10 20 30 40 50 60 70 80 2KJ6 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE 22-MAY-09 2KJ6
TITLE NMR SOLUTION STRUCTURE OF A TUBULIN FOLDING COFACTOR B TITLE 2 OBTAINED FROM ARABIDOPSIS THALIANA: NORTHEAST STRUCTURAL TITLE 3 GENOMICS CONSORTIUM TARGET AR3436A
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TUBULIN FOLDING COFACTOR B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 10-96; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE-CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT3G10220; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET 21-23C
KEYWDS METHODS DEVELOPMENT, NESG, AR3436A, ARABIDOPSIS THALIANA, KEYWDS 2 TUBULIN FOLDING COFACTOR B, SOLUTION NMR, PSI-2, STRUCTURAL KEYWDS 3 GENOMICS, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 4 STRUCTURAL GENOMICS CONSORTIUM, CHAPERONE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR R.MANI,G.V.T.SWAPNA,R.SHASTRY,E.FOOTE,C.CICCOSANTI,M.JIANG, AUTHOR 2 R.XIAO,R.NAIR,J.EVERETT,Y.J.HUANG,T.ACTON,B.ROST, AUTHOR 3 G.T.MONTELIONE,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM AUTHOR 4 (NESG)
REVDAT 2 04-AUG-09 2KJ6 1 AUTHOR JRNL REVDAT 1 21-JUL-09 2KJ6 0
JRNL AUTH R.MANI,G.V.T.SWAPNA,R.SHASTRY,E.FOOTE,C.CICCOSANTI, JRNL AUTH 2 M.JIANG,R.XIAO,R.NAIR,J.EVERETT,Y.J.HUANG,T.ACTON, JRNL AUTH 3 B.ROST,G.T.MONTELIONE JRNL TITL NMR SOLUTION STRUCTURE OF TBULIN FOLDING COFACTOR B JRNL TITL 2 OBTAINED FROM ARABIDOPSIS THALIANA: NORTHEAST JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 2.0.6 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS OBTAINED USING REMARK 3 TRIPLE RESONANCE NMR SPECTROSCOPY. GFT-NMR EXPERIMENTS WERE REMARK 3 USED FOR BACKBONE ASSIGNMENTS. AUTOMATED NOESY ASSIGNMENTS REMARK 3 WERE MADE USING AUTOSTRUCTURE AND CYANA-2.1. DIHEDRAL ANGLE REMARK 3 CONSTRAINTS WERE OBTAINED FROM TALOS. THE ASSIGNMENTS WERE REMARK 3 VALIDATED USING AVS SOFTWARE. FINAL STRUCTURE FACTORS REMARK 3 DETERMINED USING PSVS: ORDERED RESIDUES: 29-33, 15-21, 89-94, REMARK 3 57-62, 39-50, 79-82. RAMACHANDRAN STATISTICS FOR ORDERED REMARK 3 RESIDUES: MOST FAVORED REGION: 84.4%, ADDITIONALLY FAVORED REMARK 3 REGION: 15.6%, GENEROUSLY ALOOWED: 0.1%. PROCHECK SCORES FOR REMARK 3 ORDERED RESIDUES (RAW/Z): PHI/PSI -0.51/-1.69, ALL -0.33/- REMARK 3 1.95, MOLPROBITY CLASH SCORES (RAW/Z) - 15.41/-1.12. RPF REMARK 3 SCORES FOR THE GOODNESS FIT TO NOESY DATA: RECALL-0.993, REMARK 3 PRECISION-0.878, F-MEASURE-0.932, FINAL DP SCORE-0.756.
