10 20 30 40 50 60 70 80 2KIE - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER HYDROLASE 03-MAY-09 2KIE
TITLE A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN MEDIATED MEMBRANE TITLE 2 TRAFFICKING TO PHOSPHOINOSITIDE METABOLIS
COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSITOL POLYPHOSPHATE 5-PHOSPHATASE OCRL-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL RESIDUES 1-119; COMPND 5 SYNONYM: LOWE OCULOCEREBRORENAL SYNDROME PROTEIN; COMPND 6 EC: 3.1.3.36; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: OCRL, INPP5F, OCRL1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX6P-1
KEYWDS OCRL, INPP5B, PH, CLATHRIN, ENDOCYTOSIS, ALTERNATIVE KEYWDS 2 SPLICING, CATARACT, DISEASE MUTATION, HYDROLASE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR Y.MAO,D.M.BALKIN,R.ZONCU,K.ERDMANN,L.TOMASINI,F.HU,M.M.JIN, AUTHOR 2 M.E.HODSDON,P.DE CAMILLI
REVDAT 1 21-JUL-09 2KIE 0
JRNL AUTH Y.MAO,D.M.BALKIN,R.ZONCU,K.S.ERDMANN,L.TOMASINI, JRNL AUTH 2 F.HU,M.M.JIN,M.E.HODSDON,P.DE CAMILLI JRNL TITL A PH DOMAIN WITHIN OCRL BRIDGES CLATHRIN-MEDIATED JRNL TITL 2 MEMBRANE TRAFFICKING TO PHOSPHOINOSITIDE METABOLISM JRNL REF EMBO J. V. 28 1831 2009 JRNL REFN ISSN 0261-4189 JRNL PMID 19536138 JRNL DOI 10.1038/EMBOJ.2009.155
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KIE COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-09. REMARK 100 THE RCSB ID CODE IS RCSB101158.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN , 20 MM POTASSIUM REMARK 210 PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HNCA; 3D HNCACB; 3D HN(CO)CA; REMARK 210 3D CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D 1H REMARK 210 -15N NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE, SPARKY, X- REMARK 210 PLOR_NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 16 98.38 -50.96 REMARK 500 1 LEU A 29 -176.30 -174.99 REMARK 500 1 HIS A 51 40.57 -71.54 REMARK 500 1 GLU A 54 -78.98 -65.05 REMARK 500 1 ASN A 64 -160.88 -174.68 REMARK 500 1 GLU A 72 60.75 36.87 REMARK 500 1 GLU A 75 79.55 -167.42 REMARK 500 1 THR A 76 57.34 -114.63 REMARK 500 1 ASP A 80 -38.21 -144.35 REMARK 500 1 SER A 83 62.23 -103.73 REMARK 500 1 SER A 85 86.81 67.85 REMARK 500 1 GLU A 98 129.50 -174.54 REMARK 500 2 GLU A 7 105.44 -42.31 REMARK 500 2 GLN A 15 79.62 -104.78 REMARK 500 2 PRO A 16 94.74 -61.78 REMARK 500 2 LEU A 29 177.58 179.60 REMARK 500 2 GLU A 52 150.09 -45.65 REMARK 500 2 GLU A 54 -75.76 -54.55 REMARK 500 2 ASN A 64 -162.69 -175.22 REMARK 500 2 GLU A 72 58.82 37.11 REMARK 500 2 ALA A 73 -173.48 -177.99 REMARK 500 2 GLU A 75 86.76 -161.55 REMARK 500 2 THR A 76 43.67 -141.92 REMARK 500 2 ASP A 80 -36.28 -146.74 REMARK 500 2 SER A 83 66.58 -103.87 REMARK 500 2 SER A 85 98.44 65.06 REMARK 500 3 MET A 6 -136.82 45.48 REMARK 500 3 LEU A 29 -170.06 -173.94 REMARK 500 3 GLU A 54 -77.36 -64.57 REMARK 500 3 ASN A 64 -163.34 -175.66 REMARK 500 3 GLU A 72 -0.06 57.85 REMARK 500 3 GLU A 75 83.39 -161.99 REMARK 500 3 THR A 76 82.41 -154.65 REMARK 500 3 ASP A 80 -41.76 -168.45 REMARK 500 3 ALA A 82 -3.58 -56.18 REMARK 500 3 SER A 85 85.10 61.77 REMARK 500 4 PRO A 16 99.71 -59.13 REMARK 500 4 LEU A 29 -174.57 179.70 REMARK 500 4 GLU A 52 -167.72 42.39 REMARK 500 4 GLU A 54 -68.50 -138.73 REMARK 500 4 ASN A 64 -155.89 -172.94 REMARK 500 4 ALA A 73 -168.25 178.19 REMARK 500 4 GLU A 75 -105.43 -140.57 REMARK 500 4 THR A 76 35.19 36.10 REMARK 500 4 ASP A 80 -41.18 -144.25 REMARK 500 4 ALA A 82 -18.05 -45.29 REMARK 500 4 SER A 85 89.47 70.15 REMARK 500 5 LEU A 29 -179.87 -176.46 REMARK 500 5 GLU A 52 152.95 -45.49 REMARK 500 5 GLN A 55 -163.04 -173.11 REMARK 500 5 ASN A 64 -163.47 -172.96 REMARK 500 5 GLU A 72 -0.37 57.78 REMARK 500 5 GLU A 75 81.34 -168.06 REMARK 500 5 THR A 76 73.93 -151.84 REMARK 500 5 ASP A 80 -38.56 -156.22 REMARK 500 5 SER A 83 62.57 -100.46 REMARK 500 5 SER A 85 94.85 57.83 REMARK 500 6 GLN A 15 79.85 -104.22 REMARK 500 6 PRO A 16 98.97 -60.35 REMARK 500 6 LEU A 29 175.21 179.06 REMARK 500 6 GLU A 54 -81.32 -70.20 REMARK 500 6 ASN A 64 -158.90 -169.57 REMARK 500 6 GLU A 72 56.93 37.52 REMARK 500 6 GLU A 75 -92.49 -146.41 REMARK 500 6 THR A 76 24.66 42.61 REMARK 500 6 ASP A 80 -33.80 -144.57 REMARK 500 6 SER A 85 84.98 61.82 REMARK 500 7 LEU A 29 -171.97 -174.00 REMARK 500 7 HIS A 51 36.60 -80.18 REMARK 500 7 GLN A 55 149.87 -174.46 REMARK 500 7 HIS A 56 87.95 -60.58 REMARK 500 7 ASN A 64 -158.64 -170.22 REMARK 500 7 GLU A 72 -96.36 55.25 REMARK 500 7 THR A 76 46.44 -89.39 REMARK 500 7 ASP A 80 -50.15 -152.29 REMARK 500 7 ALA A 82 -16.32 -42.60 REMARK 500 7 SER A 85 89.68 76.97 REMARK 500 7 GLU A 98 128.39 -176.90 REMARK 500 8 MET A 6 -126.89 -59.34 REMARK 500 8 PRO A 16 97.95 -49.45 REMARK 500 8 LEU A 29 177.21 179.14 REMARK 500 8 ASN A 64 -165.37 -163.85 REMARK 500 8 GLU A 72 47.82 38.64 REMARK 500 8 ALA A 73 -155.94 -174.04 REMARK 500 8 GLU A 75 -85.60 -157.43 REMARK 500 8 THR A 76 5.89 54.25 REMARK 500 8 ASP A 80 -41.42 -160.39 REMARK 500 8 ASN A 84 27.02 -147.76 REMARK 500 8 GLU A 98 112.17 -174.32 REMARK 500 9 GLU A 7 152.34 -47.01 REMARK 500 9 LEU A 29 -174.47 -174.46 REMARK 500 9 ASN A 64 -161.39 -173.71 REMARK 500 9 GLU A 72 64.83 36.78 REMARK 500 9 ALA A 73 -171.86 171.79 REMARK 500 9 GLU A 75 -100.16 -144.25 REMARK 500 9 THR A 76 63.13 39.60 REMARK 500 9 SER A 85 97.57 66.37 REMARK 500 9 ASP A 94 -166.63 43.97 REMARK 500 9 TRP A 95 21.98 -68.25 REMARK 500 10 PRO A 16 95.80 -50.26 REMARK 500 10 LEU A 29 -169.53 -178.80 REMARK 500 10 GLN A 55 147.08 -173.98 REMARK 500 10 ASN A 64 -160.37 -176.73 REMARK 500 10 GLU A 72 18.83 47.34 REMARK 500 10 THR A 76 44.25 -157.84 REMARK 500 10 ASP A 80 -29.47 -155.48 REMARK 500 10 SER A 85 86.77 64.87 REMARK 500 10 GLU A 98 93.55 -174.97 REMARK 500 11 PRO A 16 88.42 -58.69 REMARK 500 11 LEU A 29 -176.72 -174.43 REMARK 500 11 ASN A 64 -165.16 176.04 REMARK 500 11 GLU A 72 57.65 36.92 REMARK 500 11 GLU A 75 81.24 -170.73 REMARK 500 11 ASP A 80 -30.17 -142.11 REMARK 500 11 SER A 85 88.92 56.82 REMARK 500 12 PRO A 16 99.95 -59.75 REMARK 500 12 LEU A 29 176.28 179.35 REMARK 500 12 GLU A 54 -82.01 -69.33 REMARK 500 12 ASN A 64 -153.57 -172.22 REMARK 500 12 GLU A 72 -16.26 60.59 REMARK 500 12 ALA A 73 -158.09 37.96 REMARK 500 12 GLU A 74 3.31 56.34 REMARK 500 12 GLU A 75 -19.98 179.25 REMARK 500 12 LEU A 77 -74.67 -78.50 REMARK 500 12 ALA A 82 -9.04 -54.86 REMARK 500 12 SER A 85 99.12 75.70 REMARK 500 12 GLU A 98 108.22 -175.51 REMARK 500 13 PRO A 16 96.77 -51.23 REMARK 500 13 LEU A 29 -176.61 -176.36 REMARK 500 13 HIS A 51 36.98 -80.11 REMARK 500 13 GLU A 54 -80.96 -66.79 REMARK 500 13 ASN A 64 -160.06 -171.89 REMARK 500 13 GLU A 72 -26.29 63.94 REMARK 500 13 ALA A 73 -158.79 -92.43 REMARK 500 13 GLU A 75 36.70 -170.92 REMARK 500 13 THR A 76 40.46 -94.46 REMARK 500 13 ASP A 80 -39.74 -142.52 REMARK 500 13 SER A 83 78.26 -106.90 REMARK 500 13 SER A 85 88.39 64.59 REMARK 500 14 SER A 5 102.73 51.54 REMARK 500 14 LEU A 29 -172.51 -177.79 REMARK 500 14 GLU A 54 -104.72 -78.96 REMARK 500 14 ASN A 64 -159.67 -174.16 REMARK 500 14 GLU A 72 -100.99 59.49 REMARK 500 14 THR A 76 42.88 -87.81 REMARK 500 14 ASP A 80 -32.75 -144.90 REMARK 500 14 SER A 85 92.52 64.24 REMARK 500 15 SER A 5 3.63 54.27 REMARK 500 15 GLU A 7 151.93 -44.69 REMARK 500 15 PRO A 8 156.32 -38.65 REMARK 500 15 LEU A 29 -170.30 -176.29 REMARK 500 15 ASN A 64 -160.67 -161.68 REMARK 500 15 GLU A 72 38.35 32.77 REMARK 500 15 ALA A 73 -156.67 -159.20 REMARK 500 15 GLU A 75 -111.70 -161.17 REMARK 500 15 THR A 76 28.79 38.86 REMARK 500 15 SER A 85 82.58 62.13 REMARK 500 16 LEU A 3 -171.87 53.13 REMARK 500 16 GLU A 7 103.93 -41.01 REMARK 500 16 LEU A 29 -167.01 -179.85 REMARK 500 16 HIS A 51 54.47 -94.53 REMARK 500 16 GLU A 52 150.24 -46.61 REMARK 500 16 GLN A 55 -158.98 -168.90 REMARK 500 16 ASN A 64 -166.75 -163.58 REMARK 500 16 GLU A 72 57.04 37.74 REMARK 500 16 GLU A 75 80.39 -170.23 REMARK 500 16 THR A 76 59.65 -118.02 REMARK 500 16 ASP A 80 -33.95 -142.63 REMARK 500 16 SER A 83 59.54 -102.60 REMARK 500 16 SER A 85 87.64 66.69 REMARK 500 16 ASP A 94 -165.59 43.90 REMARK 500 16 TRP A 95 20.87 -70.04 REMARK 500 16 GLU A 98 126.22 -174.75 REMARK 500 17 MET A 6 -129.90 49.83 REMARK 500 17 LEU A 29 -179.56 -176.78 REMARK 500 17 GLN A 55 -156.05 -172.39 REMARK 500 17 ASN A 64 -160.98 -172.22 REMARK 