10 20 30 40 50 60 70 80 2KBT - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER SIGNALING PROTEIN 07-DEC-08 2KBT
TITLE ATTACHMENT OF AN NMR-INVISIBLE SOLUBILITY ENHANCEMENT TAG TITLE 2 (INSET) USING A SORTASE-MEDIATED PROTEIN LIGATION METHOD
COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA OF PROTO-ONCOGENE VAV, LINKER, COMPND 3 IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: SH3 2 DOMAIN OF PROTO-ONCOGENE VAV, UNP RESIDUES COMPND 6 228-282 OF IMMUNOGLOBULIN G-BINDING PROTEIN G; COMPND 7 SYNONYM: P95VAV, IGG-BINDING PROTEIN G; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: A SOLUBILITY-ENHANCEMENT TAG (SET) GB1, COMPND 10 DOMAIN OF IMMUNOGLOBULIN G-BINDING PROTEIN G (INVISIBLE COMPND 11 GB1 TAG), IS NON-LABELED AND ATTACHED TO THE C-TERMINAL COMPND 12 OF 13C/15N-LABELED VAV SH3 DOMAIN WITH PROTEIN LIGATION
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS, SYNTHETIC, SOURCE 3 STREPTOCOCCUS SP. 'GROUP G'; SOURCE 4 ORGANISM_COMMON: MOUSE; SOURCE 5 ORGANISM_TAXID: 10090, 32630, 1320; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET
KEYWDS SORTASE, PROTEIN LIGATION, GB1, INTEIN, INSET, SOLUBILITY KEYWDS 2 ENHANCEMENT, SIGNALING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.KUMETA,Y.KOBASHIGAWA,K.OGURA,F.INAGAKI
REVDAT 2 07-APR-09 2KBT 1 JRNL REVDAT 1 03-FEB-09 2KBT 0
JRNL AUTH Y.KOBASHIGAWA,H.KUMETA,K.OGURA,F.INAGAKI JRNL TITL ATTACHMENT OF AN NMR-INVISIBLE SOLUBILITY JRNL TITL 2 ENHANCEMENT TAG USING A SORTASE-MEDIATED PROTEIN JRNL TITL 3 LIGATION METHOD JRNL REF J.BIOMOL.NMR V. 43 145 2009 JRNL REFN ISSN 0925-2738 JRNL PMID 19140010 JRNL DOI 10.1007/S10858-008-9296-5
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SPARKY 3.110 REMARK 3 AUTHORS : GODDARD REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KBT COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB100925.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 20 MM MES-1, 2 MM DTT-2, 150 REMARK 210 MM NACL-3, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D HNCO, 3D HN(CO)CA, 3D REMARK 210 HNCA, 3D HN(CA)HA, 3D CBCA(CO) REMARK 210 NH, 3D HNCACB, 3D HCCH-TOCSY, REMARK 210 2D 1H-13C HSQC (AROM), 2D (HB) REMARK 210 CB(CGCD)HD, 2D (HB)CB(CGCDCE) REMARK 210 HE, 3D HCCH-TOCSY (AROM), 3D REMARK 210 1H-15N NOESY, 3D 1H-13C NOESY, REMARK 210 3D 1H-13C NOESY (AROM) REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.4, VNMR 6.1C, REMARK 210 RNMRTK 3, SPARKY 3.110, CYANA REMARK 210 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING, DISTANCE REMARK 210 GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 849 REMARK 465 GLY A 850 REMARK 