10 20 30 40 50 60 70 80 2KBG - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CELL ADHESION 28-NOV-08 2KBG
TITLE SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN TYPE-III MODULE TITLE 2 OF NCAM2
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL CELL ADHESION MOLECULE 2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIBRONECTIN TYPE-III DOMAIN 2; COMPND 5 SYNONYM: N-CAM 2; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCAM2; SOURCE 6 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: KM71H; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PPICZALPHC
KEYWDS CELL ADHESION MOLECULE, FIBRONECTIN TYPE III MODULE, NCAM2, KEYWDS 2 BETA-SHEET SANDWICH, CELL MEMBRANE, GLYCOPROTEIN, KEYWDS 3 IMMUNOGLOBULIN DOMAIN, MEMBRANE, PHOSPHOPROTEIN, KEYWDS 4 TRANSMEMBRANE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.K.RASMUSSEN,K.TEILUM,N.KULAHIN,O.CLAUSEN,V.BEREZIN,E.BOCK, AUTHOR 2 P.S.WALMOD,F.M.POULSEN
REVDAT 1 01-DEC-09 2KBG 0
JRNL AUTH K.K.RASMUSSEN,K.TEILUM,N.KULAHIN,O.CLAUSEN, JRNL AUTH 2 V.BEREZIN,E.BOCK,P.S.WALMOD,F.M.POULSEN JRNL TITL SOLUTION STRUCTURE OF THE SECOND FIBRONECTIN JRNL TITL 2 TYPE-III MODULE OF NCAM2 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.19 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KBG COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 03-DEC-08. REMARK 100 THE RCSB ID CODE IS RCSB100912.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM [U-13C; U-15N] FNIII2 REMARK 210 OF NCAM2, 20MM SODIUM REMARK 210 PHOSPHATE (PH 6.5), 0.02% REMARK 210 SODIUM AZIDE, 90% H2O, 10% REMARK 210 D2O, 90% H2O/10% D2O; 1.4MM [U REMARK 210 -13C; U-15N] FNIII2 OF NCAM2, REMARK 210 20MM SODIUM PHOSPHATE (PH 6.5) REMARK 210 , 0.02% SODIUM AZIDE, 100% REMARK 210 D2O, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HNCO; 3D HCACO; 3D REMARK 210 HN(CO)CA; 3D H(CCO)NH; 3D REMARK 210 C(CO)NH; 3D 1H-15N TOCSY; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.19, AUTOASSIGN REMARK 210 2.3.0, CYANA 2.1, NMRPIPE, REMARK 210 TALOS, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLU A -5 REMARK 465 ALA A -4 REMARK 465 GLU A -3 REMARK 465 ALA A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 HIS A 103 REMARK 465 HIS A 104 REMARK 465 HIS A 105 REMARK 465 HIS A 106 REMARK 465 HIS A 107 REMARK 465 HIS A 108
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 3 -164.17 -101.20 REMARK 500 1 PRO A 5 171.01 -59.96 REMARK 500 1 PRO A 6 164.75 -39.21 REMARK 500 1 SER A 7 48.97 -163.74 REMARK 500 1 SER A 13 -87.77 -58.12 REMARK 500 1 LYS A 24 105.56 -36.98 REMARK 500 1 GLU A 45 54.91 -114.77 REMARK 500 1 HIS A 59 152.93 179.80 REMARK 500 1 HIS A 64 62.39 71.04 REMARK 500 1 GLN A 66 152.22 -36.35 REMARK 500 1 ASN A 79 -164.92 -111.60 REMARK 500 1 GLU A 85 57.73 34.63 REMARK 500 1 PHE A 91 129.58 -171.52 REMARK 500 1 LYS A 96 131.47 -37.89 REMARK 500 1 ILE A 100 16.54 39.36 REMARK 500 1 LYS A 101 -72.81 -86.99 REMARK 500 2 GLU A 2 