500 17 GLU A 72 -101.11 49.32 REMARK 500 17 THR A 76 46.69 -100.03 REMARK 500 17 ASP A 80 -38.70 -141.57 REMARK 500 17 ALA A 82 -11.53 -47.00 REMARK 500 17 SER A 85 89.76 72.04 REMARK 500 17 GLU A 98 121.45 -175.04 REMARK 500 18 LEU A 29 177.80 178.97 REMARK 500 18 HIS A 51 45.98 -73.23 REMARK 500 18 GLN A 55 -162.92 -174.40 REMARK 500 18 ASN A 64 -150.50 -172.04 REMARK 500 18 GLU A 72 56.42 39.16 REMARK 500 18 GLU A 75 92.34 -166.08 REMARK 500 18 ASP A 80 -39.88 -143.86 REMARK 500 18 SER A 85 88.60 66.75 REMARK 500 19 GLU A 7 151.35 -42.58 REMARK 500 19 LEU A 29 -173.41 -175.75 REMARK 500 19 ASN A 64 -162.11 -174.90 REMARK 500 19 GLU A 72 -86.69 48.50 REMARK 500 19 GLU A 75 -70.37 -54.90 REMARK 500 19 THR A 76 -26.60 73.54 REMARK 500 19 ASP A 80 -37.63 -173.11 REMARK 500 19 ASN A 84 36.99 -158.15 REMARK 500 20 GLN A 15 79.90 -104.38 REMARK 500 20 PRO A 16 96.45 -61.70 REMARK 500 20 LEU A 29 -172.30 -176.80 REMARK 500 20 HIS A 51 95.09 -43.07 REMARK 500 20 GLU A 52 96.62 -37.04 REMARK 500 20 GLU A 54 -17.77 -149.39 REMARK 500 20 ASN A 64 -163.71 -170.73 REMARK 500 20 GLU A 72 18.23 42.78 REMARK 500 20 GLU A 75 78.68 -160.50 REMARK 500 20 ASP A 80 -41.68 -157.10 REMARK 500 20 SER A 85 91.80 79.49 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 12671 RELATED DB: BMRB
DBREF 2KIE A 6 124 UNP Q01968 OCRL_HUMAN 1 119
SEQADV 2KIE GLY A 1 UNP Q01968 EXPRESSION TAG SEQADV 2KIE PRO A 2 UNP Q01968 EXPRESSION TAG SEQADV 2KIE LEU A 3 UNP Q01968 EXPRESSION TAG SEQADV 2KIE GLY A 4 UNP Q01968 EXPRESSION TAG SEQADV 2KIE SER A 5 UNP Q01968 EXPRESSION TAG
SEQRES 1 A 124 GLY PRO LEU GLY SER MET GLU PRO PRO LEU PRO VAL GLY SEQRES 2 A 124 ALA GLN PRO LEU ALA THR VAL GLU GLY MET GLU MET LYS SEQRES 3 A 124 GLY PRO LEU ARG GLU PRO CYS ALA LEU THR LEU ALA GLN SEQRES 4 A 124 ARG ASN GLY GLN TYR GLU LEU ILE ILE GLN LEU HIS GLU SEQRES 5 A 124 LYS GLU GLN HIS VAL GLN ASP ILE ILE PRO ILE ASN SER SEQRES 6 A 124 HIS PHE ARG CYS VAL GLN GLU ALA GLU GLU THR LEU LEU SEQRES 7 A 124 ILE ASP ILE ALA SER ASN SER GLY CYS LYS ILE ARG VAL SEQRES 8 A 124 GLN GLY ASP TRP ILE ARG GLU ARG ARG PHE GLU ILE PRO SEQRES 9 A 124 ASP GLU GLU HIS CYS LEU LYS PHE LEU SER ALA VAL LEU SEQRES 10 A 124 ALA ALA GLN LYS ALA GLN SER
HELIX 1 1 ASP A 80 ASN A 84 5 5 HELIX 2 2 ASP A 105 SER A 124 1 20
SHEET 1 A 7 VAL A 57 PRO A 62 0 SHEET 2 A 7 GLN A 43 LEU A 50 -1 N LEU A 46 O ILE A 61 SHEET 3 A 7 LEU A 29 ARG A 40 -1 N ALA A 34 O GLN A 49 SHEET 4 A 7 GLN A 15 LYS A 26 -1 N GLU A 24 O GLU A 31 SHEET 5 A 7 ARG A 99 ILE A 103 -1 O GLU A 102 N MET A 23 SHEET 6 A 7 CYS A 87 GLN A 92 -1 N ILE A 89 O PHE A 101 SHEET 7 A 7 ARG A 68 GLN A 71 -1 N VAL A 70 O ARG A 90
SSBOND 1 CYS A 87 CYS A 109 1555 1555 2.02
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000