10 20 30 40 50 60 70 80 2KJB - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION REGULATOR 27-MAY-09 2KJB
TITLE SOLUTION STRUCTURE OF CZRA IN THE DNA BOUND STATE
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CZRA PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: REPRESSOR PROTEIN; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 GENE: RZCA, CZRA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET3D
KEYWDS CZRA, DNA-BINDING, TRANSCRIPTION, TRANSCRIPTION REGULATION, KEYWDS 2 TRANSCRIPTION REGULATOR
EXPDTA SOLUTION NMR
NUMMDL 21
AUTHOR A.I.ARUNKUMAR,G.C.CAMPANELLO,D.P.GIEDROC
REVDAT 1 10-NOV-09 2KJB 0
JRNL AUTH A.I.ARUNKUMAR,G.C.CAMPANELLO,D.P.GIEDROC JRNL TITL SOLUTION STRUCTURE OF A PARADIGM ARSR FAMILY ZINC JRNL TITL 2 SENSOR IN THE DNA-BOUND STATE JRNL REF PROC.NATL.ACAD.SCI.USA V. 106 18177 2009 JRNL REFN ISSN 0027-8424 JRNL PMID 19822742 JRNL DOI 10.1073/PNAS.0905558106
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR-NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KJB COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-09. REMARK 100 THE RCSB ID CODE IS RCSB101190.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM 28 BP DUPLEX DNA, 10 REMARK 210 MM [U-99% 2H] MES, 0.1 MM REMARK 210 SODIUM CHLORIDE, 0.04 % DSS, REMARK 210 15 MG/ML PF1 PHAGE, 1 MM [U- REMARK 210 100% 2H,13C,15N] CZRA, 93% REMARK 210 H2O/7% D2O; 1.8 MM 28 BP REMARK 210 DUPLEX DNA, 10 MM [U-99% 2H] REMARK 210 MES, 0.1 MM SODIUM CHLORIDE, REMARK 210 0.04 % DSS, 1.5 MM U-[2H,13C, REMARK 210 15N] ILED1-[CH3] LEU, VAL- REMARK 210 [CH3/CH3] CZRA-11, 93% H2O/7% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 13C/13C REMARK 210 EDITED METHYL NOESY; 1H-15N REMARK 210 TROSY-NOESY; 2D IPAP-HSQC; 3D REMARK 210 HNCO REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 21 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-21 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 3 REMARK 465 GLN A 4 REMARK 465 TYR A 5 REMARK 465 SER A 6 REMARK 465 GLU A 7 REMARK 465 ILE A 8 REMARK 465 SER A 104 REMARK 465 GLY A 105 REMARK 465 LEU A 106 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 3 REMARK 465 GLN B 4 REMARK 465 TYR B 5 REMARK 465 SER B 6 REMARK 465 GLU B 7 REMARK 465 ILE B 8 REMARK 465 SER B 104 REMARK 465 GLY B 105 REMARK 465 LEU B 106
