10 20 30 40 50 60 70 80 2K8Q - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL PROTEIN 18-SEP-08 2K8Q
TITLE NMR STRUCTURE OF SHQ1P N-TERMINAL DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN SHQ1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: SMALL NUCLEOLAR RNAS OF THE BOX H/ACA FAMILY COMPND 5 QUANTITATIVE ACCUMULATION PROTEIN 1; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BREWER'S YEAST,LAGER BEER YEAST,YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: SHQ1, YIL104C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET32
KEYWDS BETA-SANDWICH, CS DOMAIN, NUCLEUS, STRUCTURAL PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.S.GODIN,G.VARANI
REVDAT 2 30-JUN-09 2K8Q 1 JRNL REVDAT 1 05-MAY-09 2K8Q 0
JRNL AUTH K.S.GODIN,H.WALBOTT,N.LEULLIOT,H.VAN TILBEURGH, JRNL AUTH 2 G.VARANI JRNL TITL THE BOX H/ACA SNORNP ASSEMBLY FACTOR SHQ1P IS A JRNL TITL 2 CHAPERONE PROTEIN HOMOLOGOUS TO HSP90 COCHAPERONES JRNL TITL 3 THAT BINDS TO THE CBF5P ENZYME JRNL REF J.MOL.BIOL. V. 390 231 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19426738 JRNL DOI 10.1016/J.JMB.2009.04.076
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA 2.1 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K8Q COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB100817.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298 REMARK 210 PH : 7.0; 7.0 REMARK 210 IONIC STRENGTH : 50; 50 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] SHQ1 N-TERMINUS, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO) REMARK 210 NH; 3D HNCO; 3D HNCA; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D 1H-15N NOESY; 3D 1H REMARK 210 -13C NOESY; 2D 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE; INOVA; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.110, CYANA 2.1, REMARK 210 NMRPIPE, MOLMOL 2K.2, TALOS, REMARK 210 PROCHECKNMR REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 3 146.38 170.08 REMARK 500 1 GLU A 13 -41.02 -142.36 REMARK 500 1 ASN A 23 34.53 -94.23 REMARK 500 1 ARG A 25 103.52 -50.49 REMARK 500 1 GLU A 32 89.36 -179.14 REMARK 500 1 ASN A 38 -51.41 -139.26 REMARK 500 1 SER A 45 166.61 63.45 REMARK 500 1 ASP A 60 -168.86 -115.83 REMARK 500 1 PRO A 121 -176.52 -69.79 REMARK 500 1 LEU A 122 144.82 -173.77 REMARK 500 1 GLU A 127 172.85 -55.35 REMARK 500 2 ASP A 11 -166.99 -123.42 REMARK 500 2 GLU A 13 -40.44 -150.95 REMARK 500 2 ILE A 24 -177.13 -59.90 REMARK 500 2 ARG A 25 103.48 -51.80 REMARK 500 2 GLU A 32 84.49 -174.46 REMARK 500 2 ASN A 38 -52.88 -137.15 REMARK 500 2 SER A 45 166.59 62.72 REMARK 500 2 ASP A 60 -168.12 -119.70 REMARK 500 3 PRO A 4 -85.75 -69.75 REMARK 500 3 GLU A 13 -40.73 -143.91 REMARK 500 3 ILE A 24 -176.80 -59.09 REMARK 500 3 ARG A 25 102.49 -52.19 REMARK 500 3 GLU A 32 84.89 -174.19 REMARK 500 3 ASN A 38 -51.33 -138.38 REMARK 500 3 SER A 45 165.65 63.52 REMARK 500 3 ASP A 60 -168.47 -116.12 REMARK 500 3 ALA A 106 102.24 -57.41 REMARK 500 3 PRO A 121 -171.63 -69.83 REMARK 500 3 VAL A 126 50.77 -117.39 REMARK 500 4 GLU A 13 -40.62 -137.38 REMARK 500 4 ASN A 23 59.83 -100.00 REMARK 500 4 ARG A 25 19.99 58.87 REMARK 500 4 GLU A 32 83.97 -172.62 REMARK 500 4 ASN A 38 -50.31 -139.39 REMARK 500 4 SER A 45 166.74 60.89 REMARK 500 4 ASP A 102 103.12 -53.05 REMARK 500 4 PRO A 121 -178.75 -69.81 REMARK 500 4 LEU A 122 145.14 -172.79 REMARK 500 5 PHE A 6 131.86 -171.43 REMARK 500 5 GLU A 13 -41.09 -137.21 REMARK 500 5 LEU A 31 109.43 -51.31 REMARK 500 5 GLU A 32 68.51 -174.65 REMARK 500 5 ASN A 38 -51.45 -139.22 REMARK 500 5 SER A 45 166.85 60.85 REMARK 500 5 ASP A 60 -167.93 -119.61 REMARK 500 5 ALA A 106 108.56 -58.84 REMARK 500 6 THR A 3 146.23 170.60 REMARK 500 6 GLU A 13 -41.29 -142.82 REMARK 500 6 ILE A 24 -175.51 -58.30 REMARK 500 6 ARG A 25 104.36 -50.08 REMARK 500 6 GLU A 32 80.09 -175.12 REMARK 500 6 ASN A 38 -51.11 -140.22 REMARK 500 6 SER A 45 166.88 63.08 REMARK 500 6 ASP A 60 -167.66 -103.07 REMARK 500 6 LEU A 122 145.36 -173.06 REMARK 500 7 GLU A 13 -41.86 -143.39 REMARK 500 7 GLU A 32 72.21 -174.91 REMARK 500 7 ASN A 38 -50.09 -138.31 REMARK 500 7 SER A 45 166.04 61.29 REMARK 500 7 ASP A 60 -167.07 -117.80 REMARK 500 7 GLN A 119 100.17 -56.28 REMARK 500 8 GLU A 13 -40.26 -154.61 REMARK 500 8 SER A 22 -179.74 -68.07 REMARK 500 8 ILE A 24 176.45 -54.40 REMARK 500 8 ARG A 25 95.21 -59.50 REMARK 500 8 SER A 27 -75.89 -51.86 REMARK 500 8 GLU A 32 83.61 -173.75 REMARK 500 8 GLN A 36 -168.57 -72.02 REMARK 500 8 ASN A 38 -48.76 -141.72 REMARK 500 8 SER A 45 166.88 63.76 REMARK 500 8 ASP A 60 -167.56 -110.97 REMARK 500 8 GLU A 88 -42.22 -131.37 REMARK 500 8 LYS A 120 68.35 -156.12 REMARK 500 9 THR A 3 140.73 172.82 REMARK 500 9 PHE A 6 136.02 -170.60 REMARK 500 9 ILE A 24 -178.33 -56.71 REMARK 500 9 ARG A 25 102.81 -52.96 REMARK 500 9 LEU A 31 104.67 -51.94 REMARK 500 9 GLU A 32 65.32 -171.51 REMARK 500 9 ASN A 38 -50.85 -139.45 REMARK 500 9 SER A 45 166.77 63.79 REMARK 500 9 ASP A 60 -169.47 -107.15 REMARK 500 9 LYS A 120 71.64 54.21 REMARK 500 9 PRO A 121 -179.68 -69.76 REMARK 500 10 THR A 3 145.63 170.90 REMARK 500 10 GLU A 13 -40.95 -143.01 REMARK 500 10 ILE A 24 -175.96 -57.65 REMARK 500 10 ARG A 25 104.45 -49.58 REMARK 500 10 GLU A 32 82.67 -173.93 REMARK 500 10 GLN A 36 -169.65 -72.68 REMARK 500 10 ASN