10 20 30 40 50 60 70 80 2K9M - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 19-OCT-08 2K9M
TITLE STRUCTURE OF THE CORE BINDING DOMAIN OF SIGMA54
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 69-198; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: RPON; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21B3-2
KEYWDS CORE BINDING DOMAIN, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR E.HONG,D.WEMMER
REVDAT 2 30-JUN-09 2K9M 1 JRNL REVDAT 1 26-MAY-09 2K9M 0
JRNL AUTH E.HONG,M.DOUCLEFF,D.E.WEMMER JRNL TITL STRUCTURE OF THE RNA POLYMERASE CORE-BINDING DOMAIN JRNL TITL 2 OF SIGMA(54) REVEALS A LIKELY CONFORMATIONAL JRNL TITL 3 FRACTURE POINT JRNL REF J.MOL.BIOL. V. 390 70 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19426742 JRNL DOI 10.1016/J.JMB.2009.04.070
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K9M COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB100849.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.6 MM [U-100% 13C; U-100% REMARK 210 15N] CORE BINDING DOMAIN, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-100% REMARK 210 15N] CORE BINDING DOMAIN, 90% REMARK 210 H2O/10% D2O; 0.6 MM [U-100% REMARK 210 13C; U-100% 15N] CORE BINDING REMARK 210 DOMAIN, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HBHA(CO)NH; 3D 1H REMARK 210 -15N NOESY; 3D HCCH-TOCSY; 3D REMARK 210 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY REMARK 210 3.114, CYANA REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 TYR A 99 46.91 -97.30 REMARK 500 1 GLU A 102 29.69 -79.73 REMARK 500 1 ASP A 143 -174.53 164.73 REMARK 500 1 ILE A 155 -72.04 -72.01 REMARK 500 1 LYS A 174 -169.19 179.34 REMARK 500 1 PHE A 190 66.18 -118.75 REMARK 500 1 SER A 195 144.26 -173.31 REMARK 500 2 TYR A 99 46.23 -97.94 REMARK 500 2 LEU A 137 163.79 -47.90 REMARK 500 2 ASP A 143 -170.61 164.08 REMARK 500 2 ILE A 155 -71.35 -72.40 REMARK 500 2 LEU A 187 -169.49 -115.20 REMARK 500 2 ARG A 188 152.81 179.66 REMARK 500 2 PHE A 190 67.83 37.05 REMARK 500 3 TYR A 99 45.20 -98.37 REMARK 500 3 LEU A 106 150.22 -48.05 REMARK 500 3 LEU A 137 163.82 -48.01 REMARK 500 3 ASP A 143 -173.37 165.59 REMARK 500 3 ILE A 155 -70.84 -72.81 REMARK 500 3 TYR A 156 79.60 -109.74 REMARK 500 3 LYS A 174 -169.74 -179.35 REMARK 500 4 TYR A 99 44.23 -92.58 REMARK 500 4 ASP A 143 -174.14 165.62 REMARK 500 4 ILE A 155 -71.30 -73.10 REMARK 500 4 TYR A 156 79.13 -109.55 REMARK 500 4 LEU A 187 -168.87 -115.36 REMARK 500 4 PHE A 190 66.19 36.78 REMARK 500 5 TYR A 99 40.53 -97.61 REMARK 500 5 ASP A 143 -176.41 164.26 REMARK 500 5 TYR A 156 79.60 -109.35 REMARK 500 5 LYS A 174 -169.08 -179.91 REMARK 500 5 LEU A 187 -168.75 -112.64 REMARK 500 5 ARG A 188 131.54 -175.56 REMARK 500 6 TYR A 99 44.61 -99.25 REMARK 500 6 LEU A 106 155.35 -49.87 REMARK 