10 20 30 40 50 60 70 80 2KJK - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 29-MAY-09 2KJK
TITLE SOLUTION STRUCTURE OF THE SECOND DOMAIN OF THE LISTERIA TITLE 2 PROTEIN LIN2157, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TITLE 3 TARGET LKR136B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIN2157 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA INNOCUA; SOURCE 3 ORGANISM_TAXID: 1642; SOURCE 4 GENE: LIN2157; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET121
KEYWDS PDZ DOMAIN, STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, KEYWDS 3 UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 10
AUTHOR X.WANG,K.HAMILTON,R.H.XIAO,D.LEE,C.H.CICCOSANTI,R.NAIR, AUTHOR 2 B.ROST,T.B.ACTON,G.SWAPNA,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 J.H.PRESTEGARD,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG)
REVDAT 1 07-JUL-09 2KJK 0
JRNL AUTH X.WANG,G.T.MONTELIONE,J.PRESTEGARD JRNL TITL SOLUTION STRUCTURE OF LKR136B JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: STRUCTURES WERE FIRST CALCULATED REMARK 3 USING CYANA'S AUTOMATIC NOE ASSIGNMENT MODULE, WHICH IS REMARK 3 SIMULATED ANNEALING BASED. THEY WERE THEN REFINED IN XPLOR-NIH REMARK 3 USING SIMULATED ANNEALING REFINEMENT PROTOCOL
REMARK 4 REMARK 4 2KJK COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUN-09. REMARK 100 THE RCSB ID CODE IS RCSB101199.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.2 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.18 MM [U-100% 13C; U-100% REMARK 210 15N] LKR136B, 10 MM DTT, 0.02 REMARK 210 % SODIUM AZIDE, 200 MM SODIUM REMARK 210 CHLORIDE, 20 MM SODIUM REMARK 210 ACETATE, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O; REMARK 210 1.18 MM [U-100% 13C; U-100% REMARK 210 15N] LKR136B, 4 % REMARK 210 PENTAETHYLENE GLYCOL REMARK 210 MONODODECYL ETHER, 200 MM REMARK 210 SODIUM CHLORIDE, 0.02 % SODIUM REMARK 210 AZIDE, 10 MM DTT, 20 MM SODIUM REMARK 210 ACETATE, 5 MM CALCIUM REMARK 210 CHLORIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY; 2D REMARK 210 HSQC/TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, NMRVIEW REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 6 55.01 -168.36 REMARK 500 1 ASP A 7 81.35 -150.25 REMARK 500 1 GLU A 16 64.29 -64.94 REMARK 500 1 ASP A 17 45.68 -175.97 REMARK 500 1 ASP A 34 20.14 41.57 REMARK 500 1 PHE A 38 -26.14 -148.27 REMARK 500 1 LYS A 39 -108.37 -167.28 REMARK 500 1 SER A 40 -141.80 -110.69 REMARK 500 1 ASP A 55 -165.25 -67.85 REMARK 500 1 ASP A 91 58.14 -163.21 REMARK 500 1 ASP A 92 107.64 57.99 REMARK 500 1 LEU A 93 -83.24 -47.18 REMARK 500 1 GLU A 94 -165.53 49.90 REMARK 500 1 HIS A 96 75.28 40.53 REMARK 500 1 HIS A 97 90.71 -166.70 REMARK 500 1 HIS A 99 -55.12 -168.75 REMARK 500 2 LYS A 3 -35.91 -138.72 REMARK 500 2 TYR A 6 70.29 50.30 REMARK 500 2 ASP A 7 -130.16 -123.52 REMARK 500 2 LYS A 15 -108.75 -39.49 REMARK 500 2 GLU A 16 20.01 -159.61 REMARK 500 2 ASP A 17 -68.06 -169.02 REMARK 500 2 VAL A 18 148.20 4.46 REMARK 500 2 PRO A 19 9.18 -56.70 REMARK 500 2 SER A 50 37.14 -78.06 REMARK 500 2 ASP A 55 -168.91 -62.08 REMARK 500 2 ASP A 91 68.23 -163.38 REMARK 500 2 ASP A 92 -79.62 -44.45 REMARK 500 2 GLU A 94 116.31 57.04 REMARK 500 2 HIS A 98 -34.30 -148.25 REMARK 500 3 LYS A 3 -77.64 -153.39 REMARK 500 3 THR A 5 -107.29 -68.16 REMARK 500 3 ASP A 7 -78.33 -70.12 REMARK 500 3 ASP A 34 16.91 48.97 REMARK 500 3 SER A 37 106.37 58.09 REMARK 500 3 PHE A 38 -1.05 -174.18 REMARK 500 3 SER A 50 46.48 -92.33 REMARK 500 3 ASP A 91 38.73 -155.94 REMARK 500 3 HIS A 96 -86.58 54.08 REMARK 500 3 HIS A 97 72.87 -65.96 REMARK 500 3 HIS A 98 -122.90 51.48 REMARK 500 4 ASP A 17 35.23 -145.75 REMARK 500 4 ASP A 34 14.47 45.80 REMARK 500 4 SER A 37 -99.99 63.44 REMARK 500 4 PHE A 38 13.32 44.59 REMARK 500 4 ASP A 91 -86.87 -25.68 REMARK 500 4 ASP A 92 41.03 -169.67 REMARK 500 4 LEU A 93 71.50 55.56 REMARK 500 4 HIS A 97 29.23 -168.60 REMARK 500 5 THR A 5 -81.04 -67.29 REMARK 500 5 GLU A 16 163.93 93.84 REMARK 500 5 ASP A 17 -4.97 70.59 REMARK 500 5 SER A 37 -66.18 -169.44 REMARK 500 5 PHE A 38 179.29 -54.48 REMARK 500 5 LYS A 39 64.83 66.49 REMARK 500 5 SER A 40 111.31 92.78 REMARK 500 5 ILE A 77 -41.98 -131.92 REMARK 500 5 ASP A 92 10.00 -156.02 REMARK 500 5 GLU A 94 76.19 -63.81 REMARK 500 5 HIS A 97 82.15 54.28 REMARK 500 5 HIS A 99 162.83 56.99 REMARK 500 6 ASP A 7 79.91 -169.41 REMARK 500 6 LYS A 15 -116.60 -54.43 REMARK 500 6 GLU A 16 -70.13 -162.32 REMARK 500 6 ASP A 34 19.99 50.19 REMARK 500 6 SER A 37 112.44 81.52 REMARK 500 6 PHE A 38 -152.99 -86.95 REMARK 500 6 SER A 40 117.07 -27.28 REMARK 500 6 ILE A 77 -55.92 -128.89 REMARK 500 6 HIS A 96 115.14 57.11 REMARK 500 6 HIS A 97 87.52 53.30 REMARK 500 7 VAL A 2 74.44 55.42 REMARK 500 7 TYR A 6 104.20 55.40 REMARK 500 7 ASP A 7 111.25 -169.40 REMARK 500 7 ASP A 34 17.29 42.73 REMARK 500 7 PHE A 38 -174.63 -172.59 REMARK 500 7 LYS A 39 -68.76 -141.75 REMARK 500 7 SER A 50 -142.68 -96.74 REMARK 500 7 LYS A 51 -169.84 48.20 REMARK 500 7 ASP A 55 -174.13 -62.00 REMARK 500 7 ASP A 91 32.98 -163.19 REMARK 500 7 ASP A 92 164.40 58.09 REMARK 500 7 LEU A 93 4.18 57.77 REMARK 500 7 HIS A 96 -71.10 -70.18 REMARK 500 7 HIS A 98 52.66 -162.27 REMARK 500 8 THR A 5 -50.54 -152.27 REMARK 500 8 ASP A 7 -33.41 -135.48 REMARK 500 8 GLU A 16 46.36 -98.83 REMARK 500 8 ASP A 17 35.15 -158.36 REMARK 500 8 ASP A 34 22.05 47.79 REMARK 500 8 SER A 37 -93.60 -97.92 REMARK 500 8 PHE A 38 139.95 59.20 REMARK 500 8 SER A 40 156.07 