10 20 30 40 50 60 70 80 2KAA - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TOXIN 04-NOV-08 2KAA
TITLE SOLUTION STRUCTURE OF HIRSUTELLIN A FROM HIRSUTELLA TITLE 2 THOMPSONII
CAVEAT 2KAA CHIRALITY ERROR AT CA CENTER OF ALL GLY RESIDUES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIRSUTELLIN A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-130 (UNP RESIDUES 35-164); COMPND 5 SYNONYM: HTA
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HIRSUTELLA THOMPSONII; SOURCE 3 ORGANISM_TAXID: 42368
KEYWDS RIBOTOXIN, HIRSUTELLIN A, RIP, ALPHA-SARCIN, HIRSUTELLA KEYWDS 2 THOMPSONII
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR A.VIEGAS,A.L.MACEDO,M.BRUIX
REVDAT 1 03-NOV-09 2KAA 0
JRNL AUTH A.VIEGAS,E.HERRERO-GALAN,M.ONADERRA,A.L.MACEDO, JRNL AUTH 2 M.BRUIX JRNL TITL SOLUTION STRUCTURE OF HIRSUTELLIN A--NEW INSIGHTS JRNL TITL 2 INTO THE ACTIVE SITE AND INTERACTING INTERFACES OF JRNL TITL 3 RIBOTOXINS. JRNL REF FEBS J. V. 276 2381 2009 JRNL REFN ISSN 1742-464X JRNL PMID 19348010
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1, AMBER 7 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER, WUTHRICH (CYANA), CASE, REMARK 3 DARDEN, CHEATHAM III, SIMMERLING, WANG, DUKE, REMARK 3 LUO, KOLLM (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KAA COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB100873.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 4.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.7 MM HTA, 90% H2O/10% D2O; REMARK 210 0.7 MM HTA, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-1H REMARK 210 TOCSY; 2D DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.114, CYANA 2.1, REMARK 210 TOPSPIN 1.3 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 MOLECULAR DYNAMICS, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ1 LYS A 115 OD1 ASP A 117 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 4 CYS A 6 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 8 ASP A 117 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 10 TYR A 67 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 11 ASP A 40 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 18 VAL A 4 CA - CB - CG2 ANGL. DEV. = 9.7 DEGREES REMARK 500 20 ASP A 117 CB - CG - OD1 ANGL. DEV. = -7.8 DEGREES REMARK 500 20 ASP A 117 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 7 56.97 -112.49 REMARK 500 1 LEU A 10 -80.50 -85.22 REMARK 500 1 SER A 38 -64.98 -131.54 REMARK 500 1 ALA A 46 100.29 -34.23 REMARK 500 1 ASP A 61 32.26 -78.36 REMARK 500 1 TRP A 71 -179.40 -56.79 REMARK 500 1 ASP A 81 46.73 -90.40 REMARK 500 1 SER A 101 42.79 33.48 REMARK 500 1 TYR A 107 58.42 31.86 REMARK 500 1 VAL A 116 74.79 -107.33 REMARK 500 1 ASP A 117 -75.71 -58.00 REMARK 500 1 LYS A 118 -44.50 -133.41 REMARK 500 1 GLN A 121 -73.01 -60.49 REMARK 500 1 PHE A 125 175.77 -52.72 REMARK 500 2 LEU A 10 -78.17 -95.36 REMARK 500 2 PRO A 16 97.76 -66.51 REMARK 500 2 SER A 38 -67.67 -136.83 REMARK 500 2 ALA A 46 101.20 -43.93 REMARK 500 2 TRP A 71 175.80 -57.16 REMARK 500 2 ASP A 81 47.05 -99.96 REMARK 500 2 GLN A 87 103.12 -39.41 REMARK 500 2 TYR A 107 58.13 37.23 REMARK 500 2 ASP A 117 -75.77 -59.55 REMARK 500 2 LYS A 118 -45.92 -135.05 REMARK 500 3 ARG A 7 43.21 -108.97 REMARK 500 3 LEU A 10 -88.00 -99.14 REMARK 500 3 SER A 38 -56.02 -131.92 