A 38 -49.77 -137.05 REMARK 500 10 SER A 45 166.38 63.23 REMARK 500 10 ASP A 60 -166.28 -117.35 REMARK 500 10 LYS A 116 171.63 -52.86 REMARK 500 10 GLN A 119 105.29 -57.61 REMARK 500 10 PRO A 121 -175.02 -69.74 REMARK 500 11 PHE A 6 131.77 -173.05 REMARK 500 11 GLU A 13 -39.88 -143.91 REMARK 500 11 ILE A 24 -177.33 -57.22 REMARK 500 11 ARG A 25 96.59 -60.02 REMARK 500 11 GLU A 32 79.38 -174.46 REMARK 500 11 ASN A 38 -52.02 -140.05 REMARK 500 11 SER A 45 166.85 63.68 REMARK 500 11 ASP A 60 -167.92 -110.63 REMARK 500 11 THR A 118 105.07 -52.91 REMARK 500 11 LYS A 120 68.12 -117.86 REMARK 500 11 PRO A 121 -170.88 -69.77 REMARK 500 12 GLU A 13 -38.45 -130.25 REMARK 500 12 ARG A 25 41.09 -174.39 REMARK 500 12 GLU A 32 88.03 -176.24 REMARK 500 12 GLN A 36 -169.20 -76.69 REMARK 500 12 ASN A 38 -49.05 -140.00 REMARK 500 12 SER A 45 167.09 60.63 REMARK 500 12 ASP A 60 -165.58 -118.76 REMARK 500 12 GLN A 100 108.78 -52.12 REMARK 500 13 GLU A 13 -38.50 -134.64 REMARK 500 13 ILE A 24 93.77 -59.79 REMARK 500 13 LEU A 31 108.71 -50.43 REMARK 500 13 GLU A 32 81.54 -158.52 REMARK 500 13 ASN A 38 -50.01 -137.08 REMARK 500 13 SER A 45 166.03 64.46 REMARK 500 13 ASP A 60 -167.95 -108.86 REMARK 500 13 ALA A 98 74.99 63.04 REMARK 500 13 GLU A 111 -175.30 64.07 REMARK 500 13 PRO A 121 -178.77 -69.77 REMARK 500 13 GLU A 127 170.28 -57.61 REMARK 500 14 GLU A 13 -41.63 -145.09 REMARK 500 14 ILE A 24 -176.41 -57.61 REMARK 500 14 ARG A 25 101.50 -52.62 REMARK 500 14 GLU A 32 82.31 -177.47 REMARK 500 14 ASN A 38 -51.23 -138.78 REMARK 500 14 SER A 45 165.92 60.96 REMARK 500 14 ASP A 60 -166.98 -116.46 REMARK 500 14 LYS A 120 69.40 -155.01 REMARK 500 15 PHE A 6 147.46 -171.68 REMARK 500 15 GLU A 32 82.64 -176.22 REMARK 500 15 ASN A 38 -50.20 -142.69 REMARK 500 15 SER A 45 166.37 63.30 REMARK 500 15 ASP A 60 -167.92 -115.12 REMARK 500 15 ASN A 112 104.32 -55.78 REMARK 500 15 THR A 118 171.81 -53.47 REMARK 500 15 GLN A 119 101.01 -58.53 REMARK 500 15 LYS A 120 71.05 -163.74 REMARK 500 16 ILE A 24 -179.40 -55.77 REMARK 500 16 ARG A 25 103.46 -50.47 REMARK 500 16 VAL A 29 76.71 -103.12 REMARK 500 16 LEU A 31 100.67 -55.39 REMARK 500 16 GLU A 32 68.93 -165.97 REMARK 500 16 ASN A 38 -49.88 -139.36 REMARK 500 16 SER A 45 167.01 61.12 REMARK 500 16 ASP A 60 -167.10 -116.22 REMARK 500 16 PRO A 121 -172.49 -69.72 REMARK 500 17 THR A 3 146.04 172.83 REMARK 500 17 GLU A 32 85.53 -165.97 REMARK 500 17 ASN A 38 -51.23 -140.96 REMARK 500 17 LEU A 44 152.75 -49.87 REMARK 500 17 SER A 45 167.62 61.75 REMARK 500 17 ASP A 60 -167.46 -117.27 REMARK 500 17 ALA A 98 62.04 64.64 REMARK 500 17 PRO A 121 -172.35 -69.79 REMARK 500 18 THR