465 GLY A 851 REMARK 465 SER A 852 REMARK 465 GLY A 853 REMARK 465 SER A 854 REMARK 465 SER A 855 REMARK 465 MET A 856 REMARK 465 THR A 857 REMARK 465 TYR A 858 REMARK 465 LYS A 859 REMARK 465 LEU A 860 REMARK 465 ILE A 861 REMARK 465 LEU A 862 REMARK 465 ASN A 863 REMARK 465 GLY A 864 REMARK 465 LYS A 865 REMARK 465 THR A 866 REMARK 465 LEU A 867 REMARK 465 LYS A 868 REMARK 465 GLY A 869 REMARK 465 GLU A 870 REMARK 465 THR A 871 REMARK 465 THR A 872 REMARK 465 THR A 873 REMARK 465 GLU A 874 REMARK 465 ALA A 875 REMARK 465 VAL A 876 REMARK 465 ASP A 877 REMARK 465 ALA A 878 REMARK 465 ALA A 879 REMARK 465 THR A 880 REMARK 465 ALA A 881 REMARK 465 GLU A 882 REMARK 465 LYS A 883 REMARK 465 VAL A 884 REMARK 465 PHE A 885 REMARK 465 LYS A 886 REMARK 465 GLN A 887 REMARK 465 TYR A 888 REMARK 465 ALA A 889 REMARK 465 ASN A 890 REMARK 465 ASP A 891 REMARK 465 ASN A 892 REMARK 465 GLY A 893 REMARK 465 VAL A 894 REMARK 465 ASP A 895 REMARK 465 GLY A 896 REMARK 465 GLU A 897 REMARK 465 TRP A 898 REMARK 465 THR A 899 REMARK 465 TYR A 900 REMARK 465 ASP A 901 REMARK 465 ASP A 902 REMARK 465 ALA A 903 REMARK 465 THR A 904 REMARK 465 LYS A 905 REMARK 465 THR A 906 REMARK 465 PHE A 907 REMARK 465 THR A 908 REMARK 465 VAL A 909 REMARK 465 THR A 910 REMARK 465 GLU A 911 REMARK 465 HIS A 912 REMARK 465 SER A 913 REMARK 465 LEU A 914 REMARK 465 GLU A 915 REMARK 465 HIS A 916 REMARK 465 HIS A 917 REMARK 465 HIS A 918 REMARK 465 HIS A 919 REMARK 465 HIS A 920 REMARK 465 HIS A 921
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 792 98.14 -67.70 REMARK 500 1 LYS A 804 117.37 -162.74 REMARK 500 1 LEU A 845 156.49 -46.42 REMARK 500 2 PHE A 784 -74.55 -57.29 REMARK 500 2 GLU A 805 133.68 -38.79 REMARK 500 2 GLN A 818 75.17 -119.63 REMARK 500 2 ASP A 840 29.84 40.61 REMARK 500 2 PRO A 846 -166.95 -75.03 REMARK 500 3 PHE A 784 -69.45 -101.76 REMARK 500 3 ASP A 792 96.71 -68.50 REMARK 500 3 GLU A 805 134.42 -39.16 REMARK 500 3 ASP A 840 29.92 40.47 REMARK 500 3 TYR A 844 49.45 -102.44 REMARK 500 3 LEU A 845 158.44 -49.99 REMARK 500 3 PRO A 846 -165.80 -74.96 REMARK 500 4 PHE A 784 -76.44 -51.44 REMARK 500 4 GLU A 805 136.32 -38.94 REMARK 500 4 LEU A 812 -50.50 -121.47 REMARK 500 4 GLN A 817 -29.89 -39.07 REMARK 500 5 PHE A 784 -75.47 -75.43 REMARK 500 5 GLU A 805 134.12 -38.95 REMARK 500 5 LEU A 845 160.05 -48.57 REMARK 500 6 ALA A 795 98.26 -64.25 REMARK 500 6 GLU A 805 137.29 -38.86 REMARK 500 6 GLN A 818 157.51 -46.50 REMARK 500 6 TYR A 826 17.27 55.79 REMARK 500 6 ASP A 840 29.96 40.44 REMARK 500 6 LEU A 845 163.97 -48.65 REMARK 500 7 PHE A 784 177.12 -48.22 REMARK 500 7 ASP A 