10 20 30 40 50 60 70 80 2KJ8 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 25-MAY-09 2KJ8
TITLE NMR STRUCTURE OF FRAGMENT 87-196 FROM THE PUTATIVE PHAGE TITLE 2 INTEGRASE INTS OF E. COLI: NORTHEAST STRUCTURAL GENOMICS TITLE 3 CONSORTIUM TARGET ER652A, PSI-2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE PROPHAGE CPS-53 INTEGRASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 87-196; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: B2349, INTC, INTS, JW2345, YFDB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET21-23C
KEYWDS INTEGRASE, INTS, INTC, YFDB, CPS-53, DNA INTEGRATION, DNA KEYWDS 2 RECOMBINATION, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, NESG, UNKNOWN FUNCTION, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR J.R.CORT,T.A.RAMELOT,D.WANG,C.CICCOSANTI,H.JANJUA,R.NAIR, AUTHOR 2 B.ROST,G.SWAPNA,R.XIAO,J.K.EVERETT,G.T.MONTELIONE, AUTHOR 3 M.A.KENNEDY,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 07-JUL-09 2KJ8 0
JRNL AUTH J.R.CORT,G.T.MONTELIONE,M.A.KENNEDY JRNL TITL NMR STRUCTURE OF FRAGMENT 87-196 FROM THE PUTATIVE JRNL TITL 2 PHAGE INTEGRASE INTS OF E. COLI JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH, CNS REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE (X- REMARK 3 PLOR_NIH), BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FINAL REFINEMENT WITH LJ AND REMARK 3 ELECTROSTATIC POTENTIAL CONDUCTED IN EXPLICIT WATER
REMARK 4 REMARK 4 2KJ8 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB101187.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 215 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 95 % H2O, 5 % [U-2H] D2O, 20 REMARK 210 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 W/V REMARK 210 SODIUM AZIDE, 0.95 MM REMARK 210 [BIOSYNTHETICALLY DIRECTED 5% REMARK 210 C; U-99% 15N] PROTEIN, 95% REMARK 210 H2O/5% D2O; 100 % [U-2H] D2O, REMARK 210 20 MM MES, 200 MM SODIUM REMARK 210 CHLORIDE, 5 MM CALCIUM REMARK 210 CHLORIDE, 10 MM DTT, 0.02 W/V REMARK 210 SODIUM AZIDE, 1.2 MM [U-99% REMARK 210 13C; U-99% 15N] PROTEIN, 100% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-13C REMARK 210 NOESY; 3D HCCH-COSY; 3D HNCO; REMARK 210 3D HNCA; 3D HNCACB; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HNHA; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 4D 1H- REMARK 210 13C-13C-1H HMQC-NOESY-HMQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, AUTOSTRUCTURE, FELIX REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOW RESTRAINT VIOLATIONS AND REMARK 210 ENERGIES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 41 -60.49 -98.75 REMARK 500 1 PRO A 95 32.73 -75.60 REMARK 500 2 PRO A 95 34.09 -76.52 REMARK 500 2 HIS A 116 0.54 -165.35 REMARK 500 3 ILE A 41 -67.75 -98.99 REMARK 500 3 LYS A 92 -64.84 -136.23 REMARK 500 3 PRO A 95 28.53 -77.78 REMARK 500 3 LYS A 109 82.18 58.80 REMARK 500 4 ILE A 41 -60.75 -100.25 REMARK 500 4 LYS A 92 -45.62 -136.17 REMARK 500 4 PRO A 95 36.63 -74.92 REMARK 500 4 LYS A 109 70.49 54.97 REMARK 500 4 LEU