2 UNP Q08687 EXPRESSION TAG SEQADV 2KKM SER A -1 UNP Q08687 EXPRESSION TAG SEQADV 2KKM HIS A 0 UNP Q08687 EXPRESSION TAG
SEQRES 1 A 144 GLY SER HIS MET ARG GLU ASP LYS ILE ALA ALA LYS LYS SEQRES 2 A 144 LYS LEU HIS GLN ASP LYS ARG VAL HIS GLU LEU ALA ARG SEQRES 3 A 144 VAL LYS PHE MET GLN ASP VAL VAL ASN SER ASP THR PHE SEQRES 4 A 144 LYS GLY GLN PRO ILE PHE ASP HIS ALA HIS THR ARG GLU SEQRES 5 A 144 PHE ILE GLN SER PHE ILE GLU ARG ASP ASP THR GLU LEU SEQRES 6 A 144 ASP GLU LEU LYS LYS LYS ARG ARG SER ASN ARG PRO PRO SEQRES 7 A 144 SER ASN ARG GLN VAL LEU LEU GLN GLN ARG ARG ASP GLN SEQRES 8 A 144 GLU LEU LYS GLU PHE LYS ALA GLY PHE LEU CYS PRO ASP SEQRES 9 A 144 LEU SER ASP ALA LYS ASN MET GLU PHE LEU ARG ASN TRP SEQRES 10 A 144 ASN GLY THR PHE GLY LEU LEU ASN THR LEU ARG LEU ILE SEQRES 11 A 144 ARG ILE ASN ASP LYS GLY GLU GLN VAL VAL GLY GLY ASN SEQRES 12 A 144 GLU
HELIX 1 1 ARG A 17 SER A 33 1 17 HELIX 2 2 ASP A 43 ARG A 69 1 27 HELIX 3 3 ARG A 70 ASN A 72 5 3 HELIX 4 4 ASN A 77 ALA A 95 1 19 HELIX 5 5 ASP A 104 ASN A 113 1 10 HELIX 6 6 GLY A 119 LEU A 124 1 6
SHEET 1 A 3 PHE A 97 PRO A 100 0 SHEET 2 A 3 LEU A 126 ASN A 130 -1 O ILE A 129 N PHE A 97 SHEET 3 A 3 GLU A 134 GLN A 135 -1 O GLU A 134 N ASN A 130
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000