10 20 30 40 50 60 70 80 2KA1 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER MEMBRANE PROTEIN 30-OCT-08 2KA1
TITLE SOLUTION NMR STRUCTURE OF BNIP3 TRANSMEMBRANE PEPTIDE DIMER TITLE 2 IN DETERGENT MICELLES
COMPND MOL_ID: 1; COMPND 2 MOLECULE: BCL2/ADENOVIRUS E1B 19 KDA PROTEIN-INTERACTING COMPND 3 PROTEIN 3; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: TRANSMEMBRANE DOMAIN, RESIDUES 154-188; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BNIP3, NIP3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET3A
KEYWDS INTEGRAL MEMBRANE PROTEIN, MEMBRANE HELIX-HELIX KEYWDS 2 INTERACTIONS, BNIP3, TRANSMEMBRANE DOMAIN, HOMODIMER, KEYWDS 3 MEMBRANE PROTEIN FOLDING, APOPTOSIS, HOST-VIRUS KEYWDS 4 INTERACTION, MITOCHONDRION, PHOSPHOPROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR E.S.SULISTIJO,K.R.MACKENZIE
REVDAT 1 23-JUN-09 2KA1 0
JRNL AUTH E.S.SULISTIJO,K.R.MACKENZIE JRNL TITL STRUCTURAL BASIS FOR DIMERIZATION OF THE BNIP3 JRNL TITL 2 TRANSMEMBRANE DOMAIN JRNL REF BIOCHEMISTRY V. 48 5106 2009 JRNL REFN ISSN 0006-2960 JRNL PMID 19415897 JRNL DOI 10.1021/BI802245U
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2KA1 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-NOV-08. REMARK 100 THE RCSB ID CODE IS RCSB100864.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 313 REMARK 210 PH : 5.1 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.4 MM [U-100% 13C; U-100% REMARK 210 15N] BCL2/ADENOVIRUS E1B 19 REMARK 210 KDA PROTEIN-INTERACTING REMARK 210 PROTEIN 3, 0.6 MM BCL2/ REMARK 210 ADENOVIRUS E1B 19 KDA PROTEIN- REMARK 210 INTERACTING PROTEIN 3, 90% REMARK 210 H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D CN-NOESY-HSQC; 3D 15N- REMARK 210 EDITED NOESY-HSQC; 3D 13C- REMARK 210 EDITED NOESY-HSQC OPTIMIZED REMARK 210 FOR AROMATIC CARBON; HALF- REMARK 210 FILTERED 3D CN-NOESY-HSQC; 2D REMARK 210 SPIN-ECHO DIFFERENCE CT HSQC; REMARK 210 HNHA; HNCA; CBCACONNH; HNCO; REMARK 210 H(C)CH-COSY; (H)CCH-TOCSY; REMARK 210 HBCBCGCDHD; HBCBCGCDCEHE REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, NMRPIPE, SPARKY, REMARK 210 VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 158 -87.68 50.48 REMARK 500 1 ARG A 186 46.23 -105.05 REMARK 500 1 PHE B 157 -71.98 -77.37 REMARK 500 1 SER B 158 -84.20 59.73 REMARK 500 2 PHE A 157 -85.78 -76.51 REMARK 500 2 SER A 158 -90.06 36.09 REMARK 500 2 PHE A 165 -52.97 -135.32 REMARK 500 2 SER B 158 -90.29 47.95 REMARK 500 2 PHE B 165 -56.20 -123.14 REMARK 500 3 PHE A 157 -75.28 -77.13 REMARK 500 3 SER A 158 -88.00 46.62 REMARK 500 3 PHE A 165 -56.48 -136.74 REMARK 500 3 ARG A 186 50.50 -113.02 REMARK 500 3 PHE B 157 -78.53 -75.60 REMARK 500 3 SER B 158 -75.68 67.07 REMARK 500 3 PHE B 165 -45.84 -146.86 REMARK 500 4 SER A 158 -89.88 44.38 REMARK 500 4 PHE A 165 -64.36 -102.50 REMARK 500 4 SER B 158 -90.80 46.05 REMARK 500 5 PHE A 157 -74.72 -76.58 REMARK 500 5 SER A 158 -84.27 60.90 REMARK 500 5 PHE A 165 -52.76 -131.63 REMARK 500 5 PHE B 165 -45.07 -146.71 REMARK 500 6 SER A 158 -86.37 50.77 REMARK 500 6 PHE A 165 -45.28 -139.59 REMARK 500 6 ARG A 186 36.73 -96.48 REMARK 500 6 SER B 158 -92.43 40.92 REMARK 500 6 PHE B 165 -58.99 -135.95 REMARK 500 7 SER A 158 -86.35 52.95 REMARK 500 7 PHE A 165 -43.71 -132.75 REMARK 500 7 SER B 158 -91.90 44.26 REMARK 500 7 PHE B 165 -43.39 -137.00 REMARK 500 8 PHE A 157 -84.13 -76.79 REMARK 500 8 SER A 158 -158.03 71.44 REMARK 500 8 PHE A 165 -62.23 -136.40 REMARK 