10 20 30 40 50 60 70 80 2KK8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-JUN-09 2KK8
TITLE NMR SOLUTION STRUCTURE OF A PUTATIVE UNCHARACTERIZED PROTEIN TITLE 2 OBTAINED FROM ARABIDOPSIS THALIANA: NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET AR3449A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN AT4G05270; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 1-74; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT4G05270; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-23C
KEYWDS SOLUTION NMR, ARABIDOPSIS THALIANA, AR3449A, UNCHARACTERIZED KEYWDS 2 PUTATIVE PROTEIN, NESG, STRUCTURAL GENOMICS, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.MANI,S.V.T.GURLA,R.SHASTRY,C.CICCOSANTI,E.FOOTE,M.JIANG, AUTHOR 2 R.XIAO,R.NAIR,J.EVERETT,Y.HUANG,T.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG)
REVDAT 1 30-JUN-09 2KK8 0
JRNL AUTH R.MANI,S.V.T.GURLA,R.SHASTRY,C.CICCOSANTI,E.FOOTE, JRNL AUTH 2 M.JIANG,R.XIAO,R.NAIR,J.EVERETT,Y.HUANG,T.ACTON, JRNL AUTH 3 B.ROST,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF A PUTATIVE JRNL TITL 2 UNCHARACTERIZED PROTEIN OBTAINED FROM ARABIDOPSIS JRNL TITL 3 THALIANA: NORTHEAST STRUCTURAL GENOMICS CONSORTIUM JRNL TITL 4 TARGET AR3449A JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS OBTAINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. GFT-NMR EXPERIMENTS WERE REMARK 3 USED FOR BACKBONE ASSIGNMENTS. AUTOMATED NOESY ASSIGNMENTS REMARK 3 WERE MADE USING AUTOSTRUCTURE AND CYANA-2.1. DIHEDRAL ANGLE REMARK 3 CONSTRAINTS WERE OBTEINED FROM TALOS. THE ASSIGNMENTS WERE REMARK 3 VALIDATED USING AVS SOFTWARE. FINAL STRUCTURE FACTORS REMARK 3 DETERMINED USING PSVS: ORDERED RESIDUES: ALPHA HELICES- 33.44, REMARK 3 67-70, BETA STRANDS- 22-27, 11-17, 78-82, 51-55, 58-59. REMARK 3 RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: 89.1% MOST REMARK 3 FAVOURED REGIONS, 10.9% ADDITIONALLY FAVOURED REGIONS. REMARK 3 PROCHECK SCORES FOR ORDERED RESIDUES (RAW/Z): PHI/PSI -0.43/- REMARK 3 1.38, ALL -0.18/-1.06, MOLPROBITY CLASHSCORES- 21.46/-2.16. REMARK 3 RPF SCORE FOR GOODNESS FIT TO THE NOESY DATA: RECALL-0.998, REMARK 3 PRECISION-0.93, FINAL DP-SCORE-0.869
REMARK 4 REMARK 4 2KK8 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB101223.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.11 MM [U-100% 13C; U-100% REMARK 210 15N] AR3449A, 90% H2O/10% D2O; REMARK 210 1.22 MM [U-10% 13C; U-100% REMARK 210 15N] AR3449A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 ALIPHATIC NOESY; 3D 1H-13C REMARK 210 AROMATIC NOESY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; (4, REMARK 210 3)D GFT-HNNCABCA; (4,3)D GFT- REMARK 210 CABCA(CO)NHN; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D H(CCO)NH; REMARK 210 3D HCCH-TOCSY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.2.1, CYANA REMARK 210 2.1, AUTOASSIGN 2.4.