10 20 30 40 50 60 70 80 2K96 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER RNA 29-SEP-08 2K96
TITLE SOLUTION STRUCTURE OF THE RDC-REFINED P2B-P3 PSEUDOKNOT FROM TITLE 2 HUMAN TELOMERASE RNA (DELTA U177)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOMERASE RNA P2B-P3 PSEUDOKNOT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P2B-P3 PSEUDOKNOT; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES
SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES
KEYWDS TELOMERASE, RNA, TRIPLE HELIX, RDC
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR N.-K.KIM,Q.ZHANG,J.ZHOU,C.A.THEIMER,R.D.PETERSON,J.FEIGON
REVDAT 4 09-JUN-09 2K96 1 REVDAT REVDAT 3 24-FEB-09 2K96 1 VERSN REVDAT 2 16-DEC-08 2K96 1 JRNL REVDAT 1 25-NOV-08 2K96 0
JRNL AUTH N.K.KIM,Q.ZHANG,J.ZHOU,C.A.THEIMER,R.D.PETERSON, JRNL AUTH 2 J.FEIGON JRNL TITL SOLUTION STRUCTURE AND DYNAMICS OF THE WILD-TYPE JRNL TITL 2 PSEUDOKNOT OF HUMAN TELOMERASE RNA. JRNL REF J.MOL.BIOL. V. 384 1249 2008 JRNL REFN ISSN 0022-2836 JRNL PMID 18950640 JRNL DOI 10.1016/J.JMB.2008.10.005
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.A.THEIMER,C.A.BLOIS,J.FEIGON REMARK 1 TITL STRUCTURE OF THE HUMAN TELOMERASE RNA PSEUDOKNOT REMARK 1 TITL 2 REVEALS CONSERVED TERTIARY INTERACTIONS ESSENTIAL REMARK 1 TITL 3 FOR FUNCTION REMARK 1 REF MOL.CELL V. 17 671 2005 REMARK 1 REFN ISSN 1097-2765 REMARK 1 PMID 15749017
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 2.9.8 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: PDB ENTRY 2K96 IS A BETTER REFINED REMARK 3 STRUCTURE OF ENTRY 1YMO WITH ADDITIONAL RDCS
REMARK 4 REMARK 4 2K96 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-OCT-08. REMARK 100 THE RCSB ID CODE IS RCSB100833.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 283; 293 REMARK 210 PH : 6.3; 6.3 REMARK 210 IONIC STRENGTH : NULL; NULL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-98% 13C; U-98% 15N] REMARK 210 PKDU, 10 MM SODIUM PHOSPHATE, REMARK 210 200 MM POTASSIUM CHLORIDE, 50 REMARK 210 UM EDTA, 95 % H2O, 5 % D2O; 1 REMARK 210 MM [U-98% 13C; U-98% 15N] REMARK 210 PKDU, 10 MM SODIUM PHOSPHATE, REMARK 210 200 MM POTASSIUM CHLORIDE, 50 REMARK 210 UM EDTA, 100 % D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D JNN-HNN COSY; 2D 1H-15N REMARK 210 HSQC; 2D 1H-13C S3CT HSQC; 2D REMARK 210 15N CPMG NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR_NIH 2.9.8, MOLMOL REMARK 210 2K.2, NMRDRAW, NMRPIPE, REMARK 210 NMRVIEW, SPARKY, XWINNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O2' U A 179 O4' C A 180 2.09 REMARK 500 O2' C A 104 OP1 U A 105 2.12 REMARK 500 O2' U A 114 O4' U A 115 2.15 REMARK 500 O2' G A 94 O5' G A 95 2.16 REMARK 500 O2' U A 105 O2' C A 106 2.16 REMARK 500 O2' A A 172 OP1 A A 173 2.17 REMARK 500 O2' A A 167 O5' A A 168 2.18 REMARK 500 O2' G A 93 O5' G A 94 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 G A 93 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 93 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 94 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 1 G A 94 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 94 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 95 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 95 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 G A 98 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 1 G A 98 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 G A 107 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 1 G A 107 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 G A 110 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 110 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 111 N7 - C8 - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 A A 117 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 118 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 118 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 1 A A 167 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 1 A A 168 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 169 N7 - C8 - N9 ANGL. DEV. = 3.5 DEGREES REMARK 500 1 A A 171 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 172 N7 - C8 - N9 ANGL. DEV. = 4.1 DEGREES REMARK 500 1 A A 173 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 174 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 A A 175 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 A A 176 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 1 G A 178 N7 - C8 - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 1 G A 178 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 1 A A 181 N7 - C8 - N9 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 G A 182 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 1 G A 182 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 1 A A 184 N7 - C8 - N9 ANGL. DEV. = 3.7 DEGREES REMARK 500 2 G A 93 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 93 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 94 O4' - C1' - N9 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 G A 94 N7 - C8 - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 G A 94 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 2 G A 95 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 G A 95 C8 - N9 - C4 ANGL. DEV. = -2.8 DEGREES REMARK 500 2 G A 98 N7 - C8 - N9 ANGL. DEV. = 4.6 DEGREES REMARK 500 2 G A 98 C8 - N9 - C4 ANGL. DEV. = -2.9 DEGREES REMARK 500 2 G A 107 N7 - C8 - N9 ANGL. DEV. = 4.4 DEGREES REMARK 500 2 G A 107 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 G A 110 N7 - C8 - N9 ANGL. DEV. = 4.8 DEGREES REMARK 500 2 G A 110 C8 - N9 - C4 ANGL. DEV. = -2.7 DEGREES REMARK 500 2 A A 111 N7 - C8 - N9 ANGL. DEV. = 4.0 DEGREES REMARK 500 2 A A 117 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 2 A A 117 N7 - C8 - N9 ANGL. DEV. = 3.6 DEGREES REMARK 500 2 G A 118 N7 - C8 - N9 ANGL. DEV. = 4.5 DEGREES REMARK 500 2 G A 118 C8 - N9 - C4 ANGL. DEV. = -2.6 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 638 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NA2 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF P2B HAIRPIN FROM HUMAN TELOMERASE RNA REMARK 900 RELATED ID: 2K95 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE WILD-TYPE P2B-P3 PSEUDOKNOT OF REMARK 900 HUMAN TELOMERASE RNA REMARK 900 RELATED ID: 1YMO RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE P2B-P3 PSEUDOKNOT FROM HUMAN REMARK 900 TELOMERASE RNA
DBREF 2K96 A 93 184 PDB 2K96 2K96 93 184
SEQRES 1 A 47 G G G C U G U U U U U C U SEQRES 2 A 47 C G C U G A C U U U C A G SEQRES 3 A 47 C C C C A A A C A A A A A SEQRES 4 A 47 A G U C A G C A
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000