10 20 30 40 50 60 70 80 2KCY - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RIBOSOMAL PROTEIN 30-DEC-08 2KCY
TITLE SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S8E FROM TITLE 2 METHANOTHERMOBACTER THERMAUTOTROPHICUS, TITLE 3 NORTHEASTSTRUCTURAL GENOMICS CONSORTIUM (NESG) TARGET TR71D
COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30S RIBOSOMAL PROTEIN S8E; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER SOURCE 3 THERMAUTOTROPHICUS STR. DELTA H; SOURCE 4 ORGANISM_TAXID: 187420; SOURCE 5 GENE: RPS8E, MTH_207; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET 21-23C
KEYWDS RIBOSOMAL PROTEIN S8E, RSP8E, RDC, NESG, BETA, KEYWDS 2 RIBONUCLEOPROTEIN, RIBOSOMAL PROTEIN, STRUCTURAL GENOMICS, KEYWDS 3 PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL KEYWDS 4 GENOMICS CONSORTIUM
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR G.LIU,P.ROSSI,D.WANG,C.NWOSU,L.OWENS,R.XIAO,J.LIU,M.C.BARAN, AUTHOR 2 G.SWAPNA,T.B.ACTON,B.C.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 1 20-JAN-09 2KCY 0
JRNL AUTH G.LIU,P.ROSSI,G.T.MONTELIONE JRNL TITL SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S8E FROM JRNL TITL 2 METHANOTHERMOBACTER THERMAUTOTROPHICUS, JRNL TITL 3 NORTHEASTSTRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL 4 TARGET TR71D JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS, CYANA 3.0, AUTOSTRUCTURE, PSVS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 (CNS), GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 , HUANG, TEJERO, POWERS AND MONTELIONE REMARK 3 (AUTOSTRUCTURE), BHATTACHARYA AND MONTELIONE REMARK 3 (PSVS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KCY COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JAN-09. REMARK 100 THE RCSB ID CODE IS RCSB100965.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : N.A. REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.94 MM [U-100% 13C; U-100% REMARK 210 15N] PROTEIN-1, 95% H2O/5% REMARK 210 D2O; 1.0 MM [U-10% 13C; U-99% REMARK 210 15N] PROTEIN-2, 95% H2O/5% REMARK 210 D2O; 0.94 MM [U-100% 13C; U- REMARK 210 100% 15N] PROTEIN-3, 100% D2O; REMARK 210 1.0 MM [U-10% 13C; U-99% 15N] REMARK 210 PROTEIN-4, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 3D 1H-15N REMARK 210 NOESY, 3D 1H-13C NOESY, 3D REMARK 210 HNCO, 3D CBCA(CO)NH, 3D REMARK 210 HNCACB, 3D C(CO)NH, 3D REMARK 210 HBHA(CO)NH, 2D 1H-13C HSQC, 2D REMARK 210 1H-15N HSQC_TROSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE, INOVA REMARK 210 SPECTROMETER MANUFACTURER : BRUKER, GE, VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CNS, CYANA 3.0, REMARK 210 AUTOSTRUCTURE, XEASY, REMARK 210 AUTOASSIGN, NMRPIPE, TOPSPIN, REMARK 210 VNMRJ, PSVS REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS, REMARK 210 TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 6 77.83 -116.30 REMARK 500 1 LEU A 19 100.09 -48.43 REMARK 500 1 ALA A 20 -55.97 -164.82 REMARK 500 1 ASN A 49 119.83 66.48 REMARK 500 1 PRO A 50 99.98 -50.34 REMARK 500 1 ARG A 54 28.27 -143.20 REMARK 500 1 PRO A 77 103.83 -59.75 REMARK 500 1 GLN A 79 -71.80 -67.31 REMARK 500 1 ASP A 80 30.84 -89.27 REMARK 500 1 GLU A 92 73.00 56.94 REMARK 500 1 HIS A 93 -69.97 -97.04 REMARK 500 2 ASP A 22 -63.35 -15.51 REMARK 500 2 GLU A 45 -63.21 -132.82 REMARK 500 2 PHE A 52 87.44 59.51 REMARK 500 2 ASP A 80 -1.37 67.62 REMARK 500 2 GLU A 92 93.28 -65.58 REMARK 500 3 ALA A 20 -36.84 -147.94 REMARK 500 3 SER A 21 -158.28 -87.24 REMARK 500 3 ASP A 22 128.78 -28.67 REMARK 500 3 VAL A 44 94.41 -163.00 REMARK 500 3 ASN A 46 -17.48 -167.03 REMARK 500 3 VAL A 53 105.00 -58.21 REMARK 500 3 ARG A 55 94.21 -59.23 REMARK 500 3 ASN A 56 -159.38 -80.17 REMARK 500 3 HIS A 94 -59.44 -136.57 REMARK 500 4 THR A 10 76.65 50.76 REMARK 500 4 THR A 15 81.46 -68.37 REMARK 500 4 VAL A 17 -149.15 -124.20 REMARK 500 4 ARG A 18 -156.74 -75.12 REMARK 500 4 LEU A 19 40.36 -77.06 REMARK 500 4 ASP A 22 -76.06 -170.91 REMARK 500 4 GLU A 45 -164.36 55.33 REMARK 500 4 ASP A 80 -22.95 76.71 REMARK 500 4 HIS A 96 81.41 66.35 REMARK 500 5 THR A 10 -74.78 -69.33 REMARK 500 5 ARG A 11 -65.32 -174.46 REMARK 500 5 ARG A 18 -170.03 -63.76 REMARK 500 5 LEU A 19 90.61 -57.10 REMARK 500 5 SER A 21 -42.21 -157.26 REMARK 500 5 GLU A 45 -83.46 -142.42 REMARK 500 5 THR A 47 78.85 55.60 REMARK 500 5 HIS A 51 -7.26 77.52 REMARK 500 5 ILE A 57 90.97 -67.31 REMARK 500 5 GLU A 90 -77.05 -95.80 REMARK 500 5 HIS A 95 -33.83 -170.80 REMARK 500 6 THR A 10 101.49 66.16 REMARK 500 6 LYS A 16 -80.22 -120.11 REMARK 500 6 ARG A 18 -156.19 -82.35 REMARK 500 6 LEU A 19 42.57 -79.90 REMARK 500 6 ALA A 20 48.96 -87.33 REMARK 500 6 SER A 21 -57.35 -151.30 REMARK 500 6 ASN A 49 94.88 67.53 REMARK 500 6 PHE A 52 74.15 60.83 REMARK 500 6 VAL A 53 104.60 -57.81 REMARK 500 6 PRO A 77 43.16 -77.62 REMARK 500 6 GLN A 79 -72.33 67.88 REMARK 500 6 GLU A 90 -75.90 -64.80 REMARK 500 7 SER A 21 -70.33 68.55 REMARK 500 7 ASN A 46 123.33 171.98 REMARK 500 7 THR A 47 -74.18 -143.91 REMARK 500 7 ALA A 48 115.30 -175.12 REMARK 500 7 ASN A 49 88.73 62.78 REMARK 500 7 ASN A 56 21.05 -78.50 REMARK 500 8 VAL A 5 93.15 -60.42 REMARK 500 8 THR A 10 89.75 -66.64 REMARK 500 8 ARG A 11 105.13 -170.42 REMARK 500 8 LEU A 19 102.72 -52.41 REMARK 500 8 ALA A 20 -54.30 -135.32 REMARK 500 8 VAL A 44 90.67 -68.05 REMARK 500 8 ASN A 49 90.42 -162.83 REMARK 500 8 ARG A 55 -49.24 -150.72 REMARK 500 8 GLU A 92 70.90 64.91 REMARK 500 9 LEU A 19 26.13 -140.52 REMARK 500 9 