500 6 LEU A 137 172.05 -59.69 REMARK 500 6 ASP A 143 -174.57 167.29 REMARK 500 6 ILE A 155 -70.29 -75.81 REMARK 500 6 TYR A 156 79.46 -109.31 REMARK 500 6 LYS A 174 -178.34 -176.96 REMARK 500 7 LEU A 137 161.94 -46.95 REMARK 500 7 ASP A 143 -175.09 164.40 REMARK 500 7 ILE A 155 -71.27 -72.48 REMARK 500 7 PHE A 190 73.08 51.26 REMARK 500 7 SER A 193 108.07 64.11 REMARK 500 8 TYR A 99 47.03 -98.27 REMARK 500 8 GLU A 102 1.42 -69.66 REMARK 500 8 LEU A 137 164.06 -47.67 REMARK 500 8 ASP A 143 -174.52 163.77 REMARK 500 8 ILE A 155 -72.09 -72.25 REMARK 500 8 LYS A 174 -175.19 -172.79 REMARK 500 8 LEU A 187 -169.91 -117.43 REMARK 500 8 PHE A 190 76.92 -112.70 REMARK 500 8 SER A 195 -74.52 -159.75 REMARK 500 9 TYR A 99 42.04 -92.78 REMARK 500 9 GLU A 102 31.29 -79.63 REMARK 500 9 LEU A 106 150.43 -48.45 REMARK 500 9 ASP A 143 -173.18 164.85 REMARK 500 9 TYR A 156 78.22 -108.91 REMARK 500 9 LYS A 174 176.37 179.93 REMARK 500 9 PHE A 190 65.90 36.66 REMARK 500 10 TYR A 99 42.86 -92.92 REMARK 500 10 ASP A 143 -173.56 165.58 REMARK 500 10 ILE A 155 -70.60 -77.28 REMARK 500 10 TYR A 156 77.97 -109.81 REMARK 500 10 LEU A 187 -169.62 -103.90 REMARK 500 10 SER A 194 138.31 -174.75 REMARK 500 11 TYR A 99 46.22 -97.65 REMARK 500 11 ASP A 143 -172.29 165.47 REMARK 500 11 ILE A 155 -70.17 -74.84 REMARK 500 11 PHE A 190 71.85 -112.87 REMARK 500 11 SER A 193 161.81 175.36 REMARK 500 11 SER A 195 -74.46 -100.06 REMARK 500 12 TYR A 99 42.11 -95.71 REMARK 500 12 GLU A 102 0.00 -68.38 REMARK 500 12 ASP A 143 -174.52 166.50 REMARK 500 12 ILE A 155 -72.05 -73.36 REMARK 500 12 LYS A 174 177.52 179.48 REMARK 500 12 ARG A 188 -82.48 -140.90 REMARK 500 12 PHE A 190 66.03 37.07 REMARK 500 13 TYR A 99 43.58 -95.07 REMARK 500 13 ASP A 143 -177.18 165.27 REMARK 500 13 ILE A 155 -70.30 -75.48 REMARK 500 13 TYR A 156 79.61 -109.13 REMARK 500 13 LEU A 187 -169.00 -113.88 REMARK 500 13 SER A 195 62.45 -102.22 REMARK 500 14 TYR A 99 43.81 -92.85 REMARK 500 14 ASP A 143 -170.07 163.50 REMARK 500 14 ILE A 155 -72.07 -70.18 REMARK 500 14 PHE A 190 78.50 -111.90 REMARK 500 15 TYR A 99 45.53 -91.36 REMARK 500 15 ASP A 143 -176.37 164.33 REMARK 500 15 ILE A 155 -71.77 -70.89 REMARK 500 15 LYS A 174 -178.55 -179.82 REMARK 500 15 ARG A 188 -80.06 -140.22 REMARK 500 15 ALA A 196 125.89 -174.14 REMARK 500 16 TYR A 99 46.28 -93.84 REMARK 500 16 LEU A 137 165.26 -48.21 REMARK 500 16 ASP A 143 -171.97 166.97 REMARK 500 16 ILE A 155 -70.05 -73.02 REMARK 500 16 LYS A 174 -179.04 179.99 REMARK 500 16 PHE A 190 79.23 -111.85 REMARK 500 16 SER A 195 171.18 -55.44 REMARK 500 17 TYR A 99 43.33 -98.67 REMARK 500 17 GLU A 102 1.36 -67.56 REMARK 500 17 ARG A 118 62.73 68.40 REMARK 500 17 LEU A 137 170.23 -51.55 REMARK 500 17 ASP A 143 -170.92 169.95 REMARK 500 17 ILE A 155 -70.63 -73.33 REMARK 500 