792 96.74 -67.48 REMARK 500 7 LYS A 804 116.32 -160.28 REMARK 500 7 GLU A 805 137.25 -39.98 REMARK 500 7 ASP A 840 29.86 40.50 REMARK 500 7 GLU A 847 157.83 -45.41 REMARK 500 8 GLU A 805 133.16 -38.93 REMARK 500 8 ASP A 840 29.93 40.43 REMARK 500 8 TYR A 844 41.65 -87.23 REMARK 500 8 LEU A 845 153.53 -38.67 REMARK 500 9 ALA A 795 98.77 -61.33 REMARK 500 9 GLU A 805 137.77 -38.98 REMARK 500 9 LEU A 812 -51.26 -120.17 REMARK 500 9 ASP A 840 29.84 40.51 REMARK 500 9 LEU A 845 158.92 -44.94 REMARK 500 10 PRO A 781 -71.62 -74.97 REMARK 500 10 ASP A 792 96.68 -65.09 REMARK 500 10 GLU A 805 142.31 -39.29 REMARK 500 10 LYS A 815 -76.02 -41.52 REMARK 500 10 GLN A 818 37.36 71.62 REMARK 500 11 THR A 783 35.14 71.00 REMARK 500 11 GLU A 805 134.27 -38.85 REMARK 500 11 GLN A 817 -177.15 -69.10 REMARK 500 11 GLN A 818 31.05 -94.28 REMARK 500 11 TYR A 826 16.78 56.69 REMARK 500 11 ASP A 840 29.57 40.98 REMARK 500 12 GLU A 805 136.53 -38.91 REMARK 500 12 GLN A 817 172.88 -46.60 REMARK 500 12 GLN A 818 44.79 -86.94 REMARK 500 12 TYR A 826 16.93 56.07 REMARK 500 12 TYR A 844 46.56 -104.32 REMARK 500 12 LEU A 845 155.91 -41.66 REMARK 500 13 THR A 783 -68.63 -122.23 REMARK 500 13 GLU A 805 133.82 -38.79 REMARK 500 13 LEU A 812 -55.53 -132.53 REMARK 500 13 ASN A 813 -76.52 -83.64 REMARK 500 13 LYS A 814 65.85 69.11 REMARK 500 13 GLN A 817 154.77 -43.40 REMARK 500 13 ASP A 840 28.68 42.18 REMARK 500 13 TYR A 844 37.10 -89.18 REMARK 500 13 LEU A 845 163.39 -49.16 REMARK 500 14 GLU A 805 145.39 -39.63 REMARK 500 14 LYS A 815 -75.43 -58.82 REMARK 500 14 ASP A 840 29.21 41.64 REMARK 500 14 LEU A 845 161.03 -49.40 REMARK 500 15 THR A 783 130.31 -38.99 REMARK 500 15 GLU A 805 133.42 -38.86 REMARK 500 16 PRO A 781 -85.75 -75.03 REMARK 500 16 PHE A 784 -64.75 -124.00 REMARK 500 16 LYS A 815 99.18 -69.48 REMARK 500 16 TYR A 841 -174.24 -59.18 REMARK 500 16 LEU A 845 155.21 -48.94 REMARK 500 16 PRO A 846 -163.99 -75.02 REMARK 500 17 PRO A 781 -163.71 -74.99 REMARK 500 17 THR A 783 -60.68 -92.57 REMARK 500 17 GLU A 805 146.27 -39.70 REMARK 500 17 LYS A 815 92.32 -64.43 REMARK 500 17 SER A 842 -175.61 -56.85 REMARK 500 17 LEU A 845 162.87 -42.30 REMARK 500 18 PHE A 784 -175.30 -65.22 REMARK 500 18 GLU A 805 135.00 -38.91 REMARK 500 18 GLU A 847 154.65 -41.99 REMARK 500 19 THR A 783 52.17 -116.60 REMARK 500 19 ASP A 792 98.41 -68.20 REMARK 500 19 GLU A 805 135.30 -39.15 REMARK 500 19 ASP A 840 29.87 40.00 REMARK 500 19 TYR A 844 52.09 -108.06 REMARK 500 20 THR A 783 150.79 -48.83 REMARK 500 20 ARG A 796 -34.89 -38.94 REMARK 500 20 GLU A 805 136.63 -38.86 REMARK 500 20 LYS A 815 -173.15 -57.70 REMARK 500 20 GLN A 818 25.65 45.95 REMARK 500 20 ASP A 840 26.04 46.23 REMARK 500 20 TYR A 841 -175.71 -57.78 REMARK 500 20 LEU A 845 156.16 -43.25 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16053 RELATED DB: BMRB