REMARK 4 REMARK 4 2KJ6 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB101185.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 5MM CACL2, 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.78 MM [U-100% 13C; U-100% REMARK 210 15N] AR3436A, 90% H2O/10% D2O; REMARK 210 0.95 MM [U-100% 13C; U-100% REMARK 210 15N] AR3436A, 90% H2O/10% D2O; REMARK 210 0.4 MM [U-100% 13C; U-100% REMARK 210 15N] AR3436A, 90% H2O/10% D2O; REMARK 210 0.56 MM [U-10% 13C; U-100% REMARK 210 15N] AR3436A, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H- REMARK 210 13CALIPHATIC NOESY; 3D 1H-13C REMARK 210 AROMATIC NOESY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C HSQC; 3D REMARK 210 HBHA(CO)NH; 3D CBCA(CO)NH; (4, REMARK 210 3)D GFT-HNNCABCA; (4,3)D GFT- REMARK 210 CABCA(CO)NHN; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HNHA; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AUTOSTRUCTURE 2.2.1, CYANA REMARK 210 2.1, AUTOASSIGN 2.4.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 140 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 16 76.92 -103.68 REMARK 500 1 VAL A 54 42.50 -89.89 REMARK 500 1 ASP A 63 -164.57 -104.24 REMARK 500 1 LEU A 72 -4.34 73.01 REMARK 500 2 HIS A 3 70.54 58.00 REMARK 500 2 ASP A 13 98.73 -165.07 REMARK 500 2 CYS A 50 -37.21 -160.29 REMARK 500 2 SER A 53 160.21 72.68 REMARK 500 2 ASP A 74 19.35 -146.30 REMARK 500 2 SER A 83 88.18 57.82 REMARK 500 2 PHE A 85 -53.96 -144.01 REMARK 500 2 ASP A 86 159.30 69.50 REMARK 500 3 HIS A 4 50.35 -141.75 REMARK 500 3 HIS A 8 -72.14 -122.69 REMARK 500 3 SER A 9 -156.40 51.81 REMARK 500 3 SER A 14 165.81 62.13 REMARK 500 3 PRO A 35 3.54 -68.56 REMARK 500 3 SER A 67 -70.82 -152.67 REMARK 500 3 SER A 83 90.52 70.45 REMARK 500 3 LEU A 95 -71.30 -82.73 REMARK 500 4 HIS A 6 97.73 -68.08 REMARK 500 4 HIS A 8 -91.85 -105.43 REMARK 500 4 SER A 9 -173.34 59.88 REMARK 500 4 ALA A 29 30.23 -149.37 REMARK 500 4 SER A 67 -60.43 -158.79 REMARK 500 4 SER A 83 87.27 72.43 REMARK 500 4 LEU A 95 -80.11 -120.08 REMARK 500 5 HIS A 8 -78.81 -81.16 REMARK 500 5 SER A 9 163.73 72.73 REMARK 500 5 ASP A 13 29.40 -156.27 REMARK 500 5 ASP A 63 -168.89 -118.11 REMARK 500 5 SER A 67 -68.79 -157.63 REMARK 500 5 SER A 83 85.46 65.38 REMARK 500 5 LEU A 95 -161.98 -105.17 REMARK 500 6 HIS A 3 89.19 67.95 REMARK 500 6 HIS A 4 103.35 -58.26 REMARK 500 6 PRO A 35 20.89 -71.53 REMARK 500 6 ASP A 64 -24.75 89.19 REMARK 500 6 LEU A 72 81.37 55.37 REMARK 500 6 SER A 83 89.72 63.33 REMARK 500 6 ASP A 86 88.06 68.35 REMARK 500 7 HIS A 3 89.54 63.02 REMARK 500 7 HIS A 6 33.25 -152.75 REMARK 500 7 ASP A 13 44.44 -74.44 REMARK 500 7 ASP A 64 -2.06 81.28 REMARK 500 7 SER A 83 88.82 