A 111 -68.91 69.79 REMARK 500 4 HIS A 115 70.20 -106.98 REMARK 500 5 LYS A 92 -64.80 -109.54 REMARK 500 5 PRO A 95 29.08 -73.89 REMARK 500 6 ILE A 41 -61.33 -91.07 REMARK 500 6 PRO A 95 32.99 -75.88 REMARK 500 6 LYS A 109 77.99 64.86 REMARK 500 7 HIS A 114 66.22 64.38 REMARK 500 8 ASN A 3 89.84 63.73 REMARK 500 8 ILE A 41 -66.49 -97.36 REMARK 500 8 PRO A 95 33.47 -76.62 REMARK 500 8 TYR A 106 -72.21 -50.07 REMARK 500 8 GLU A 112 -91.05 64.57 REMARK 500 9 ASP A 35 -72.56 -58.22 REMARK 500 9 ILE A 41 -65.14 -95.07 REMARK 500 9 PRO A 95 26.36 -75.94 REMARK 500 9 HIS A 115 -74.11 -103.85 REMARK 500 9 HIS A 116 -57.00 -174.40 REMARK 500 10 LYS A 109 -48.77 73.52 REMARK 500 10 HIS A 116 83.47 62.58 REMARK 500 11 ASN A 3 85.70 61.12 REMARK 500 11 PRO A 40 4.36 -68.44 REMARK 500 12 ASN A 4 92.13 70.17 REMARK 500 12 ILE A 41 -67.25 -90.71 REMARK 500 12 ARG A 90 -64.45 -91.70 REMARK 500 12 PRO A 95 29.36 -76.08 REMARK 500 12 LYS A 108 84.54 58.05 REMARK 500 13 SER A 2 -149.04 -96.67 REMARK 500 13 ASN A 3 90.98 -69.52 REMARK 500 15 ASN A 3 84.57 65.92 REMARK 500 15 PRO A 95 39.62 -75.00 REMARK 500 15 HIS A 116 -73.41 69.91 REMARK 500 15 HIS A 117 -162.09 -125.92 REMARK 500 16 PRO A 95 43.80 -70.80 REMARK 500 17 PRO A 95 26.59 -69.11 REMARK 500 18 ILE A 41 -64.67 -97.13 REMARK 500 18 PRO A 95 34.28 -76.70 REMARK 500 18 HIS A 117 -74.75 -103.91 REMARK 500 19 PRO A 95 36.90 -76.99 REMARK 500 19 HIS A 116 -68.28 -98.55 REMARK 500 19 HIS A 117 -30.38 171.87 REMARK 500 20 ILE A 41 -63.03 -102.34 REMARK 500 20 PRO A 95 36.02 -71.90 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: ER652A RELATED DB: TARGETDB
DBREF 2KJ8 A 1 110 UNP P37326 INTS_ECOLI 87 196
SEQADV 2KJ8 LEU A 111 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 GLU A 112 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 113 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 114 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 115 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 116 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 117 UNP P37326 EXPRESSION TAG SEQADV 2KJ8 HIS A 118 UNP P37326 EXPRESSION TAG
SEQRES 1 A 118 SER SER ASN ASN ASN SER PHE SER ALA ILE TYR LYS GLU SEQRES 2 A 118 TRP TYR GLU HIS LYS LYS GLN VAL TRP SER VAL GLY TYR SEQRES 3 A 118 ALA THR GLU LEU ALA LYS MET PHE ASP ASP ASP ILE LEU SEQRES 4 A 118 PRO ILE ILE GLY GLY LEU GLU ILE GLN ASP ILE GLU PRO SEQRES 5 A 118 MET GLN LEU LEU GLU VAL ILE ARG ARG PHE GLU ASP ARG SEQRES 6 A 118 GLY ALA MET GLU ARG ALA ASN LYS ALA ARG ARG ARG CYS SEQRES 7 A 118 GLY GLU VAL PHE ARG TYR ALA ILE VAL THR GLY ARG ALA SEQRES 8 A 118 LYS TYR ASN PRO ALA PRO ASP LEU ALA ASP ALA MET LYS SEQRES 9 A 118 GLY TYR ARG LYS LYS ASN LEU GLU HIS HIS HIS HIS HIS SEQRES 10 A 118 HIS
HELIX 1 1 SER A 6 LYS A 19 1 14 HELIX 2 2 SER A 23 GLY A 43 1 21 HELIX 3 3 GLU A 51 ASP A 64 1 14 HELIX 4 4 ALA A 67 THR A 88 1 22 HELIX 5 5 PRO A 95 TYR A 106 1 12 HELIX 6 6 ARG A 107 LYS A 109 5 3
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000