176.52 REMARK 500 8 ASP A 91 -27.16 88.56 REMARK 500 8 ASP A 92 176.21 -54.45 REMARK 500 8 HIS A 97 9.95 -161.00 REMARK 500 8 HIS A 98 89.39 53.69 REMARK 500 8 HIS A 99 -179.50 54.33 REMARK 500 9 VAL A 2 -27.97 -168.47 REMARK 500 9 VAL A 4 83.58 55.16 REMARK 500 9 TYR A 6 -92.58 -119.19 REMARK 500 9 ASP A 7 -99.24 -177.03 REMARK 500 9 GLU A 16 -179.24 -44.77 REMARK 500 9 ASP A 34 25.85 46.46 REMARK 500 9 SER A 37 -117.61 -61.19 REMARK 500 9 PHE A 38 171.55 56.88 REMARK 500 9 LYS A 39 -69.43 -153.60 REMARK 500 9 SER A 40 137.74 -30.47 REMARK 500 9 ILE A 77 -30.12 -144.92 REMARK 500 9 ILE A 85 -30.05 66.07 REMARK 500 9 GLU A 94 25.64 -154.41 REMARK 500 9 HIS A 96 -170.95 54.35 REMARK 500 9 HIS A 98 -68.98 -166.53 REMARK 500 9 HIS A 99 86.14 53.15 REMARK 500 10 VAL A 2 100.91 54.89 REMARK 500 10 TYR A 6 -91.43 -76.06 REMARK 500 10 ASP A 7 -111.56 -137.79 REMARK 500 10 ASP A 17 27.18 -163.45 REMARK 500 10 ASP A 34 17.59 46.06 REMARK 500 10 SER A 37 102.82 61.47 REMARK 500 10 PHE A 38 -17.55 -174.56 REMARK 500 10 LYS A 79 -18.80 -49.41 REMARK 500 10 LEU A 93 29.87 44.26 REMARK 500 10 GLU A 94 -122.14 53.87 REMARK 500 10 HIS A 96 80.36 53.51 REMARK 500 10 HIS A 99 95.10 56.27 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: LKR136B RELATED DB: TARGETDB REMARK 900 RELATED ID: 16325 RELATED DB: BMRB
DBREF 2KJK A 2 92 UNP Q929W6 Q929W6_LISIN 124 214
SEQADV 2KJK MET A 1 UNP Q929W6 INITIATING METHIONINE SEQADV 2KJK LEU A 93 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK GLU A 94 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 95 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 96 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 97 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 98 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 99 UNP Q929W6 EXPRESSION TAG SEQADV 2KJK HIS A 100 UNP Q929W6 EXPRESSION TAG
SEQRES 1 A 100 MET VAL LYS VAL THR TYR ASP GLY VAL TYR VAL LEU SER SEQRES 2 A 100 VAL LYS GLU ASP VAL PRO ALA ALA GLY ILE LEU HIS ALA SEQRES 3 A 100 GLY ASP LEU ILE THR GLU ILE ASP GLY GLN SER PHE LYS SEQRES 4 A 100 SER SER GLN GLU PHE ILE ASP TYR ILE HIS SER LYS LYS SEQRES 5 A 100 VAL GLY ASP THR VAL LYS ILE LYS TYR LYS HIS GLY ASN SEQRES 6 A 100 LYS ASN GLU GLU ALA SER ILE LYS LEU THR ALA ILE ASP SEQRES 7 A 100 LYS LYS GLY THR PRO GLY ILE GLY ILE THR LEU VAL ASP SEQRES 8 A 100 ASP LEU GLU HIS HIS HIS HIS HIS HIS
HELIX 1 1 SER A 40 LYS A 51 1 12
SHEET 1 A 5 LYS A 66 LYS A 73 0 SHEET 2 A 5 THR A 56 HIS A 63 -1 N ILE A 59 O ALA A 70 SHEET 3 A 5 LEU A 29 ILE A 33 -1 N GLU A 32 O LYS A 60 SHEET 4 A 5 VAL A 9 VAL A 14 -1 N VAL A 9 O ILE A 30 SHEET 5 A 5 ILE A 87 LEU A 89 -1 O THR A 88 N LEU A 12
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000