62.01 REMARK 500 7 ASP A 86 132.61 72.48 REMARK 500 8 SER A 9 -160.98 60.95 REMARK 500 8 LEU A 17 -154.12 -116.57 REMARK 500 8 HIS A 18 95.88 -176.60 REMARK 500 8 SER A 67 -81.45 -152.02 REMARK 500 8 VAL A 71 -71.00 -94.41 REMARK 500 8 SER A 83 83.45 65.58 REMARK 500 8 ASP A 94 99.63 -67.33 REMARK 500 8 LEU A 95 -163.69 -100.87 REMARK 500 9 HIS A 6 108.89 -173.87 REMARK 500 9 SER A 9 92.03 -63.93 REMARK 500 9 HIS A 10 27.14 -153.84 REMARK 500 9 PHE A 82 -63.87 -104.25 REMARK 500 9 SER A 83 105.11 -175.26 REMARK 500 9 ASP A 86 -56.88 178.46 REMARK 500 10 HIS A 5 70.62 -154.81 REMARK 500 10 SER A 9 115.83 63.95 REMARK 500 10 ALA A 29 32.20 -149.92 REMARK 500 10 ASP A 64 55.14 -94.11 REMARK 500 10 SER A 65 -54.90 -161.25 REMARK 500 10 SER A 67 -75.25 -164.28 REMARK 500 10 SER A 83 91.17 66.13 REMARK 500 10 LEU A 95 -168.07 -103.51 REMARK 500 11 ASP A 13 130.29 -177.65 REMARK 500 11 ALA A 29 109.60 -164.17 REMARK 500 11 ASP A 64 -64.35 72.01 REMARK 500 11 SER A 65 -51.67 -161.76 REMARK 500 11 SER A 73 22.28 -164.88 REMARK 500 11 SER A 83 95.37 66.90 REMARK 500 11 ASP A 86 -56.77 -166.31 REMARK 500 12 HIS A 10 19.55 -147.76 REMARK 500 12 ASP A 12 65.05 -150.75 REMARK 500 12 ASP A 13 128.17 -172.57 REMARK 500 12 SER A 14 114.93 173.58 REMARK 500 12 ASN A 55 32.06 -80.39 REMARK 500 12 SER A 56 19.94 -147.61 REMARK 500 12 SER A 67 -62.08 -165.95 REMARK 500 12 ALA A 70 107.59 -176.64 REMARK 500 12 SER A 83 80.32 63.94 REMARK 500 12 LEU A 95 -157.31 -101.87 REMARK 500 13 HIS A 3 -160.01 63.25 REMARK 500 13 HIS A 7 103.09 65.49 REMARK 500 13 SER A 9 -165.10 61.92 REMARK 500 13 HIS A 10 34.95 -143.68 REMARK 500 13 ASP A 13 -179.93 -171.29 REMARK 500 13 SER A 14 -172.18 61.52 REMARK 500 13 CYS A 50 -24.76 -170.08 REMARK 500 13 VAL A 54 88.86 -68.82 REMARK 500 13 ASN A 55 -58.88 178.36 REMARK 500 13 ASP A 64 -65.69 70.55 REMARK 500 13 SER A 67 103.06 62.92 REMARK 500 13 LEU A 72 80.94 56.14 REMARK 500 13 SER A 73 -36.17 -138.42 REMARK 500 13 PHE A 82 -74.47 -78.04 REMARK 500 14 GLN A 36 74.90 -176.29 REMARK 500 14 ASN A 55 -32.47 -139.64 REMARK 500 14 ASP A 64 -63.73 70.08 REMARK 500 14 SER A 65 -65.57 -164.79 REMARK 500 14 ASP A 74 52.29 -96.06 REMARK 500 14 SER A 83 90.78 64.79 REMARK 500 14 ASP A 86 -68.63 -174.07 REMARK 500 15 ASP A 64 -34.86 161.22 REMARK 500 15 LEU A 72 72.75 54.02 REMARK 500 15 SER A 83 71.00 64.19 REMARK 500 16 HIS A 6 41.38 -158.45 REMARK 500 16 HIS A 8 86.96 -162.57 REMARK 500 16 ALA A 22 -71.08 -73.52 REMARK 500 16 SER A 53 145.26 71.87 REMARK 500 16 MET A 57 39.88 -141.19 REMARK 500 16 SER A 65 -41.09 78.06 REMARK 500 16 LEU A 72 71.62 59.09 REMARK 500 16 ASP A 74 23.59 -148.49 REMARK 500 16 SER