500 8 SER B 158 -85.83 55.31 REMARK 500 8 PHE B 165 -49.46 -148.18 REMARK 500 8 LEU B 187 -67.50 -102.14 REMARK 500 9 PHE A 157 -71.91 -76.53 REMARK 500 9 SER A 158 -82.46 56.17 REMARK 500 9 PHE A 165 -60.66 -142.90 REMARK 500 9 ARG A 186 44.78 -101.15 REMARK 500 9 PHE B 157 -57.27 -157.85 REMARK 500 9 SER B 158 -90.75 38.47 REMARK 500 10 SER A 158 -90.39 43.66 REMARK 500 10 PHE A 165 -50.94 -142.47 REMARK 500 10 SER B 158 -90.35 47.31 REMARK 500 11 PHE A 157 -73.25 -75.96 REMARK 500 11 SER A 158 -89.64 43.01 REMARK 500 11 PHE A 165 -45.37 -148.57 REMARK 500 11 PHE B 157 -79.25 -77.14 REMARK 500 11 SER B 158 134.54 61.06 REMARK 500 11 ALA B 159 -63.78 89.81 REMARK 500 11 PHE B 165 -50.19 -145.66 REMARK 500 12 PHE A 157 -74.09 -76.86 REMARK 500 12 SER A 158 -88.11 48.40 REMARK 500 12 ARG A 186 50.20 -112.87 REMARK 500 12 LEU A 187 -68.47 -95.53 REMARK 500 12 SER B 158 -89.90 42.29 REMARK 500 12 PHE B 165 -54.90 -145.94 REMARK 500 13 PHE A 157 -76.73 -76.83 REMARK 500 13 SER A 158 -78.96 63.59 REMARK 500 13 SER B 158 -163.60 78.51 REMARK 500 13 PHE B 165 -46.49 -139.74 REMARK 500 14 SER A 158 -89.76 40.45 REMARK 500 14 PHE A 165 -49.03 -142.55 REMARK 500 14 ARG A 186 37.68 -96.01 REMARK 500 14 SER B 158 -100.34 -75.45 REMARK 500 14 GLU B 160 -76.39 -53.27 REMARK 500 14 PHE B 165 -46.21 -132.28 REMARK 500 15 PHE A 157 -50.21 -156.44 REMARK 500 15 SER A 158 -87.91 49.89 REMARK 500 15 PHE A 165 -51.94 -140.98 REMARK 500 15 SER B 158 -92.47 41.32 REMARK 500 15 PHE B 165 -52.28 -122.69 REMARK 500 16 SER A 158 -91.72 43.55 REMARK 500 16 PHE A 165 -44.93 -156.66 REMARK 500 16 ARG A 186 37.36 -99.11 REMARK 500 16 PHE B 157 -84.15 -77.04 REMARK 500 16 ALA B 159 -62.67 -179.67 REMARK 500 16 PHE B 165 -48.03 -146.63 REMARK 500 17 SER A 158 -87.70 51.44 REMARK 500 17 PHE A 165 -60.57 -135.14 REMARK 500 17 SER B 158 -90.88 45.07 REMARK 500 17 PHE B 165 -55.97 -128.98 REMARK 500 18 PHE A 157 -79.69 -76.74 REMARK 500 18 SER A 158 -76.21 63.70 REMARK 500 18 PHE A 165 -50.19 -148.02 REMARK 500 18 ARG A 186 48.81 -105.73 REMARK 500 18 SER B 158 -90.18 43.92 REMARK 500 18 PHE B 165 -53.76 -133.88 REMARK 500 19 PHE A 157 -73.91 -77.22 REMARK 500 19 SER A 158 -90.62 38.46 REMARK 500 19 PHE A 165 -48.28 -147.24 REMARK 500 19 ARG A 186 41.73 -95.13 REMARK 500 19 SER B 158 -163.49 73.84 REMARK 500 19 VAL B 164 31.95 -96.41 REMARK 500 19 PHE B 165 -46.85 -144.88 REMARK 500 20 SER A 158 -62.66 -167.77 REMARK 500 20 ALA A 159 -53.13 179.01 REMARK 500 20 PHE A 165 -65.46 -138.01 REMARK 500 20 ARG A 186 38.31 -92.79 REMARK 500 20 PHE B 157 -71.70 -76.91 REMARK 500 20 SER B 158 -90.38 44.60 REMARK 500 20 PHE B 165 -42.59 -143.41 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2KA2 RELATED DB: PDB REMARK 900 RELATED ID: 16012 RELATED DB: BMRB
DBREF 2KA1 A 154 188 UNP Q12983 BNIP3_HUMAN 154 188 DBREF 2KA1 B 154 188 UNP Q12983 BNIP3_HUMAN 154 188
SEQRES 1 A 35 GLY GLY ILE PHE SER ALA GLU PHE LEU LYS VAL PHE LEU SEQRES 2 A 35 PRO SER LEU LEU LEU SER HIS LEU LEU ALA ILE GLY LEU SEQRES 3 A 35 GLY ILE TYR ILE GLY ARG ARG LEU THR SEQRES 1 B 35 GLY GLY ILE PHE SER ALA GLU PHE LEU LYS VAL PHE LEU SEQRES 2 B 35 PRO SER LEU LEU LEU SER HIS LEU LEU ALA ILE GLY LEU SEQRES 3 B 35 GLY ILE TYR ILE GLY ARG ARG LEU THR
HELIX 1 1 SER A 158 LYS A 163 1 6 HELIX 2 2 PHE A 165 ARG A 186 1 22 HELIX 3 3 SER B 158 VAL B 164 1 7 HELIX 4 4 PHE B 165 THR B 188 1 24
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000