A 3 146.24 171.37 REMARK 500 18 PRO A 4 -81.59 -69.78 REMARK 500 18 GLU A 13 -40.75 -155.14 REMARK 500 18 ILE A 24 -179.77 -56.42 REMARK 500 18 ARG A 25 102.42 -52.34 REMARK 500 18 LEU A 31 109.44 -52.37 REMARK 500 18 GLU A 32 67.85 -175.17 REMARK 500 18 ASN A 38 -51.04 -137.68 REMARK 500 18 SER A 45 166.42 63.37 REMARK 500 18 ASP A 60 -168.92 -114.86 REMARK 500 18 ASP A 89 24.53 -142.08 REMARK 500 18 PRO A 121 -179.68 -69.74 REMARK 500 18 VAL A 126 53.87 -109.42 REMARK 500 18 GLU A 127 22.73 -144.25 REMARK 500 19 PRO A 4 -83.49 -69.68 REMARK 500 19 GLU A 13 -39.81 -135.54 REMARK 500 19 ILE A 24 99.79 -53.08 REMARK 500 19 GLU A 32 89.09 -166.76 REMARK 500 19 GLN A 36 -169.00 -74.62 REMARK 500 19 ASN A 38 -49.27 -139.16 REMARK 500 19 SER A 45 166.75 62.64 REMARK 500 19 ASP A 60 -167.28 -108.22 REMARK 500 19 VAL A 126 30.43 -96.81 REMARK 500 20 THR A 3 145.63 174.57 REMARK 500 20 ARG A 25 38.93 -141.12 REMARK 500 20 GLU A 32 88.60 -174.58 REMARK 500 20 ASN A 38 -49.02 -141.33 REMARK 500 20 LEU A 44 151.35 -49.88 REMARK 500 20 SER A 45 167.65 62.32 REMARK 500 20 ASP A 114 160.81 63.09 REMARK 500 20 THR A 118 43.64 36.96 REMARK 500 20 LYS A 120 67.07 -170.84 REMARK 500 REMARK 500 REMARK: NULL
DBREF 2K8Q A 1 134 UNP P40486 SHQ1_YEAST 1 134
SEQADV 2K8Q GLY A 1 UNP P40486 MET 1 ENGINEERED
SEQRES 1 A 134 GLY ILE THR PRO ARG PHE SER ILE THR GLN ASP GLU GLU SEQRES 2 A 134 PHE ILE PHE LEU LYS ILE PHE ILE SER ASN ILE ARG PHE SEQRES 3 A 134 SER ALA VAL GLY LEU GLU ILE ILE ILE GLN GLU ASN MET SEQRES 4 A 134 ILE ILE PHE HIS LEU SER PRO TYR TYR LEU ARG LEU ARG SEQRES 5 A 134 PHE PRO HIS GLU LEU ILE ASP ASP GLU ARG SER THR ALA SEQRES 6 A 134 GLN TYR ASP SER LYS ASP GLU CYS ILE ASN VAL LYS VAL SEQRES 7 A 134 ALA LYS LEU ASN LYS ASN GLU TYR PHE GLU ASP LEU ASP SEQRES 8 A 134 LEU PRO THR LYS LEU LEU ALA ARG GLN GLY ASP LEU ALA SEQRES 9 A 134 GLY ALA ASP ALA LEU THR GLU ASN THR ASP ALA LYS LYS SEQRES 10 A 134 THR GLN LYS PRO LEU ILE GLN GLU VAL GLU THR ASP GLY SEQRES 11 A 134 VAL SER ASN ASN
HELIX 1 1 PRO A 93 ALA A 98 1 6
SHEET 1 A 4 ARG A 5 GLN A 10 0 SHEET 2 A 4 PHE A 14 PHE A 20 -1 O LYS A 18 N SER A 7 SHEET 3 A 4 CYS A 73 LYS A 80 -1 O VAL A 76 N LEU A 17 SHEET 4 A 4 LEU A 57 ILE A 58 -1 N ILE A 58 O ALA A 79 SHEET 1 B 4 ARG A 5 GLN A 10 0 SHEET 2 B 4 PHE A 14 PHE A 20 -1 O LYS A 18 N SER A 7 SHEET 3 B 4 CYS A 73 LYS A 80 -1 O VAL A 76 N LEU A 17 SHEET 4 B 4 THR A 64 ASP A 68 -1 N ASP A 68 O CYS A 73 SHEET 1 C 3 ILE A 34 ILE A 35 0 SHEET 2 C 3 ILE A 40 PHE A 42 -1 O ILE A 41 N ILE A 34 SHEET 3 C 3 LEU A 49 LEU A 51 -1 O LEU A 49 N PHE A 42
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000