2KBD - Header Asymmetric Unit

HEADER DNA 07-DEC-98 2KBD

TITLE 5'-D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3', TITLE 2 5'-D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3'

COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA (5'- COMPND 3 D(*CP*TP*GP*GP*GP*GP*AP*CP*TP*TP*TP*CP*CP*AP*GP*G)-3'); COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'- COMPND 8 D(*CP*CP*TP*GP*GP*AP*AP*AP*GP*TP*CP*CP*CP*CP*AP*G)-3'); COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES

SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 SYNTHETIC: YES

KEYWDS NMR, DNA STRUCTURE, MODELLING, DEOXYRIBONUCLEIC ACID

EXPDTA SOLUTION NMR

NUMMDL 3

AUTHOR C.TISNE,E.HANTZ,B.HARTMANN,M.DELEPIERRE

REVDAT 5 24-FEB-09 2KBD 1 VERSN REVDAT 4 01-APR-03 2KBD 1 JRNL REVDAT 3 29-DEC-99 2KBD 4 HEADER COMPND REMARK JRNL REVDAT 3 2 4 ATOM SOURCE SEQRES REVDAT 2 23-DEC-98 2KBD 1 HEADER REMARK SEQRES REVDAT 1 09-DEC-98 2KBD 0

JRNL AUTH C.TISNE,E.HANTZ,B.HARTMANN,M.DELEPIERRE JRNL TITL SOLUTION STRUCTURE OF A NON-PALINDROMIC 16 JRNL TITL 2 BASE-PAIR DNA RELATED TO THE HIV-1 KAPPA B SITE: JRNL TITL 3 EVIDENCE FOR BI-BII EQUILIBRIUM INDUCING A GLOBAL JRNL TITL 4 DYNAMIC CURVATURE OF THE DUPLEX. JRNL REF J.MOL.BIOL. V. 279 127 1998 JRNL REFN ISSN 0022-2836 JRNL PMID 9636705 JRNL DOI 10.1006/JMBI.1998.1757

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : IRMA REMARK 3 AUTHORS : BOELENS ET AL. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL

REMARK 4 REMARK 4 2KBD COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-DEC-98. REMARK 100 THE RCSB ID CODE IS RCSB000236.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308.0 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : JUMNA REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 3 REMARK 210 CONFORMERS, SELECTION CRITERIA : ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-3 REMARK 470 RES CSSEQI ATOMS REMARK 470 DC A 1 O5' REMARK 470 DC B 17 O5'

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 1 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG A 6 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DA A 7 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DC A 8 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DT A 9 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DT A 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC A 12 O4' - C1' - N1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 DC A 13 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DA A 14 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG A 15 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DG A 16 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 1 DC B 17 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DT B 19 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DG B 20 O4' - C1' - N9 ANGL. DEV. = 3.3 DEGREES REMARK 500 1 DG B 21 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DA B 22 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 1 DA B 23 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 1 DA B 24 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DG B 25 O4' - C1' - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 DT B 26 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 1 DC B 27 O4' - C1' - N1 ANGL. DEV. = 3.4 DEGREES REMARK 500 1 DC B 28 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DC B 29 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 1 DC B 30 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DA B 31 O4' - C1' - N9 ANGL. DEV. = 2.9 DEGREES REMARK 500 1 DG B 32 O4' - C1' - N9 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DC A 1 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DT A 2 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DG A 3 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DG A 4 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DG A 5 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DG A 6 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DA A 7 O4' - C1' - N9 ANGL. DEV. = 3.1 DEGREES REMARK 500 2 DC A 8 O4' - C1' - N1 ANGL. DEV. = 3.2 DEGREES REMARK 500 2 DT A 9 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 2 DT A 10 O4' - C1' - N1 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DT A 11 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 2 DC A 12 O4' - C1' - N1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 DC A 13 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 2 DA A 14 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 2 DG A 15 O4' - C1' - N9 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DG A 16 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 2 DC B 17 O4' - C1' - N1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 DC B 18 O4' - C1' - N1 ANGL. DEV. = 2.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 97 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL

DBREF 2KBD A 1 16 PDB 2KBD 2KBD 1 16 DBREF 2KBD B 17 32 PDB 2KBD 2KBD 17 32

SEQRES 1 A 16 DC DT DG DG DG DG DA DC DT DT DT DC DC SEQRES 2 A 16 DA DG DG SEQRES 1 B 16 DC DC DT DG DG DA DA DA DG DT DC DC DC SEQRES 2 B 16 DC DA DG

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000