84.84 34.84 REMARK 500 2 PRO A 6 175.19 -39.79 REMARK 500 2 SER A 7 39.85 -160.11 REMARK 500 2 LYS A 24 105.46 -34.57 REMARK 500 2 ASP A 27 172.51 58.05 REMARK 500 2 GLU A 45 51.46 -149.03 REMARK 500 2 HIS A 64 70.70 79.42 REMARK 500 2 GLN A 66 140.98 -38.10 REMARK 500 2 ASN A 98 -75.46 -80.73 REMARK 500 2 ILE A 99 -48.43 -151.70 REMARK 500 2 ILE A 100 152.76 -44.88 REMARK 500 2 LYS A 101 175.74 -51.15 REMARK 500 3 GLU A 2 86.75 -25.41 REMARK 500 3 PRO A 3 -164.43 -101.93 REMARK 500 3 PRO A 5 162.76 -36.10 REMARK 500 3 PRO A 6 164.38 -37.38 REMARK 500 3 SER A 7 53.15 -152.57 REMARK 500 3 PRO A 12 104.63 -50.02 REMARK 500 3 LYS A 24 105.20 -47.16 REMARK 500 3 ASP A 26 -9.47 -51.16 REMARK 500 3 ASP A 27 131.54 64.83 REMARK 500 3 GLU A 45 16.21 -144.74 REMARK 500 3 HIS A 64 68.60 73.23 REMARK 500 3 GLN A 66 141.10 -36.16 REMARK 500 3 ASN A 79 -165.71 -119.07 REMARK 500 3 GLU A 85 98.03 -12.60 REMARK 500 3 LYS A 96 131.60 -39.71 REMARK 500 3 ASN A 98 -77.99 -117.88 REMARK 500 3 LYS A 101 167.81 73.90 REMARK 500 4 GLU A 2 92.13 -27.90 REMARK 500 4 PRO A 3 -164.02 -101.36 REMARK 500 4 PRO A 5 170.49 -38.50 REMARK 500 4 SER A 13 -173.57 -58.40 REMARK 500 4 LYS A 24 105.69 -44.62 REMARK 500 REMARK 500 THIS ENTRY HAS 268 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL
DBREF 2KBG A 1 102 UNP O15394 NCAM2_HUMAN 592 693
SEQADV 2KBG GLU A -5 UNP O15394 EXPRESSION TAG SEQADV 2KBG ALA A -4 UNP O15394 EXPRESSION TAG SEQADV 2KBG GLU A -3 UNP O15394 EXPRESSION TAG SEQADV 2KBG ALA A -2 UNP O15394 EXPRESSION TAG SEQADV 2KBG SER A -1 UNP O15394 EXPRESSION TAG SEQADV 2KBG MET A 0 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 103 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 104 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 105 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 106 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 107 UNP O15394 EXPRESSION TAG SEQADV 2KBG HIS A 108 UNP O15394 EXPRESSION TAG
SEQRES 1 A 114 GLU ALA GLU ALA SER MET ARG GLU PRO SER PRO PRO SER SEQRES 2 A 114 ILE HIS GLY GLN PRO SER SER GLY LYS SER PHE LYS LEU SEQRES 3 A 114 SER ILE THR LYS GLN ASP ASP GLY GLY ALA PRO ILE LEU SEQRES 4 A 114 GLU TYR ILE VAL LYS TYR ARG SER LYS ASP LYS GLU ASP SEQRES 5 A 114 GLN TRP LEU GLU LYS LYS VAL GLN GLY ASN LYS ASP HIS SEQRES 6 A 114 ILE ILE LEU GLU HIS LEU GLN TRP THR MET GLY TYR GLU SEQRES 7 A 114 VAL GLN ILE THR ALA ALA ASN ARG LEU GLY TYR SER GLU SEQRES 8 A 114 PRO THR VAL TYR GLU PHE SER MET PRO PRO LYS PRO ASN SEQRES 9 A 114 ILE ILE LYS ASP HIS HIS HIS HIS HIS HIS
SHEET 1 A 3 ILE A 8 HIS A 9 0 SHEET 2 A 3 PHE A 18 ILE A 22 -1 O SER A 21 N HIS A 9 SHEET 3 A 3 ILE A 60 LEU A 62 -1 O ILE A 60 N LEU A 20 SHEET 1 B 4 LEU A 49 GLN A 54 0 SHEET 2 B 4 GLU A 34 SER A 41 -1 N VAL A 37 O LYS A 51 SHEET 3 B 4 TYR A 71 ALA A 78 -1 O THR A 76 N ILE A 36 SHEET 4 B 4 SER A 84 PHE A 91 -1 O TYR A 89 N VAL A 73
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000