10 20 30 40 50 60 70 80 2KFS - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA-BINDING PROTEIN 27-FEB-09 2KFS
TITLE NMR STRUCTURE OF RV2175C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL REGULATORY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: RV2175C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET15B-TEV
KEYWDS WHTH, DNA BINDING, PHOSPHORYLATION, DNA-BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR P.BARTHE,M.COHEN-GONSAUD,C.ROUMESTAND,V.MOLLE
REVDAT 2 28-JUL-09 2KFS 1 JRNL REVDAT 1 19-MAY-09 2KFS 0
JRNL AUTH M.COHEN-GONSAUD,P.BARTHE,M.J.CANOVA, JRNL AUTH 2 C.STAGIER-SIMON,L.KREMER,C.ROUMESTAND,V.MOLLE JRNL TITL THE MYCOBACTERIUM TUBERCULOSIS SER/THR KINASE JRNL TITL 2 SUBSTRATE RV2175C IS A DNA-BINDING PROTEIN JRNL TITL 3 REGULATED BY PHOSPHORYLATION. JRNL REF J.BIOL.CHEM. V. 284 19290 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19457863 JRNL DOI 10.1074/JBC.M109.019653
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KFS COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-09. REMARK 100 THE RCSB ID CODE IS RCSB101066.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 4.6 REMARK 210 IONIC STRENGTH : 0.15 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 300 MM [U-15N] RV2175C, 10 MM REMARK 210 SODIUM ACETATE, 150 MM SODIUM REMARK 210 CHLORIDE, 95% H2O/5% D2O; 300 REMARK 210 MM [U-13C; U-15N] RV2175C, 10 REMARK 210 MM SODIUM ACETATE, 150 MM REMARK 210 SODIUM CHLORIDE, 95% H2O/5% REMARK 210 D2O; 300 MM RV2175C, 10 MM REMARK 210 SODIUM ACETATE, 150 MM SODIUM REMARK 210 CHLORIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D 1H-15N REMARK 210 TOCSY; 2D 1H-1H NOESY; 3D REMARK 210 HNCA; 3D CBCA(CO)NH; 3D HNCO; REMARK 210 3D HCACO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.44, CINDY 1.7A, CYANA REMARK 210 2.1, PROCHECK 3.5.4 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 6 41.92 -76.84 REMARK 500 1 ALA A 61 -16.81 67.03 REMARK 500 1 ASN A 122 68.63 67.10 REMARK 500 3 VAL A 13 25.33 -144.66 REMARK 500 3 ASN A 122 69.06 75.46 REMARK 500 4 ALA A 5 89.31 -152.57 REMARK 500 4 PRO A 6 97.81 -65.42 REMARK 500 4 SER A 15 159.31 178.33 REMARK 500 4 ASN A 122 64.72 66.71 REMARK 500 5 ARG A 12 77.53 -106.62 REMARK 500 5 ALA A 61 -59.16 70.63 REMARK 500 6 ASP A 114 101.00 -57.01 REMARK 500 6 ASN A 122 69.33 69.36 REMARK 500 7 ASN A 122 69.33 72.40 REMARK 500 8 ALA A 5 102.94 -172.24 REMARK 500 8 VAL A 13 79.49 -119.57 REMARK 500 8 PRO A 28 106.91 -31.08 REMARK 500 9 THR A 9 -161.13 -162.84 REMARK 500 9 ASP A 114 99.37 -63.66 REMARK 500 10 SER A 8 99.91 -69.98 REMARK 500 10 ALA A 61 -48.06 72.96 REMARK 500 11 ARG A 12 97.73 -58.38 REMARK 500 11 PRO A 28 106.51 -42.85 REMARK 500 11 ALA A 61 9.55 57.11 REMARK 500 11 ASP A 114 70.87 47.02 REMARK 500 11 ASN A 122 68.32 61.81 REMARK 500 12 PRO A 28 107.94 -39.68 REMARK 500 13 ALA A 5 118.05 -36.99 REMARK 500 13 ASP A 114 88.87 49.88 REMARK 500 13 ASP A 118 -175.60 171.77 REMARK 500 13 ASN A 122 70.30 68.22 REMARK 500 14 PRO A 6 33.03 -87.00 REMARK 500 14 ALA A 61 -51.68 63.58 REMARK 500 14 ASN A 122 72.26 74.36 REMARK 500 15 SER A 8 134.92 177.68 REMARK 500 15 ASP A 118 -169.92 -102.66 REMARK 500 16 PRO A 6 -169.25 -77.93 REMARK 500 18 PRO A 28 98.39 -55.27 REMARK 500 18 ALA A 61 -15.78 70.04 REMARK 