DBREF 2KBT A 784 844 UNP P27870 VAV_MOUSE 784 844 DBREF 2KBT A 857 911 UNP P06654 SPG1_STRSG 228 282
SEQADV 2KBT GLY A 780 UNP P27870 EXPRESSION TAG SEQADV 2KBT PRO A 781 UNP P27870 EXPRESSION TAG SEQADV 2KBT GLY A 782 UNP P27870 EXPRESSION TAG SEQADV 2KBT THR A 783 UNP P27870 EXPRESSION TAG SEQADV 2KBT LEU A 845 UNP P27870 LINKER SEQADV 2KBT PRO A 846 UNP P27870 LINKER SEQADV 2KBT GLU A 847 UNP P27870 LINKER SEQADV 2KBT THR A 848 UNP P27870 LINKER SEQADV 2KBT GLY A 849 UNP P27870 LINKER SEQADV 2KBT GLY A 850 UNP P27870 LINKER SEQADV 2KBT GLY A 851 UNP P27870 LINKER SEQADV 2KBT SER A 852 UNP P27870 LINKER SEQADV 2KBT GLY A 853 UNP P27870 LINKER SEQADV 2KBT SER A 854 UNP P27870 LINKER SEQADV 2KBT SER A 855 UNP P27870 LINKER SEQADV 2KBT MET A 856 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 912 UNP P06654 EXPRESSION TAG SEQADV 2KBT SER A 913 UNP P06654 EXPRESSION TAG SEQADV 2KBT LEU A 914 UNP P06654 EXPRESSION TAG SEQADV 2KBT GLU A 915 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 916 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 917 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 918 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 919 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 920 UNP P06654 EXPRESSION TAG SEQADV 2KBT HIS A 921 UNP P06654 EXPRESSION TAG
SEQRES 1 A 142 GLY PRO GLY THR PHE GLY THR ALA LYS ALA ARG TYR ASP SEQRES 2 A 142 PHE CYS ALA ARG ASP ARG SER GLU LEU SER LEU LYS GLU SEQRES 3 A 142 GLY ASP ILE ILE LYS ILE LEU ASN LYS LYS GLY GLN GLN SEQRES 4 A 142 GLY TRP TRP ARG GLY GLU ILE TYR GLY ARG ILE GLY TRP SEQRES 5 A 142 PHE PRO SER ASN TYR VAL GLU GLU ASP TYR SER GLU TYR SEQRES 6 A 142 LEU PRO GLU THR GLY GLY GLY SER GLY SER SER MET THR SEQRES 7 A 142 TYR LYS LEU ILE LEU ASN GLY LYS THR LEU LYS GLY GLU SEQRES 8 A 142 THR THR THR GLU ALA VAL ASP ALA ALA THR ALA GLU LYS SEQRES 9 A 142 VAL PHE LYS GLN TYR ALA ASN ASP ASN GLY VAL ASP GLY SEQRES 10 A 142 GLU TRP THR TYR ASP ASP ALA THR LYS THR PHE THR VAL SEQRES 11 A 142 THR GLU HIS SER LEU GLU HIS HIS HIS HIS HIS HIS
SHEET 1 A 5 ARG A 828 PRO A 833 0 SHEET 2 A 5 TRP A 820 ILE A 825 -1 N TRP A 821 O PHE A 832 SHEET 3 A 5 ILE A 808 ASN A 813 -1 N LEU A 812 O ARG A 822 SHEET 4 A 5 THR A 786 ALA A 789 -1 N ALA A 787 O ILE A 809 SHEET 5 A 5 VAL A 837 GLU A 839 -1 O GLU A 838 N LYS A 788
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000