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 3 94.74 62.78 REMARK 500 1 LEU A 61 67.30 -112.87 REMARK 500 2 HIS A 4 96.53 -58.77 REMARK 500 2 HIS A 10 130.42 178.36 REMARK 500 2 ASP A 56 -73.58 71.48 REMARK 500 2 PRO A 74 42.29 -74.50 REMARK 500 3 ASP A 56 -72.87 66.49 REMARK 500 4 HIS A 3 97.47 -65.74 REMARK 500 4 SER A 83 98.36 -66.97 REMARK 500 5 PRO A 47 153.93 -48.05 REMARK 500 5 ASP A 56 -63.67 69.73 REMARK 500 6 HIS A 10 73.51 60.54 REMARK 500 6 ASP A 56 -16.06 73.09 REMARK 500 6 ARG A 62 -65.47 -126.99 REMARK 500 6 GLU A 63 -29.08 71.32 REMARK 500 6 ASP A 77 99.77 -63.38 REMARK 500 7 ASP A 56 -74.52 69.71 REMARK 500 8 HIS A 3 45.37 -142.77 REMARK 500 10 HIS A 8 17.73 -153.63 REMARK 500 10 ASP A 56 -56.85 72.56 REMARK 500 13 HIS A 8 100.93 -58.20 REMARK 500 13 HIS A 10 99.46 -167.05 REMARK 500 13 ASP A 56 -76.65 69.09 REMARK 500 13 GLN A 71 74.41 59.13 REMARK 500 14 HIS A 10 84.85 -161.70 REMARK 500 15 HIS A 8 39.14 -140.40 REMARK 500 15 HIS A 10 118.76 177.21 REMARK 500 15 ASP A 56 -69.66 70.55 REMARK 500 16 HIS A 3 108.59 -162.52 REMARK 500 16 HIS A 10 85.33 53.54 REMARK 500 17 HIS A 8 133.33 176.60 REMARK 500 17 HIS A 10 107.42 176.39 REMARK 500 17 ASP A 56 -77.61 65.77 REMARK 500 18 ASP A 56 -70.58 72.13 REMARK 500 18 GLN A 71 80.28 64.91 REMARK 500 19 ASP A 56 -23.27 74.46 REMARK 500 19 GLN A 71 62.30 60.25 REMARK 500 20 HIS A 5 94.77 -67.68 REMARK 500 20 HIS A 10 118.67 -169.93 REMARK 500 20 ASP A 56 -66.83 67.76 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR3449A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16355 RELATED DB: BMRB
DBREF 2KK8 A 11 84 UNP Q9M0W8 Q9M0W8_ARATH 1 74
SEQADV 2KK8 MET A 1 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 GLY A 2 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 3 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 4 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 5 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 6 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 7 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 8 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 SER A 9 UNP Q9M0W8 EXPRESSION TAG SEQADV 2KK8 HIS A 10 UNP Q9M0W8 EXPRESSION TAG
SEQRES 1 A 84 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET LYS PHE SEQRES 2 A 84 LEU VAL GLU ASN LEU ASN GLY SER SER PHE GLU LEU GLU SEQRES 3 A 84 VAL ASP TYR ARG ASP THR LEU LEU VAL VAL LYS GLN LYS SEQRES 4 A 84 ILE GLU ARG SER GLN HIS ILE PRO VAL SER LYS GLN THR SEQRES 5 A 84 LEU ILE VAL ASP GLY ILE VAL ILE LEU ARG GLU ASP LEU SEQRES 6 A 84 THR VAL GLU GLN CYS GLN ILE VAL PRO THR SER ASP ILE SEQRES 7 A 84 GLN LEU GLU VAL SER SER
HELIX 1 1 THR A 32 HIS A 45 1 14 HELIX 2 2 PRO A 47 SER A 49 5 3 HELIX 3 3 THR A 66 GLN A 71 1 6
SHEET 1 A 5 SER A 22 VAL A 27 0 SHEET 2 A 5 MET A 11 ASN A 17 -1 N VAL A 15 O PHE A 23 SHEET 3 A 5 ILE A 78 VAL A 82 1 O LEU A 80 N GLU A 16 SHEET 4 A 5 GLN A 51 VAL A 55 -1 N ILE A 54 O GLN A 79 SHEET 5 A 5 ILE A 58 VAL A 59 -1 O ILE A 58 N VAL A 55
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000