10 20 30 40 50 60 70 80 2KB9 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 24-NOV-08 2KB9
TITLE HUMAN JAGGED-1, EXON 6
COMPND MOL_ID: 1; COMPND 2 MOLECULE: JAGGED-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 252-295; COMPND 5 SYNONYM: JAGGED1, HJ1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PROTEIN IS NATURALLY FOUND IN HOMO SOURCE 4 SAPIENS (HUMAN). THE PROTEIN INCLUDES THE C-TERMINAL PART SOURCE 5 OF THE EGF1 DOMAIN AND THE ENTIRE EGF2 DOMAIN.
KEYWDS NOTCH SIGNALING, EGF, CALCIUM, DEVELOPMENTAL PROTEIN, KEYWDS 2 DISEASE MUTATION, EGF-LIKE DOMAIN, GLYCOPROTEIN, MEMBRANE, KEYWDS 3 NOTCH SIGNALING PATHWAY, POLYMORPHISM, TRANSMEMBRANE, KEYWDS 4 PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.PINTAR,C.GUARNACCIA,S.PONGOR
REVDAT 1 28-JUL-09 2KB9 0
JRNL AUTH A.PINTAR,C.GUARNACCIA,S.DHIR,S.PONGOR JRNL TITL EXON 6 OF HUMAN JAG1 ENCODES A CONSERVED STRUCTURAL JRNL TITL 2 UNIT JRNL REF BMC STRUCT.BIOL. V. 9 43 2009 JRNL REFN ESSN 1472-6807 JRNL PMID 19586525 JRNL DOI 10.1186/1472-6807-9-43
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.GUARNACCIA,A.PINTAR,S.PONGOR REMARK 1 TITL EXON 6 OF HUMAN JAGGED-1 ENCODES AN AUTONOMOUSLY REMARK 1 TITL 2 FOLDING UNIT REMARK 1 REF FEBS LETT. V. 574 156 2004 REMARK 1 REFN ISSN 0014-5793
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT P. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KB9 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB100906.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM PROTEIN, 90% H2O/10% REMARK 210 D2O; 0.5 MM PROTEIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H COSY; 2D 1H-1H REMARK 210 TOCSY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 143.09 -174.84 REMARK 500 1 GLN A 3 -42.29 -166.44 REMARK 500 1 TYR A 10 -74.18 -135.89 REMARK 500 1 CYS A 11 89.25 -179.25 REMARK 500 1 ASP A 12 47.14 -162.53 REMARK 500 1 ILE A 15 77.40 51.80 REMARK 500 1 PRO A 18 83.23 -69.76 REMARK 500 1 TRP A 29 69.76 60.97 REMARK 500 1 CYS A 42 72.90 57.33 REMARK 500 2 GLN A 3 -46.76 -141.99 REMARK 500 2 TYR A 10 -63.78 -153.30 REMARK 500 2 CYS A 11 108.60 -174.79 REMARK 500 2 ASP A 12 -36.14 -177.44 REMARK 500 2 ILE A 15 77.55 53.79 REMARK 500 2 PRO A 18 82.63 -69.73 REMARK 500 2 TRP A 29 85.03 63.23 REMARK 500 3 CYS A 2 78.46 56.67 REMARK 500 3 GLN A 3 -43.37 -165.46 REMARK 500 3 TYR A 10 -70.32 -154.00 REMARK 500 3 CYS A 11 117.79 -178.69 REMARK 500 3 ASP A 12 -40.34 -165.54 REMARK 500 3 ILE A 15 77.43 52.33 REMARK 500 3 PRO A 18 83.22 -69.78 REMARK 500 3 TRP A 29 68.88 61.42 REMARK 500 4 CYS A 11 86.65 52.69 