17 LYS A 174 165.77 179.47 REMARK 500 17 LEU A 187 -168.78 -111.88 REMARK 500 17 PHE A 190 73.49 29.43 REMARK 500 18 TYR A 99 45.45 -96.63 REMARK 500 18 LEU A 137 160.39 -47.80 REMARK 500 18 ASP A 143 -174.69 165.32 REMARK 500 18 TYR A 156 78.88 -109.20 REMARK 500 18 LYS A 174 -168.79 -179.43 REMARK 500 19 TYR A 99 41.19 -93.96 REMARK 500 19 ASP A 143 -171.25 165.24 REMARK 500 19 ILE A 155 -71.02 -72.53 REMARK 500 19 TYR A 156 79.39 -109.78 REMARK 500 19 LYS A 174 -169.20 -179.48 REMARK 500 19 PHE A 190 66.73 31.97 REMARK 500 19 SER A 194 101.28 -167.25 REMARK 500 20 LEU A 83 -71.91 -65.40 REMARK 500 20 TYR A 99 33.07 -96.53 REMARK 500 20 LEU A 106 153.45 -48.86 REMARK 500 20 LEU A 137 162.38 -47.10 REMARK 500 20 ASP A 143 -172.87 164.28 REMARK 500 20 ILE A 155 -71.96 -73.89 REMARK 500 20 TYR A 156 78.89 -109.86 REMARK 500 20 LYS A 174 -168.68 178.27 REMARK 500 20 LEU A 187 -169.02 -113.56 REMARK 500 20 SER A 194 91.06 -174.03 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K9L RELATED DB: PDB
DBREF 2K9M A 69 198 UNP O66858 O66858_AQUAE 69 198
SEQRES 1 A 130 TYR THR PRO SER GLU LEU GLU GLU LEU GLN GLN ASN ILE SEQRES 2 A 130 LYS LEU GLU LEU GLU GLY LYS GLU GLN GLU LEU ALA LEU SEQRES 3 A 130 GLU LEU LEU ASN TYR LEU ASN GLU LYS GLY PHE LEU SER SEQRES 4 A 130 LYS SER VAL GLU GLU ILE SER ASP VAL LEU ARG CYS SER SEQRES 5 A 130 VAL GLU GLU LEU GLU LYS VAL ARG GLN LYS VAL LEU ARG SEQRES 6 A 130 LEU GLU PRO LEU GLY VAL CYS SER LYS ASP VAL TRP GLU SEQRES 7 A 130 PHE LEU GLU LEU GLN ILE GLU GLU ILE TYR PRO GLU GLU SEQRES 8 A 130 GLU GLU ILE LEU LYS LYS ALA LEU ARG ASP LEU LYS ARG SEQRES 9 A 130 GLY LYS LYS LEU LYS PRO GLU ILE LYS GLY LYS LEU SER SEQRES 10 A 130 ARG LEU ARG LEU PHE PRO LEU SER SER SER ALA GLU LYS
HELIX 1 1 SER A 72 LEU A 85 1 14 HELIX 2 2 GLY A 87 LEU A 97 1 11 HELIX 3 3 SER A 109 LEU A 117 1 9 HELIX 4 4 SER A 120 ARG A 133 1 14 HELIX 5 5 TRP A 145 ILE A 155 1 11 HELIX 6 6 GLU A 159 GLY A 173 1 15 HELIX 7 7 LYS A 177 ARG A 186 1 10
CISPEP 1 GLU A 135 PRO A 136 1 0.01 CISPEP 2 GLU A 135 PRO A 136 2 -0.01 CISPEP 3 GLU A 135 PRO A 136 3 -0.04 CISPEP 4 GLU A 135 PRO A 136 4 0.04 CISPEP 5 GLU A 135 PRO A 136 5 -0.02 CISPEP 6 GLU A 135 PRO A 136 6 0.01 CISPEP 7 GLU A 135 PRO A 136 7 -0.06 CISPEP 8 GLU A 135 PRO A 136 8 0.07 CISPEP 9 GLU A 135 PRO A 136 9 -0.02 CISPEP 10 GLU A 135 PRO A 136 10 0.05 CISPEP 11 GLU A 135 PRO A 136 11 0.02 CISPEP 12 GLU A 135 PRO A 136 12 -0.04 CISPEP 13 GLU A 135 PRO A 136 13 -0.06 CISPEP 14 GLU A 135 PRO A 136 14 0.01 CISPEP 15 GLU A 135 PRO A 136 15 0.02 CISPEP 16 GLU A 135 PRO A 136 16 0.00 CISPEP 17 GLU A 135 PRO A 136 17 0.06 CISPEP 18 GLU A 135 PRO A 136 18 0.08 CISPEP 19 GLU A 135 PRO A 136 19 -0.01 CISPEP 20 GLU A 135 PRO A 136 20 0.00
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000