500 18 ARG A 117 16.94 -68.51 REMARK 500 19 PRO A 6 -178.63 -67.83 REMARK 500 19 ARG A 12 75.68 -104.29 REMARK 500 19 VAL A 22 45.14 -96.83 REMARK 500 20 PRO A 28 110.64 -36.46 REMARK 500 20 ASN A 122 66.44 68.12 REMARK 500 22 ARG A 100 -71.26 -52.56 REMARK 500 22 SER A 116 87.31 -67.19 REMARK 500 22 ASN A 122 40.42 70.10 REMARK 500 23 PRO A 6 -162.47 -79.39 REMARK 500 23 ALA A 61 -53.19 70.96 REMARK 500 23 ASN A 122 69.00 78.30 REMARK 500 24 ALA A 5 83.18 63.06 REMARK 500 24 PRO A 28 106.53 -56.64 REMARK 500 24 ASP A 114 120.33 161.78 REMARK 500 25 PRO A 28 99.91 -60.88 REMARK 500 25 ASN A 122 62.98 65.63 REMARK 500 26 SER A 15 163.89 174.24 REMARK 500 26 ASN A 122 63.58 65.26 REMARK 500 27 ASP A 118 -172.95 -175.34 REMARK 500 28 ALA A 61 -40.80 72.68 REMARK 500 28 ASN A 122 72.97 75.38 REMARK 500 29 ALA A 5 98.36 63.63 REMARK 500 29 PRO A 28 107.63 -43.19 REMARK 500 30 ALA A 5 127.80 159.70 REMARK 500 30 ASN A 122 70.55 68.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 124 0.08 SIDE_CHAIN REMARK 500 5 ARG A 60 0.08 SIDE_CHAIN REMARK 500 6 ARG A 124 0.08 SIDE_CHAIN REMARK 500 8 ARG A 135 0.07 SIDE_CHAIN REMARK 500 10 ARG A 124 0.08 SIDE_CHAIN REMARK 500 12 ARG A 124 0.08 SIDE_CHAIN REMARK 500 13 ARG A 60 0.08 SIDE_CHAIN REMARK 500 15 ARG A 124 0.08 SIDE_CHAIN REMARK 500 17 ARG A 100 0.07 SIDE_CHAIN REMARK 500 19 ARG A 60 0.09 SIDE_CHAIN REMARK 500 19 ARG A 94 0.11 SIDE_CHAIN REMARK 500 22 ARG A 100 0.10 SIDE_CHAIN REMARK 500 22 ARG A 113 0.08 SIDE_CHAIN REMARK 500 23 ARG A 34 0.07 SIDE_CHAIN REMARK 500 28 ARG A 51 0.08 SIDE_CHAIN REMARK 500 28 ARG A 100 0.08 SIDE_CHAIN REMARK 500 30 ARG A 34 0.07 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 5 ASN A 122 24.5 L L OUTSIDE RANGE REMARK 500 15 LEU A 23 23.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16188 RELATED DB: BMRB
DBREF 2KFS A 1 146 UNP O53509 O53509_MYCTU 1 146
SEQADV 2KFS GLY A -1 UNP O53509 EXPRESSION TAG SEQADV 2KFS HIS A 0 UNP O53509 EXPRESSION TAG
SEQRES 1 A 148 GLY HIS MET PRO GLY ARG ALA PRO GLY SER THR LEU ALA SEQRES 2 A 148 ARG VAL GLY SER ILE PRO ALA GLY ASP ASP VAL LEU ASP SEQRES 3 A 148 PRO ASP GLU PRO THR TYR ASP LEU PRO ARG VAL ALA GLU SEQRES 4 A 148 LEU LEU GLY VAL PRO VAL SER LYS VAL ALA GLN GLN LEU SEQRES 5 A 148 ARG GLU GLY HIS LEU VAL ALA VAL ARG ARG ALA GLY GLY SEQRES 6 A 148 VAL VAL ILE PRO GLN VAL PHE PHE THR ASN SER GLY GLN SEQRES 7 A 148 VAL VAL LYS SER LEU PRO GLY LEU LEU THR ILE LEU HIS SEQRES 8 A 148 ASP GLY GLY TYR ARG ASP THR GLU ILE MET ARG TRP LEU SEQRES 9 A 148 PHE THR PRO ASP PRO SER LEU THR ILE THR ARG ASP GLY SEQRES 10 A 148 SER ARG ASP ALA VAL SER ASN ALA ARG PRO VAL ASP ALA SEQRES 11 A 148 LEU HIS ALA HIS GLN ALA ARG GLU VAL VAL ARG ARG ALA SEQRES 12 A 148 GLN ALA MET ALA TYR
HELIX 1 1 LEU A 32 GLY A 40 1 9 HELIX 2 2 PRO A 42 GLU A 52 1 11 HELIX 3 3 VAL A 69 PHE A 71 5 3 HELIX 4 4 SER A 80 GLY A 91 1 12 HELIX 5 5 ARG A 94 PHE A 103 1 10 HELIX 6 6 ARG A 124 ALA A 131 1 8 HELIX 7 7 GLN A 133 TYR A 146 1 14
SHEET 1 A 3 THR A 29 ASP A 31 0 SHEET 2 A 3 GLY A 63 PRO A 67 -1 O ILE A 66 N TYR A 30 SHEET 3 A 3 VAL A 58 ARG A 60 -1 N VAL A 58 O VAL A 65 SHEET 1 B 2 ASP A 106 THR A 112 0 SHEET 2 B 2 ALA A 119 ALA A 123 -1 O VAL A 120 N ILE A 111
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000