10 20 30 40 50 60 70 80 2KG5 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 05-MAR-09 2KG5
TITLE NMR SOLUTION STRUCTURE OF ARAP3-SAM
COMPND MOL_ID: 1; COMPND 2 MOLECULE: ARF-GAP, RHO-GAP DOMAIN, ANK REPEAT AND PH COMPND 3 DOMAIN-CONTAINING PROTEIN 3; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SAM DOMAIN, RESIDUES 1-80; COMPND 6 SYNONYM: CENTAURIN-DELTA-3, CNT-D3; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: ARAP3, CENTD3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B
KEYWDS SAM DOMAIN, HELIX BUNDLE, CELL MEMBRANE, CELL PROJECTION, KEYWDS 2 CYTOPLASM, CYTOSKELETON, GTPASE ACTIVATION, MEMBRANE, KEYWDS 3 METAL-BINDING, PHOSPHOPROTEIN, POLYMORPHISM, ZINC, ZINC- KEYWDS 4 FINGER, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR M.LEONE,M.PELLECCHIA
REVDAT 1 17-NOV-09 2KG5 0
JRNL AUTH M.LEONE,J.CELLITTI,M.PELLECCHIA JRNL TITL THE SAM DOMAIN OF THE LIPID PHOSPHATASE SHIP2 JRNL TITL 2 ADOPTS A COMMON MODEL TO INTERACT WITH ARAP3-SAM JRNL TITL 3 AND EPHA2-SAM. JRNL REF BMC STRUCT.BIOL. V. 9 59 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19765305 JRNL DOI 10.1186/1472-6807-9-59
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE GENERATED BY REMARK 3 ONLY USING CYANA
REMARK 4 REMARK 4 2KG5 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB101078.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.7 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM PROTEIN, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 137 MM REMARK 210 SODIUM CHLORIDE, 11.9 MM REMARK 210 PHOSPHATES, 0.3% MM SODIUM REMARK 210 AZIDE, 100% D2O; 1 MM [U-100% REMARK 210 15N] PROTEIN, 2.7 MM POTASSIUM REMARK 210 CHLORIDE, 137 MM SODIUM REMARK 210 CHLORIDE, 11.9 MM PHOSPHATES, REMARK 210 0.3% MM SODIUM AZIDE, 95% H2O/ REMARK 210 5% D2O; 1 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN, 2.7 MM REMARK 210 POTASSIUM CHLORIDE, 137 MM REMARK 210 SODIUM CHLORIDE, 11.9 MM REMARK 210 PHOSPHATES, 0.3% MM SODIUM REMARK 210 AZIDE, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 3D 1H-15N REMARK 210 NOESY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XEASY, CYANA 2.1, TOPSPIN 2.1 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 3 REMARK 465 SER A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 SER A 11 REMARK 465 SER A 12 REMARK 465 GLY A 13 REMARK 465 LEU A 14 REMARK 465 VAL A 15 REMARK 465 PRO A 16 REMARK 465 ARG A 17 REMARK 465 GLY A 18 REMARK 465 SER A 19
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 22 -174.35 55.30 REMARK 500 1 ASP A 26 45.67 -91.70 REMARK 500 1 GLU A 88 85.81 56.26 REMARK 500 1 LEU A 91 82.77 52.47 REMARK 500 1 LYS A 94 57.89 -150.20 REMARK 500 1 SER A 97 167.71 62.57 REMARK 500 1 ALA A 98 -50.22 -146.73 REMARK 500 1 MET A 99 -55.45 -162.82 REMARK 500 2 ASP A 26 47.00 -90.90 REMARK 500 2 ARG A 57 104.23 -50.23 REMARK 500 2 SER A 70 25.42 -159.63 REMARK 500 2 THR A 72 -68.97 72.58 REMARK 500 2 SER A 95 97.05 61.09 REMARK 500 3 PRO A 24 -171.27 -69.80 REMARK 500 3 ARG A 57 104.03 -50.44 REMARK 500 3 THR A 84 153.49 -49.28 REMARK 500 3 GLU A 88 -69.07 -177.41 REMARK 500 3 SER A 90 117.62 -175.03 REMARK 500 3 ASP A 92 72.55 55.91 REMARK 500 3 SER A 95 -68.92 -97.14 REMARK 500 3 ASP A 96 -166.57 46.59 REMARK 500 3 SER A 97 -61.73 -157.32 REMARK 500 4 ALA A 22 -177.23 58.19 REMARK 500 4 PRO A 24 -172.72 -69.80 REMARK 500 4 ASP A 26 49.51 -93.49 REMARK 500 4 ARG A 57 103.88 -50.45 REMARK 500 4 GLU A 88 141.62 -178.22 REMARK 500 4 LEU A 91 -74.89 -131.11 REMARK 500 4 ASP A 96 115.29 -176.22 REMARK 500 4 SER A 97 130.67 -176.66 REMARK 500 4 ALA A 98 115.83 -174.49 REMARK 500 5 ARG A 57 107.94 -50.37 REMARK 500 5 THR A 86 -46.01 -141.07 REMARK 500 5 GLU A 88 129.63 -177.36 REMARK 500 5 LEU A 91 138.73 -179.20 REMARK 500 5 ASP A 92 73.29 58.49 REMARK 500 5 SER A 95 -73.80 -100.90 REMARK 500 5 ALA A 98 103.96 -177.81 REMARK 500 5 MET A 99 -51.19 -154.43 REMARK 500 6 ALA A 22 176.50 58.94 REMARK 500 6 ASP A 26 48.74 -89.74 REMARK 500 6 ARG A 57 104.17 -50.34 REMARK 500 6 SER A 90 43.92 -172.40 REMARK 500 6 LEU A 91 125.82 -174.03 REMARK 500 6 LYS A 94 -177.24 58.23 REMARK 500 6 ASP A 96 57.18 -164.02 REMARK 500 6 ALA A 98 176.43 63.08 REMARK 500 7 ALA A 22 -176.94 57.01 REMARK 500 7 ASP A 26 46.34 -91.23 REMARK 500 7 ARG A 57 103.99 -50.25 REMARK 500 REMARK 500 THIS ENTRY HAS 166 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 2KG5 A 21 100 UNP Q8WWN8 ARAP3_HUMAN 1 80
SEQADV 2KG5 MET A 1 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 2 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 3 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 4 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 5 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 6 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 7 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 8 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 9 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 10 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 11 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 12 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 13 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 LEU A 14 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 VAL A 15 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 PRO A 16 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 ARG A 17 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 GLY A 18 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 SER A 19 UNP Q8WWN8 EXPRESSION TAG SEQADV 2KG5 HIS A 20 UNP Q8WWN8 EXPRESSION TAG
SEQRES 1 A 100 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 100 LEU VAL PRO ARG GLY SER HIS MET ALA ALA PRO GLN ASP SEQRES 3 A 100 LEU ASP ILE ALA VAL TRP LEU ALA THR VAL HIS LEU GLU SEQRES 4 A 100 GLN TYR ALA ASP THR PHE ARG ARG HIS GLY LEU ALA THR SEQRES 5 A 100 ALA GLY ALA ALA ARG GLY LEU GLY HIS GLU GLU LEU LYS SEQRES 6 A 100 GLN LEU GLY ILE SER ALA THR GLY HIS ARG LYS ARG ILE SEQRES 7 A 100 LEU ARG LEU LEU GLN THR GLY THR GLU GLU GLY SER LEU SEQRES 8 A 100 ASP PRO LYS SER ASP SER ALA MET GLU
HELIX 1 1 ASP A 28 ALA A 34 1 7 HELIX 2 2 THR A 35 HIS A 37 5 3 HELIX 3 3 LEU A 38 GLN A 40 5 3 HELIX 4 4 TYR A 41 HIS A 48 1 8 HELIX 5 5 THR A 52 ARG A 57 1 6 HELIX 6 6 GLY A 60 GLY A 68 1 9 HELIX 7 7 ALA A 71 GLN A 83 1 13
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000