A 83 111.09 69.71 REMARK 500 17 HIS A 6 -173.89 68.19 REMARK 500 17 HIS A 8 -161.96 -127.22 REMARK 500 17 SER A 9 119.96 82.40 REMARK 500 17 CYS A 50 -59.78 -151.04 REMARK 500 17 VAL A 54 80.49 64.60 REMARK 500 17 ASN A 55 -75.11 -108.13 REMARK 500 17 ASP A 63 48.88 -88.31 REMARK 500 17 ASP A 64 65.56 69.92 REMARK 500 17 VAL A 69 41.85 -84.89 REMARK 500 18 SER A 9 109.65 -59.18 REMARK 500 18 GLN A 36 18.58 -160.49 REMARK 500 18 ASN A 55 -51.18 -127.74 REMARK 500 18 ASP A 64 -64.47 71.97 REMARK 500 18 SER A 65 -46.26 -179.63 REMARK 500 18 SER A 83 94.15 65.30 REMARK 500 19 HIS A 10 -82.87 -151.23 REMARK 500 19 ASP A 13 79.56 47.48 REMARK 500 19 SER A 14 98.63 -66.31 REMARK 500 19 LYS A 49 -73.12 -75.94 REMARK 500 19 CYS A 50 -58.12 -152.62 REMARK 500 19 PHE A 85 98.86 -175.16 REMARK 500 20 HIS A 8 -66.48 -93.71 REMARK 500 20 SER A 9 126.13 67.99 REMARK 500 20 PRO A 35 30.57 -71.89 REMARK 500 20 LYS A 49 -60.15 -100.67 REMARK 500 20 SER A 65 -54.89 -122.87 REMARK 500 20 SER A 67 -76.65 -160.70 REMARK 500 20 SER A 83 91.37 67.79 REMARK 500 20 LEU A 95 -74.48 -69.06 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: AR3436A RELATED DB: TARGETDB REMARK 900 RELATED ID: 16313 RELATED DB: BMRB
DBREF 2KJ6 A 11 97 UNP Q67Z52 Q67Z52_ARATH 10 96
SEQADV 2KJ6 MET A 1 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 GLY A 2 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 3 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 4 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 5 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 6 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 7 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 8 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 SER A 9 UNP Q67Z52 EXPRESSION TAG SEQADV 2KJ6 HIS A 10 UNP Q67Z52 EXPRESSION TAG
SEQRES 1 A 97 MET GLY HIS HIS HIS HIS HIS HIS SER HIS GLY ASP ASP SEQRES 2 A 97 SER VAL HIS LEU HIS ILE THR HIS ALA ASN LEU LYS SER SEQRES 3 A 97 PHE SER ALA ASP ALA ARG PHE SER PRO GLN MET SER VAL SEQRES 4 A 97 GLU ALA VAL LYS GLU LYS LEU TRP LYS LYS CYS GLY THR SEQRES 5 A 97 SER VAL ASN SER MET ALA LEU GLU LEU TYR ASP ASP SER SEQRES 6 A 97 GLY SER LYS VAL ALA VAL LEU SER ASP ASP SER ARG PRO SEQRES 7 A 97 LEU GLY PHE PHE SER PRO PHE ASP GLY PHE ARG LEU HIS SEQRES 8 A 97 ILE ILE ASP LEU ASP PRO
HELIX 1 1 SER A 38 GLY A 51 1 14 HELIX 2 2 SER A 73 ARG A 77 5 5 HELIX 3 3 PRO A 78 SER A 83 1 6
SHEET 1 A 4 ALA A 29 PHE A 33 0 SHEET 2 A 4 VAL A 15 HIS A 21 -1 N ILE A 19 O ALA A 29 SHEET 3 A 4 ARG A 89 ASP A 94 1 O LEU A 90 N THR A 20 SHEET 4 A 4 MET A 57 TYR A 62 -1 N TYR A 62 O ARG A 89
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000