REMARK 500 4 ASP A 12 45.47 -143.30 REMARK 500 4 LYS A 13 127.28 -171.94 REMARK 500 4 ILE A 15 77.39 51.78 REMARK 500 4 PRO A 18 82.89 -69.79 REMARK 500 4 TRP A 29 79.63 59.99 REMARK 500 5 GLN A 3 -74.50 -130.52 REMARK 500 5 ILE A 15 77.38 52.25 REMARK 500 5 PRO A 18 83.14 -69.74 REMARK 500 5 TRP A 29 80.65 60.01 REMARK 500 6 CYS A 2 75.46 -116.78 REMARK 500 6 TRP A 6 85.39 -151.61 REMARK 500 6 CYS A 11 88.87 56.60 REMARK 500 6 ASP A 12 26.56 -151.31 REMARK 500 6 ILE A 15 77.51 51.79 REMARK 500 6 PRO A 18 82.59 -69.74 REMARK 500 6 TRP A 29 71.08 61.82 REMARK 500 7 TYR A 4 96.26 -174.96 REMARK 500 7 CYS A 11 69.70 63.07 REMARK 500 7 ILE A 15 77.48 53.24 REMARK 500 7 PRO A 18 82.30 -69.74 REMARK 500 7 CYS A 25 144.06 -170.74 REMARK 500 7 TRP A 29 71.43 63.16 REMARK 500 8 TRP A 6 65.59 -153.19 REMARK 500 8 CYS A 11 72.35 52.08 REMARK 500 8 ILE A 15 77.41 51.66 REMARK 500 8 PRO A 18 83.01 -69.73 REMARK 500 8 VAL A 21 -45.68 -132.41 REMARK 500 8 CYS A 42 69.17 63.21 REMARK 500 9 GLN A 3 -58.18 -172.26 REMARK 500 9 LEU A 9 -60.21 -100.49 REMARK 500 9 CYS A 11 88.29 51.97 REMARK 500 9 ASP A 12 27.26 -155.56 REMARK 500 9 ILE A 15 77.43 52.19 REMARK 500 9 PRO A 18 83.21 -69.78 REMARK 500 9 TRP A 29 72.47 62.15 REMARK 500 9 CYS A 42 89.40 58.24 REMARK 500 10 GLN A 3 29.34 -161.88 REMARK 500 10 TYR A 4 114.26 -174.14 REMARK 500 10 TYR A 10 -54.13 -155.43 REMARK 500 10 CYS A 11 107.07 -167.30 REMARK 500 10 ASP A 12 -38.95 -175.01 REMARK 500 10 ILE A 15 77.39 51.82 REMARK 500 10 PRO A 18 83.45 -69.84 REMARK 500 10 TRP A 37 -179.16 -64.73 REMARK 500 10 CYS A 42 95.25 58.40 REMARK 500 11 GLN A 3 -36.61 -175.48 REMARK 500 11 CYS A 11 47.50 -92.04 REMARK 500 11 ILE A 15 77.50 51.75 REMARK 500 11 PRO A 18 83.24 -69.71 REMARK 500 11 CYS A 20 -173.90 -176.55 REMARK 500 11 VAL A 21 -52.72 -128.50 REMARK 500 11 TRP A 29 60.72 63.06 REMARK 500 11 CYS A 42 72.09 52.80 REMARK 500 12 GLN A 3 -40.43 -161.98 REMARK 500 12 ILE A 15 77.35 51.70 REMARK 500 12 PRO A 18 83.17 -69.72 REMARK 500 12 CYS A 20 -170.09 -179.47 REMARK 500 12 VAL A 21 -48.64 -135.34 REMARK 500 12 TRP A 37 -56.58 -136.98 REMARK 500 13 GLN A 3 -62.98 -148.98 REMARK 500 13 TYR A 10 -67.46 -152.49 REMARK 500 13 CYS A 11 104.24 -172.75 REMARK 500 13 ASP A 12 -37.09 -175.34 REMARK 500 13 ILE A 15 77.57 51.70 REMARK 500 13 PRO A 18 83.05 -69.81 REMARK 500 13 CYS A 20 -177.51 -176.87 REMARK 500 13 VAL A 21 -53.82 -123.24 REMARK 500 14 CYS A 2 71.20 -164.23 REMARK 500 14 TYR A 4 99.36 60.25 REMARK 500 14 ASP A 12 -35.02 -179.23 REMARK 500 14 ILE A 15 77.00 54.25 REMARK 500 14 PRO