10 20 30 40 50 60 70 80 2K9L - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER TRANSCRIPTION 19-OCT-08 2K9L
TITLE STRUCTURE OF THE CORE BINDING DOMAIN OF SIGMA54
COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA POLYMERASE SIGMA FACTOR RPON; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SEQUENCE DATABASE RESIDUES 60-135; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 3 ORGANISM_TAXID: 63363; SOURCE 4 GENE: RPON; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET21B3-2
KEYWDS PROTEIN, TRANSCRIPTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR E.HONG,D.WEMMER
REVDAT 2 30-JUN-09 2K9L 1 JRNL REVDAT 1 26-MAY-09 2K9L 0
JRNL AUTH E.HONG,M.DOUCLEFF,D.E.WEMMER JRNL TITL STRUCTURE OF THE RNA POLYMERASE CORE-BINDING DOMAIN JRNL TITL 2 OF SIGMA(54) REVEALS A LIKELY CONFORMATIONAL JRNL TITL 3 FRACTURE POINT JRNL REF J.MOL.BIOL. V. 390 70 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19426742 JRNL DOI 10.1016/J.JMB.2009.04.070
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K9L COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB100848.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 RNAP, 90% H2O/10% D2O; 1 MM [U REMARK 210 -100% 15N] RNAP, 90% H2O/10% REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D HNCACB; 3D CBCA(CO) REMARK 210 NH; 3D H(CCO)NH; 3D C(CO)NH; REMARK 210 3D HBHA(CO)NH; 3D 1H-15N REMARK 210 NOESY; 3D HCCH-TOCSY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA, NMRPIPE 2.4, SPARKY REMARK 210 3.114 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 61 -74.72 -87.07 REMARK 500 1 PRO A 64 -169.98 -69.78 REMARK 500 1 GLU A 84 -74.63 -104.39 REMARK 500 1 LEU A 85 175.77 -54.35 REMARK 500 1 GLU A 86 -179.41 -175.13 REMARK 500 1 LYS A 88 42.94 -109.88 REMARK 500 1 LYS A 108 -169.77 -64.99 REMARK 500 2 GLU A 61 -74.40 -70.71 REMARK 500 2 PRO A 64 -170.13 -69.81 REMARK 500 2 GLU A 84 -74.31 -105.29 REMARK 500 2 LEU A 85 175.41 -53.85 REMARK 500 2 GLU A 86 -179.45 -176.12 REMARK 500 2 LYS A 88 48.54 -106.03 REMARK 500 2 GLU A 89 -56.02 -138.30 REMARK 500 2 LEU A 100 100.70 -160.33 REMARK 500 2 SER A 107 171.53 -52.09 REMARK 500 2 LYS A 108 -163.04 -70.44 REMARK 500 2 ARG A 118 18.89 59.78 REMARK 500 3 PRO A 64 -170.03 -69.73 REMARK 500 3 GLN A 66 41.54 -145.58 REMARK 500 3 GLU A 84 -75.11 -84.28 REMARK 500 3 LEU A 85 171.76 -51.92 REMARK 500 3 LYS A 88 48.20 -107.28 REMARK 500 3 GLU A 89 -52.09 -139.64 REMARK 500 3 PHE A 105 107.60 -51.39 REMARK 500 3 SER A 107 176.83 -53.99 REMARK 500 3 LYS A 108 -162.66 -62.44 REMARK 500 4 GLU A 61 43.58 -94.27 REMARK 500 4 PRO A 64 -170.20 -69.77 REMARK 500 4 GLU A 84 -74.84 -107.27 REMARK 500 4 LEU A 85 172.99 -52.93 REMARK 500 4 GLU A 86 -177.07 -173.29 REMARK 500 4 LYS A 88 41.39 -98.38 REMARK 500 4 GLU A 89 -59.89 -128.81 REMARK 500 4 LEU A 100 112.65 -174.34 REMARK 500 4 SER A 107 178.45 -55.28 REMARK 500 4 LYS A 108 -161.02 -72.43 REMARK 500 5 THR A 62 174.03 -53.99 REMARK 500 5 PRO A 64 -170.17 -69.75 REMARK 500 5 GLN A 66 35.27 -95.14 REMARK 500 5 GLU A 84 -73.75 -106.43 REMARK 500 5 LYS A 88 45.38 -95.74 REMARK 500 5 GLU A 89 -47.33 -133.47 REMARK 500 5 SER A 107 171.79 -52.02 REMARK 500 5 LYS A 108 -169.63 -60.32 REMARK 500 6 PRO A 64 -169.70 -69.78 REMARK 500 6 GLU A 84 -76.56 -103.13 REMARK 500 6 LEU A 85 173.23 -53.48 REMARK 500 6 LYS A 88 43.97 -98.69 REMARK 500 6 GLU A 89 -62.00 -134.41 REMARK 500 6 SER A 107 -178.93 -56.36 REMARK 500 6 LYS A 108 -159.53 -75.97 REMARK 500 7 GLU A 61 -179.34 -174.61 REMARK 500 7 PRO A 64 -170.32 -69.72 REMARK 500 7 GLU A 84 -75.13 -106.70 REMARK 500 7 LEU A 85 171.72 -52.09 REMARK 500 7 LYS A 88 49.09 -94.15 REMARK 500 7 GLU A 89 -49.69 -140.64 REMARK 500 7 LYS A 108 -162.63 -72.35 REMARK 500 8 GLU A 61 -72.51 -74.80 REMARK 500 8 PRO A 64 -168.02 -69.72 REMARK 500 8 GLU A 84 -74.10 -106.78 REMARK 500 8 LYS A 88 49.05 -98.00 REMARK 500 8 GLU A 89 -46.77 -135.93 REMARK 500 8 SER A 107 170.43 -51.41 REMARK 500 8 LYS A 108 -156.81 -74.02 REMARK 500 9 PRO A 64 -170.58 -69.84 REMARK 500 9 GLU A 84 -75.62 -105.98 REMARK 500 9 LEU A 85 171.60 -52.29 REMARK 500 9 LYS A 88 49.25 -99.72 REMARK 500 9 GLU A 89 -55.99 -140.20 REMARK 500 9 LYS A 103 97.94 -59.03 REMARK 500 9 PHE A 105 105.74 -50.84 REMARK 500 9 SER A 107 -179.63 -55.09 REMARK 500 9 LYS A 108 -163.76 -61.93 REMARK 500 10 PRO A 64 -169.43 -69.73 REMARK 500 10 GLU A 84 -74.15 -102.97 REMARK 500 10 GLU A 86 129.86 178.28 REMARK 500 10 GLU A 89 -57.84 -136.09 REMARK 500 10 SER A 107 172.06 -52.09 REMARK 500 10 LYS A 108 -162.28 -64.86 REMARK 500 11 THR A 62 -74.59 -60.42 REMARK 500 11 PRO A 64 -169.17 -69.75 REMARK 500 11 GLU A 84 -74.15 -106.74 REMARK 500 11 GLU A 86 119.59 179.10 REMARK 500 11 GLU A 89 -52.29 -134.75 REMARK 500 11 LYS A 108 -168.13 -67.01 REMARK 500 12 PRO A 64 -169.28 -69.80 REMARK 500 12 GLU A 84 -74.49 -104.78 REMARK 500 12 LEU A 85 175.77 -54.09 REMARK 500 12 GLU A 86 -179.62 -177.49 REMARK 500 12 GLU A 89 -59.39 -126.77 REMARK 500 12 LYS A 108 -162.26 -62.86 REMARK 500 13 PRO A 64 -169.52 -69.73 REMARK 500 13 GLU A 84 -75.97 -76.39 REMARK 500 13 GLU A 89 -44.88 -139.61 REMARK 500 13 LEU A 100 109.80 -165.64 REMARK 500 13 PHE A 105 109.48 -50.78 REMARK 500 13 SER A 107 171.15 -51.28 REMARK 500 13 LYS A 108 -160.56 -63.96 REMARK 500 14 GLU A 61 -74.63 -88.69 REMARK 500 14 PRO A 64 -169.86 -69.72 REMARK 500 14 GLU A 84 -74.45 -107.71 REMARK 500 14 LEU A 85 172.46 -52.52 REMARK 500 14 LYS A 88 46.72 -94.80 REMARK 500 14 GLU A 89 -58.04 -138.64 REMARK 500 14 LEU A 100 118.89 -161.04 REMARK 500 14 SER A 107 173.63 -52.49 REMARK 500 14 LYS A 108 -163.79 -62.28 REMARK 500 15 PRO A 64 -170.47 -69.79 REMARK 500 15 PRO A 68 -169.13 -69.77 REMARK 500 15 GLU A 84 -76.45 -77.15 REMARK 500 15 LYS A 88 48.41 -105.46 REMARK 500 15 GLU A 89 -50.27 -137.21 REMARK 500 15 LEU A 100 96.40 -165.35 REMARK 500 15 SER A 107 170.99 -51.80 REMARK 500 15 LYS A 108 -159.65 -86.18 REMARK 500 16 GLU A 61 -73.01 -59.07 REMARK 500 16 PRO A 64 -170.01 -69.75 REMARK 500 16 GLU A 84 -72.67 -104.80 REMARK 500 16 LEU A 85 178.34 -55.58 REMARK 500 16 GLU A 86 -178.20 -178.40 REMARK 500 16 LYS A 88 42.30 -107.10 REMARK 500 16 GLU A 89 -54.15 -129.56 REMARK 500 16 LEU A 100 104.49 -161.45 REMARK 500 16 SER A 107 171.42 -51.94 REMARK 500 16 LYS A 108 -159.93 -74.55 REMARK 500 17 GLU A 61 -73.41 -100.50 REMARK 500 17 PRO A 64 -168.83 -69.74 REMARK 500 17 GLU A 84 -76.19 -86.09 REMARK 500 17 LEU A 85 171.02 -52.43 REMARK 500 17 GLU A 86 -177.08 -170.06 REMARK 500 17 LYS A 88 42.51 -103.14 REMARK 500 17 GLU A 89 -56.43 -128.07 REMARK 500 17 LEU A 100 89.13 -162.97 REMARK 500 17 SER A 107 173.99 -53.31 REMARK 500 17 LYS A 108 -163.07 -67.84 REMARK 500 17 ARG A 118 19.56 57.41 REMARK 500 18 PRO A 64 -168.75 -69.81 REMARK 500 18 GLU A 84 -73.00 -104.90 REMARK 500 18 LEU A 85 174.82 -54.53 REMARK 500 18 LYS A 88 49.36 -99.16 REMARK 500 18 GLU A 89 -51.18 -139.17 REMARK 500 18 SER A 107 -179.49 -56.26 REMARK 500 18 LYS A 108 -162.90 -66.31 REMARK 500 19 PRO A 64 -165.15 -69.76 REMARK 500 19 TYR A 65 -74.43 -46.43 REMARK 500 19 PRO A 68 -168.75 -69.76 REMARK 500 19 GLU A 84 -74.90 -100.78 REMARK 500 19 LEU A 85 175.16 -53.98 REMARK 500 19 LYS A 88 48.17 -100.21 REMARK 500 19 GLU A 89 -51.56 -138.98 REMARK 500 19 GLU A 102 -1.32 74.18 REMARK 500 19 SER A 107 171.60 -52.15 REMARK 500 20 PRO A 64 -170.33 -69.75 REMARK 500 20 GLN A 66 30.75 -95.38 REMARK 500 20 GLU A 84 -75.57 -106.31 REMARK 500 20 GLU A 86 142.17 -177.71 REMARK 500 20 GLU A 89 -53.76 -137.88 REMARK 500 20 SER A 107 173.69 -53.08 REMARK 500 20 LYS A 108 -162.45 -77.39 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K9M RELATED DB: PDB
DBREF 2K9L A 60 135 UNP O66858 O66858_AQUAE 60 135
SEQRES 1 A 76 LYS GLU THR VAL PRO TYR GLN ILE PRO TYR THR PRO SER SEQRES 2 A 76 GLU LEU GLU GLU LEU GLN GLN ASN ILE LYS LEU GLU LEU SEQRES 3 A 76 GLU GLY LYS GLU GLN GLU LEU ALA LEU GLU LEU LEU ASN SEQRES 4 A 76 TYR LEU ASN GLU LYS GLY PHE LEU SER LYS SER VAL GLU SEQRES 5 A 76 GLU ILE SER ASP VAL LEU ARG CYS SER VAL GLU GLU LEU SEQRES 6 A 76 GLU LYS VAL ARG GLN LYS VAL LEU ARG LEU GLU
HELIX 1 1 THR A 70 LEU A 85 1 16 HELIX 2 2 GLU A 89 LEU A 100 1 12 HELIX 3 3 SER A 109 ARG A 118 1 10 HELIX 4 4 SER A 120 ARG A 133 1 14
CISPEP 1 ILE A 67 PRO A 68 1 -0.17 CISPEP 2 ILE A 67 PRO A 68 2 -0.19 CISPEP 3 ILE A 67 PRO A 68 3 -0.14 CISPEP 4 ILE A 67 PRO A 68 4 -0.15 CISPEP 5 ILE A 67 PRO A 68 5 -0.10 CISPEP 6 ILE A 67 PRO A 68 6 -0.13 CISPEP 7 ILE A 67 PRO A 68 7 -0.10 CISPEP 8 ILE A 67 PRO A 68 8 -0.08 CISPEP 9 ILE A 67 PRO A 68 9 -0.14 CISPEP 10 ILE A 67 PRO A 68 10 -0.10 CISPEP 11 ILE A 67 PRO A 68 11 -0.17 CISPEP 12 ILE A 67 PRO A 68 12 -0.14 CISPEP 13 ILE A 67 PRO A 68 13 -0.12 CISPEP 14 ILE A 67 PRO A 68 14 -0.19 CISPEP 15 ILE A 67 PRO A 68 15 -0.11 CISPEP 16 ILE A 67 PRO A 68 16 -0.05 CISPEP 17 ILE A 67 PRO A 68 17 -0.06 CISPEP 18 ILE A 67 PRO A 68 18 -0.09 CISPEP 19 ILE A 67 PRO A 68 19 -0.08 CISPEP 20 ILE A 67 PRO A 68 20 -0.10
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000