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 15 HD22 ASN B 99 0.76 REMARK 500 O HIS A 100 H LYS A 102 1.08 REMARK 500 O ASN A 99 HD3 PRO A 101 1.21 REMARK 500 NH2 ARG A 15 HD22 ASN B 99 1.21 REMARK 500 HD1 HIS A 58 HZ1 LYS A 61 1.27 REMARK 500 H TYR A 26 HH21 ARG A 28 1.27 REMARK 500 HZ2 LYS A 92 HE2 HIS A 96 1.27 REMARK 500 H ASP A 25 HH21 ARG A 28 1.27 REMARK 500 H ASP A 25 HE ARG A 28 1.28 REMARK 500 HG SER B 46 HE21 GLN B 53 1.28 REMARK 500 HE3 LYS A 64 HB1 ALA A 71 1.30 REMARK 500 HZ3 LYS B 70 H ASP B 83 1.32 REMARK 500 HA GLN A 53 HG21 VAL A 56 1.34 REMARK 500 HZ3 LYS A 64 H ALA A 71 1.36 REMARK 500 HG1 THR B 10 HG1 THR B 12 1.39 REMARK 500 HE ARG A 28 HD11 LEU A 63 1.39 REMARK 500 O HIS A 97 H ASN A 99 1.39 REMARK 500 HH21 ARG A 15 ND2 ASN B 99 1.42 REMARK 500 HD2 TYR A 26 HG23 THR B 17 1.42 REMARK 500 HH22 ARG A 15 HD22 ASN B 99 1.47 REMARK 500 HD22 ASN A 27 HE21 GLN A 59 1.51 REMARK 500 O GLY A 43 H SER A 46 1.52 REMARK 500 HG SER B 52 H SER B 54 1.54 REMARK 500 HG SER B 52 H SER B 54 1.57 REMARK 500 HA2 GLY B 43 HG SER B 46 1.57 REMARK 500 O ARG B 15 H GLU B 18 1.57 REMARK 500 O GLN B 48 H ASN B 50 1.58 REMARK 500 O LEU B 62 H SER B 65 1.58 REMARK 500 HG SER B 41 H HIS B 44 1.59 REMARK 500 O HIS A 100 N LYS A 102 2.01 REMARK 500 O GLY A 43 N SER A 46 2.16 REMARK 500 NH2 ARG A 15 ND2 ASN B 99 2.16 REMARK 500 O GLY B 43 OG SER B 46 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 14 -33.40 -39.45 REMARK 500 1 LEU A 23 158.81 -49.75 REMARK 500 1 ASN A 27 -21.35 -37.65 REMARK 500 1 VAL A 37 -67.44 -135.26 REMARK 500 1 HIS A 44 -54.44 -21.77 REMARK 500 1 HIS A 47 -71.86 -62.69 REMARK 500 1 LEU A 49 32.36 -78.52 REMARK 500 1 ASN A 50 77.86 26.13 REMARK 500 1 VAL A 56 -81.33 -39.10 REMARK 500 1 SER A 57 -36.08 -36.04 REMARK 500 1 GLN A 59 -75.03 -64.78 REMARK 500 1 LEU A 62 -83.25 -52.70 REMARK 500 1 LEU A 63 -60.49 -26.87 REMARK 500 1 HIS A 67 3.90 88.45 REMARK 500 1 GLN A 74 98.50 -164.43 REMARK 500 1 GLN A 76 -93.33 -140.23 REMARK 500 1 SER A 81 142.66 177.62 REMARK 500 1 ALA A 98 26.75 -57.01 REMARK 500 1 PRO A 101 44.01 -47.08 REMARK 500 1 LYS A 102 -171.80 78.25 REMARK 500 1 THR B 10 -157.39 175.20 REMARK 500 1 ASN B 27 -28.99 -38.78 REMARK 500 1 SER B 38 178.53 144.84 REMARK 500 1 GLU B 39 119.68 -170.63 REMARK 500 1 LEU B 49 18.71 -56.81 REMARK 500 1 VAL B 56 -78.67 -28.49 REMARK 500 1 GLN B 59 -84.72 -48.07 REMARK 500 1 LEU B 60 -55.99 -20.47 REMARK 500 1 LYS B 61 -78.48 -35.37 REMARK 500 1 LEU B 62 -84.79 -35.32 REMARK 500 1 LEU B 63 -58.95 -27.87 REMARK 500 1 HIS B 67 6.56 84.79 REMARK 500 1 GLN B 76 -82.28 -149.67 REMARK 500 1 SER B 81 144.27 153.39 REMARK 500 1 ALA B 98 -56.61 -23.19 REMARK 500 1 HIS B 100 -165.94 -32.06 REMARK 500 1 PRO B 101 -84.40 -74.13 REMARK 500 1 LYS B 102 -34.02 -158.63 REMARK 500 2 THR A 10 -28.96 -146.47 REMARK 