SER A 21 -66.14 -132.81 REMARK 500 9 ASN A 46 -19.43 71.77 REMARK 500 9 THR A 47 98.07 -67.16 REMARK 500 9 HIS A 51 -42.26 -161.27 REMARK 500 9 ARG A 54 -32.83 -171.24 REMARK 500 9 PRO A 77 96.02 -62.37 REMARK 500 9 LEU A 91 -151.86 -99.63 REMARK 500 9 HIS A 93 30.68 -92.53 REMARK 500 10 ARG A 18 -178.05 -63.33 REMARK 500 10 ALA A 20 74.91 52.41 REMARK 500 10 SER A 21 -16.54 74.52 REMARK 500 10 ASN A 49 84.09 59.36 REMARK 500 10 ILE A 57 82.08 60.42 REMARK 500 10 ASP A 80 -15.79 70.26 REMARK 500 10 GLU A 90 -80.91 -93.20 REMARK 500 11 VAL A 5 96.50 -39.44 REMARK 500 11 THR A 10 92.30 -64.74 REMARK 500 11 LYS A 16 128.44 67.15 REMARK 500 11 ALA A 20 -85.54 -121.06 REMARK 500 11 VAL A 44 96.81 -162.33 REMARK 500 11 THR A 47 -58.45 65.52 REMARK 500 11 ASN A 49 74.98 -173.10 REMARK 500 11 HIS A 95 72.57 -108.51 REMARK 500 11 HIS A 96 88.63 -171.53 REMARK 500 12 ASN A 14 96.64 -164.44 REMARK 500 12 LEU A 19 91.81 -51.95 REMARK 500 12 VAL A 53 49.49 -79.37 REMARK 500 12 ARG A 54 51.28 -91.76 REMARK 500 12 PRO A 77 101.61 -51.72 REMARK 500 12 ASP A 80 -19.12 76.89 REMARK 500 12 GLU A 90 -68.51 -149.83 REMARK 500 12 HIS A 93 95.35 -63.87 REMARK 500 13 LYS A 16 91.53 65.63 REMARK 500 13 ALA A 20 -70.73 -142.01 REMARK 500 13 PRO A 50 27.52 -79.04 REMARK 500 13 ASP A 80 32.87 -91.73 REMARK 500 13 HIS A 93 109.86 -57.66 REMARK 500 13 HIS A 96 147.05 -174.09 REMARK 500 14 ARG A 11 -33.99 -131.16 REMARK 500 14 GLU A 45 43.65 -95.05 REMARK 500 14 ASN A 46 83.90 55.24 REMARK 500 14 THR A 47 -72.18 -135.80 REMARK 500 14 ALA A 48 -175.72 -175.81 REMARK 500 14 ASN A 49 77.23 -163.36 REMARK 500 14 HIS A 51 -57.03 -164.92 REMARK 500 14 VAL A 53 -40.38 -156.98 REMARK 500 14 GLN A 79 98.30 -67.74 REMARK 500 14 ASP A 80 -2.47 74.33 REMARK 500 14 GLU A 90 -64.63 -101.24 REMARK 500 14 GLU A 92 -31.86 71.93 REMARK 500 14 HIS A 96 96.15 -65.00 REMARK 500 15 ASP A 2 83.09 -69.00 REMARK 500 15 LEU A 19 -41.98 77.04 REMARK 500 15 ALA A 20 -76.92 73.39 REMARK 500 15 ALA A 48 90.07 -66.61 REMARK 500 15 ASN A 49 90.81 60.84 REMARK 500 15 SER A 75 -169.90 -113.71 REMARK 500 15 GLN A 79 -66.41 53.23 REMARK 500 15 ASP A 80 41.75 -146.38 REMARK 500 15 HIS A 93 94.50 -63.52 REMARK 500 16 ARG A 11 91.25 -68.79 REMARK 500 16 ARG A 18 -172.24 -64.86 REMARK 500 16 ASP A 29 107.93 -53.85 REMARK 500 16 ASN A 46 85.59 -69.26 REMARK 500 16 ASN A 49 95.71 56.68 REMARK 500 16 ARG A 55 99.26 -164.03 REMARK 500 16 GLU A 90 -78.74 -93.47 REMARK 500 17 LEU A 7 78.08 63.06 REMARK 500 17 ARG A 18 -74.28 -78.53 REMARK 500 17 THR A 47 92.34 -64.97 REMARK 500 17 VAL A 53 -80.49 -71.65 REMARK 500 17 ILE A 57 87.69 -60.59 REMARK 500 17 ASP A 80 -3.65 68.08 REMARK 500 17 GLU A 90 -75.84 -50.43 REMARK 500 17 GLU A 92 99.12 -61.38 REMARK 500 17 HIS A 96 77.59 58.16 REMARK 500 18 ARG A 11 97.39 -62.08 REMARK 500 18 THR A 15 93.79 -69.84 REMARK 500 18 LYS A 34 106.48 -56.92 REMARK 500 18 ASN A 46 61.16 63.52 REMARK 500 18 ALA A 48 -177.10 -179.26 REMARK 500 18 PRO A 50 80.93 -67.32 REMARK 500 18 ARG A 54 9.19 56.31 REMARK 500 18 GLU A 90 -75.62 -121.42 REMARK 500 18 HIS A 93 96.48 -63.03 REMARK 500 18 HIS A 96 85.35 51.87 REMARK 500 19 ARG A 4 91.86 -65.04 REMARK 500 19 SER A 21 -137.92 -104.18 REMARK 500 19 VAL A 44 92.47 -67.34 REMARK 500 19 ASN A 46 -160.91 -177.12 REMARK 500 19 PHE A 52 75.22 -116.62 REMARK 500 19 VAL A 53 19.58 -160.19 REMARK 500 19 ASN A 56 89.20 -66.14 REMARK 500 19 PRO A 77 102.17 -54.32 REMARK 500 19 HIS A 94 127.96 73.59 REMARK 500 19 HIS A 97 -52.48 75.19 REMARK 500 20 ARG A 4 77.71 -101.23 REMARK 500 20 THR A 10 92.72 -50.56 REMARK 500 20 ASN A 14 95.26 -67.26 REMARK 500 20 ARG A 18 -70.37 -84.93 REMARK 500 20 LEU A 19 -81.13 -104.51 REMARK 500 20 ALA A 20 78.05 47.36 REMARK 500 20 SER A 21 -52.75 76.18 REMARK 500 20 ALA A 48 75.87 -156.33 REMARK 500 20 ASN A 49 95.25 64.27 REMARK 500 20 ILE A 57 106.92 -55.09 REMARK 500 20 GLU A 90 -62.10 -105.93 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KCP RELATED DB: PDB REMARK 900 NMR STRUCTURE REFINED WITHOUT RDC CONSTRAINTS REMARK 900 RELATED ID: 16091 RELATED DB: BMRB REMARK 900 NMR CHEMICAL SHIFTS REMARK 900 RELATED ID: TR71D RELATED DB: TARGETDB
DBREF 2KCY A 1 90 UNP O26309 RS8E_METTH 38 127
SEQADV 2KCY LEU A 91 UNP O26309 EXPRESSION TAG SEQADV 2KCY GLU A 92 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 93 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 94 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 95 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 96 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 97 UNP O26309 EXPRESSION TAG SEQADV 2KCY HIS A 98 UNP O26309 EXPRESSION TAG
SEQRES 1 A 98 GLY ASP ARG ARG VAL ARG LEU ILE ARG THR ARG GLY GLY SEQRES 2 A 98 ASN THR LYS VAL ARG LEU ALA SER ASP THR ARG ILE ASN SEQRES 3 A 98 VAL VAL ASP PRO GLU THR GLY LYS VAL GLU ILE ALA GLU SEQRES 4 A 98 ILE ARG ASN VAL VAL GLU ASN THR ALA ASN PRO HIS PHE SEQRES 5 A 98 VAL ARG ARG ASN ILE ILE THR ARG GLY ALA VAL VAL GLU SEQRES 6 A 98 THR ASN LEU GLY ASN VAL ARG VAL THR SER ARG PRO GLY SEQRES 7 A 98 GLN ASP GLY VAL ILE ASN GLY VAL LEU ILE ARG GLU LEU SEQRES 8 A 98 GLU HIS HIS HIS HIS HIS HIS
SHEET 1 A 5 VAL A 35 GLU A 39 0 SHEET 2 A 5 ARG A 24 VAL A 28 -1 N VAL A 27 O GLU A 36 SHEET 3 A 5 ILE A 83 LEU A 87 1 O GLY A 85 N ASN A 26 SHEET 4 A 5 GLY A 69 VAL A 73 -1 N ARG A 72 O VAL A 86 SHEET 5 A 5 VAL A 63 THR A 66 -1 N VAL A 64 O VAL A 71
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000