A 18 83.19 -69.78 REMARK 500 15 GLN A 3 -177.64 -178.71 REMARK 500 15 CYS A 11 83.18 61.62 REMARK 500 15 ASP A 12 33.49 -163.39 REMARK 500 15 ILE A 15 77.51 51.88 REMARK 500 15 PRO A 18 82.92 -69.77 REMARK 500 15 CYS A 20 -174.21 -176.58 REMARK 500 15 VAL A 21 -49.76 -131.39 REMARK 500 15 TRP A 29 74.87 63.09 REMARK 500 16 GLN A 3 -59.06 -170.75 REMARK 500 16 ILE A 15 77.44 51.63 REMARK 500 16 PRO A 18 83.01 -69.76 REMARK 500 16 CYS A 20 -173.17 -179.42 REMARK 500 16 VAL A 21 -60.52 -125.51 REMARK 500 16 TRP A 29 68.35 62.58 REMARK 500 16 TRP A 37 -62.01 -139.31 REMARK 500 17 GLN A 3 51.11 -149.02 REMARK 500 17 TYR A 10 -73.91 -140.99 REMARK 500 17 CYS A 11 113.02 -174.17 REMARK 500 17 ASP A 12 -35.83 -177.47 REMARK 500 17 ILE A 15 77.54 53.60 REMARK 500 17 PRO A 18 83.10 -69.73 REMARK 500 17 VAL A 21 -67.11 -128.29 REMARK 500 17 CYS A 25 146.33 -174.28 REMARK 500 17 TRP A 29 80.80 63.45 REMARK 500 17 CYS A 42 70.49 52.55 REMARK 500 18 GLN A 3 41.50 -174.92 REMARK 500 18 TYR A 4 105.97 -172.19 REMARK 500 18 TYR A 10 -70.71 -147.41 REMARK 500 18 CYS A 11 111.57 -166.87 REMARK 500 18 ASP A 12 -35.42 -178.51 REMARK 500 18 ILE A 15 77.28 53.95 REMARK 500 18 PRO A 18 83.18 -69.71 REMARK 500 18 VAL A 21 -56.46 -129.88 REMARK 500 18 CYS A 25 147.85 -171.10 REMARK 500 18 TRP A 29 77.46 63.27 REMARK 500 18 TRP A 37 -70.46 -72.96 REMARK 500 19 GLN A 3 57.47 -143.04 REMARK 500 19 TYR A 4 110.47 -169.49 REMARK 500 19 TRP A 6 83.08 -154.47 REMARK 500 19 LEU A 9 -53.81 -129.05 REMARK 500 19 ILE A 15 77.31 53.63 REMARK 500 19 PRO A 18 83.25 -69.78 REMARK 500 19 VAL A 21 -54.95 -134.04 REMARK 500 19 CYS A 25 145.30 -173.63 REMARK 500 19 TRP A 29 80.52 63.25 REMARK 500 19 CYS A 31 99.92 -160.39 REMARK 500 20 ILE A 15 77.00 54.10 REMARK 500 20 PRO A 18 79.12 -69.79 REMARK 500 20 CYS A 25 145.73 -170.35 REMARK 500 20 TRP A 29 83.55 63.51 REMARK 500 20 CYS A 33 -176.96 -174.04 REMARK 500 20 CYS A 42 86.97 51.80 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VJ2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DSL/EGF1/EGF2/EGF3
DBREF 2KB9 A 1 44 UNP P78504 JAG1_HUMAN 252 295
SEQRES 1 A 44 ARG CYS GLN TYR GLY TRP GLN GLY LEU TYR CYS ASP LYS SEQRES 2 A 44 CYS ILE PRO HIS PRO GLY CYS VAL HIS GLY ILE CYS ASN SEQRES 3 A 44 GLU PRO TRP GLN CYS LEU CYS GLU THR ASN TRP GLY GLY SEQRES 4 A 44 GLN LEU CYS ASP LYS
SSBOND 1 CYS A 2 CYS A 11 1555 1555 2.10 SSBOND 2 CYS A 14 CYS A 25 1555 1555 2.00 SSBOND 3 CYS A 20 CYS A 31 1555 1555 2.03 SSBOND 4 CYS A 33 CYS A 42 1555 1555 2.06
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000