500 2 ASP A 25 165.56 59.51 REMARK 500 2 ASN A 27 3.50 -62.83 REMARK 500 2 VAL A 37 71.69 -150.99 REMARK 500 2 SER A 46 -76.25 -67.78 REMARK 500 2 ASN A 50 62.72 60.98 REMARK 500 2 LEU A 62 -72.20 -52.17 REMARK 500 2 SER A 77 -167.73 -69.41 REMARK 500 2 LEU A 82 -157.57 -74.28 REMARK 500 2 ASP A 83 -66.32 -160.67 REMARK 500 2 ASP A 84 99.20 -69.61 REMARK 500 2 ALA A 98 -91.56 -51.04 REMARK 500 REMARK 500 THIS ENTRY HAS 604 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 7376 RELATED DB: BMRB REMARK 900 ZN(II) BOUND CZRA REMARK 900 RELATED ID: 7377 RELATED DB: BMRB REMARK 900 DNA BOUND CZRA REMARK 900 RELATED ID: 15177 RELATED DB: BMRB REMARK 900 APO CZRA REMARK 900 RELATED ID: 2KJC RELATED DB: PDB
DBREF 2KJB A 1 106 UNP O85142 O85142_STAAU 1 106 DBREF 2KJB B 1 106 UNP O85142 O85142_STAAU 1 106
SEQADV 2KJB ALA A 2 UNP O85142 SER 2 ENGINEERED SEQADV 2KJB ALA B 2 UNP O85142 SER 2 ENGINEERED
SEQRES 1 A 106 MET ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU SEQRES 2 A 106 GLU ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR SEQRES 3 A 106 ASN ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU SEQRES 4 A 106 ALA SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER SEQRES 5 A 106 GLN SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER SEQRES 6 A 106 VAL HIS LEU VAL LYS ALA LYS ARG GLN GLY GLN SER MET SEQRES 7 A 106 ILE TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU SEQRES 8 A 106 LYS GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER SEQRES 9 A 106 GLY LEU SEQRES 1 B 106 MET ALA GLU GLN TYR SER GLU ILE ASN THR ASP THR LEU SEQRES 2 B 106 GLU ARG VAL THR GLU ILE PHE LYS ALA LEU GLY ASP TYR SEQRES 3 B 106 ASN ARG ILE ARG ILE MET GLU LEU LEU SER VAL SER GLU SEQRES 4 B 106 ALA SER VAL GLY HIS ILE SER HIS GLN LEU ASN LEU SER SEQRES 5 B 106 GLN SER ASN VAL SER HIS GLN LEU LYS LEU LEU LYS SER SEQRES 6 B 106 VAL HIS LEU VAL LYS ALA LYS ARG GLN GLY GLN SER MET SEQRES 7 B 106 ILE TYR SER LEU ASP ASP ILE HIS VAL ALA THR MET LEU SEQRES 8 B 106 LYS GLN ALA ILE HIS HIS ALA ASN HIS PRO LYS GLU SER SEQRES 9 B 106 GLY LEU
HELIX 1 1 THR A 12 LEU A 23 1 12 HELIX 2 2 TYR A 26 SER A 36 1 11 HELIX 3 3 SER A 41 LEU A 49 1 9 HELIX 4 4 SER A 52 VAL A 66 1 15 HELIX 5 5 ASP A 84 ALA A 98 1 15 HELIX 6 6 ASP B 11 LEU B 23 1 13 HELIX 7 7 TYR B 26 VAL B 37 1 12 HELIX 8 8 SER B 41 LEU B 49 1 9 HELIX 9 9 SER B 52 VAL B 66 1 15 HELIX 10 10 ASP B 84 ALA B 98 1 15
SHEET 1 A 2 LYS B 70 ARG B 73 0 SHEET 2 A 2 MET B 78 SER B 81 -1 O ILE B 79 N LYS B 72
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000