REMARK 500 3 ASP A 61 30.13 -98.07 REMARK 500 3 ILE A 69 144.01 -170.46 REMARK 500 3 LYS A 80 -65.21 -94.69 REMARK 500 3 ASP A 81 36.67 -85.62 REMARK 500 3 GLN A 87 112.54 -38.61 REMARK 500 3 LYS A 88 76.83 -100.83 REMARK 500 3 TYR A 107 60.43 38.75 REMARK 500 3 ASP A 117 -77.75 -105.86 REMARK 500 3 LYS A 123 -60.62 -137.13 REMARK 500 3 GLU A 124 172.66 -57.24 REMARK 500 4 PRO A 8 -178.48 -69.88 REMARK 500 4 LEU A 10 -83.03 -110.95 REMARK 500 4 GLU A 14 97.44 -55.86 REMARK 500 4 LYS A 37 -52.17 -128.45 REMARK 500 4 ALA A 46 102.80 -49.96 REMARK 500 4 ASP A 48 4.50 -66.61 REMARK 500 4 HIS A 49 42.35 73.37 REMARK 500 4 ASP A 58 32.10 -79.61 REMARK 500 4 TRP A 71 174.41 -56.22 REMARK 500 4 ALA A 76 173.26 -57.75 REMARK 500 4 GLN A 87 102.95 -37.57 REMARK 500 4 VAL A 105 118.60 -38.13 REMARK 500 4 ASP A 117 -80.18 -92.46 REMARK 500 REMARK 500 THIS ENTRY HAS 292 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 107 0.07 SIDE CHAIN REMARK 500 4 TYR A 44 0.07 SIDE CHAIN REMARK 500 4 TYR A 67 0.07 SIDE CHAIN REMARK 500 4 TYR A 70 0.07 SIDE CHAIN REMARK 500 8 TYR A 44 0.07 SIDE CHAIN REMARK 500 13 TYR A 44 0.07 SIDE CHAIN REMARK 500 17 TYR A 44 0.08 SIDE CHAIN REMARK 500 17 TYR A 67 0.07 SIDE CHAIN REMARK 500 20 TYR A 70 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 16018 RELATED DB: BMRB
DBREF 2KAA A 1 130 UNP P78696 P78696_HIRTH 35 164
SEQRES 1 A 130 ALA PRO ILE VAL THR CYS ARG PRO LYS LEU ASP GLY ARG SEQRES 2 A 130 GLU LYS PRO PHE LYS VAL ASP VAL ALA THR ALA GLN ALA SEQRES 3 A 130 GLN ALA ARG LYS ALA GLY LEU THR THR GLY LYS SER GLY SEQRES 4 A 130 ASP PRO HIS ARG TYR PHE ALA GLY ASP HIS ILE ARG TRP SEQRES 5 A 130 GLY VAL ASN ASN CYS ASP LYS ALA ASP ALA ILE LEU TRP SEQRES 6 A 130 GLU TYR PRO ILE TYR TRP VAL GLY LYS ASN ALA GLU TRP SEQRES 7 A 130 ALA LYS ASP VAL LYS THR SER GLN GLN LYS GLY GLY PRO SEQRES 8 A 130 THR PRO ILE ARG VAL VAL TYR ALA ASN SER ARG GLY ALA SEQRES 9 A 130 VAL GLN TYR CYS GLY VAL MET THR HIS SER LYS VAL ASP SEQRES 10 A 130 LYS ASN ASN GLN GLY LYS GLU PHE PHE GLU LYS CYS ASP
HELIX 1 1 VAL A 21 GLY A 32 1 12 HELIX 2 2 VAL A 54 LYS A 59 1 6
SHEET 1 A 2 ILE A 3 CYS A 6 0 SHEET 2 A 2 PHE A 17 ASP A 20 -1 O VAL A 19 N VAL A 4 SHEET 1 B 5 HIS A 42 TYR A 44 0 SHEET 2 B 5 LEU A 64 PRO A 68 -1 O LEU A 64 N TYR A 44 SHEET 3 B 5 ARG A 95 ALA A 99 -1 O VAL A 96 N TYR A 67 SHEET 4 B 5 GLY A 109 HIS A 113 -1 O GLY A 109 N VAL A 97 SHEET 5 B 5 PHE A 126 LYS A 128 -1 O GLU A 127 N THR A 112
SSBOND 1 CYS A 6 CYS A 129 1555 1555 2.03 SSBOND 2 CYS A 57 CYS A 108 1555 1555 2.01
CISPEP 1 ASP A 40 PRO A 41 1 -4.61 CISPEP 2 ASP A 40 PRO A 41 2 -0.59 CISPEP 3 ASP A 40 PRO A 41 3 -6.10 CISPEP 4 ASP A 40 PRO A 41 4 -14.82 CISPEP 5 ASP A 40 PRO A 41 5 0.56 CISPEP 6 ASP A 40 PRO A 41 6 -5.26 CISPEP 7 ASP A 40 PRO A 41 7 -2.32 CISPEP 8 ASP A 40 PRO A 41 8 -9.06 CISPEP 9 ASP A 40 PRO A 41 9 -1.69 CISPEP 10 ASP A 40 PRO A 41 10 0.76 CISPEP 11 ASP A 40 PRO A 41 11 -5.20 CISPEP 12 ASP A 40 PRO A 41 12 -5.95 CISPEP 13 ASP A 40 PRO A 41 13 -6.78 CISPEP 14 ASP A 40 PRO A 41 14 -3.21 CISPEP 15 ASP A 40 PRO A 41 15 -3.44 CISPEP 16 ASP A 40 PRO A 41 16 -5.89 CISPEP 17 ASP A 40 PRO A 41 17 -9.17 CISPEP 18 ASP A 40 PRO A 41 18 -3.23 CISPEP 19 ASP A 40 PRO A 41 19 -8.33 CISPEP 20 ASP A 40 PRO A 41 20 -8.41
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000