10 20 30 40 50 60 70 80 2K8E - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 08-SEP-08 2K8E
TITLE SOLUTION NMR STRUCTURE OF PROTEIN OF UNKNOWN FUNCTION YEGP FROM E. TITLE 2 COLI. ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET EC0640_1_123 TITLE 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET102.
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UPF0339 PROTEIN YEGP; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: YEGP, B2080, JW5339; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P11
KEYWDS YEGP, PROTEIN STRUCTURE INITIATIVE (PSI), NORTHEAST STRUCTURAL KEYWDS 2 GENOMICS CONSORTIUM (NESG), ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS KEYWDS 3 (OCSP), ESCHERICHIA COLI, STRUCTURAL GENOMICS, UNKNOWN FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR C.FARES,A.LEMAK,A.GUTMANAS,M.KARRA,A.H.YEE,A.SEMESI,C.H.ARROWSMITH, AUTHOR 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG),ONTARIO CENTRE FOR AUTHOR 3 STRUCTURAL PROTEOMICS (OCSP)
REVDAT 4 23-MAY-12 2K8E 1 REMARK REVDAT 3 13-JUL-11 2K8E 1 VERSN REVDAT 2 24-FEB-09 2K8E 1 VERSN REVDAT 1 14-OCT-08 2K8E 0
JRNL AUTH C.FARES,A.LEMAK,A.GUTMANAS,M.KARRA,A.YEE,A.SEMESI, JRNL AUTH 2 C.H.ARROWSMITH JRNL TITL SOLUTION STRUCTURE OF PROTEIN YEGP FROM ESCHERICHIA COLI. JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.LEMAK,A.GUTMANAS,S.CHITAYAT,M.KARRA,C.FARES,M.SUNNERHAGEN, REMARK 1 AUTH 2 C.H.ARROWSMITH REMARK 1 TITL A NOVEL STRATEGY FOR NMR RESONANCE ASSIGNMENT AND PROTEIN REMARK 1 TITL 2 STRUCTURE DETERMINATION. REMARK 1 REF J.BIOMOL.NMR V. 49 27 2011 REMARK 1 REFN ISSN 0925-2738 REMARK 1 PMID 21161328 REMARK 1 DOI 10.1007/S10858-010-9458-0
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K8E COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB100805.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 300 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-100% 13C; U-100% 15N] REMARK 210 EC0640, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC; REMARK 210 3D CBCA(CO)NH; 3D HNCO; 3D HNCA; REMARK 210 3D HNCACB; 3D HBHA(CO)NH; 3D HCCH REMARK 210 -TOCSY; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY, NMRPIPE, ABACUS, CYANA, REMARK 210 TALOS REMARK 210 METHOD USED : MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: ALL EXPERIMENTS USING NON-UNIFORM SAMPLING
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA.
REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLN A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 LEU A 5 REMARK 465 PHE A 6 REMARK 465 SER A 7 REMARK 465 ILE A 8 REMARK 465 HIS A 9 REMARK 465 ASN A 10 REMARK 465 PHE A 11 REMARK 465 ASN A 12 REMARK 465 GLN A 13 REMARK 465 ASN A 130
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 120 24.94 -148.29 REMARK 500 2 ALA A 18 74.68 -101.88 REMARK 500 2 THR A 126 92.43 -62.65 REMARK 500 3 HIS A 91 -2.74 69.92 REMARK 500 3 GLN A 98 -78.02 -78.31 REMARK 500 3 MET A 99 122.51 -175.75 REMARK 500 3 THR A 121 92.62 -61.93 REMARK 500 4 SER A 26 -169.46 -120.98 REMARK 500 4 GLN A 68 46.69 -92.55 REMARK 500 4 GLN A 98 -84.59 -75.02 REMARK 500 6 GLN A 68 58.28 -98.66 REMARK 500 6 GLN A 120 38.66 -92.82 REMARK 500 7 THR A 126 89.05 -64.15 REMARK 500 7 SER A 128 90.81 -68.80 REMARK 500 8 ASN A 29 -7.04 86.00 REMARK 500 9 HIS A 91 -3.79 72.30 REMARK 500 9 ILE A 93 98.35 -67.39 REMARK 500 9 GLN A 120 -7.64 67.75 REMARK 500 10 THR A 126 89.83 -60.31 REMARK 500 11 GLN A 98 -78.43 -83.78 REMARK 500 11 THR A 126 93.29 -63.09 REMARK 500 12 ASN A 29 -12.94 77.69 REMARK 500 12 GLN A 98 -77.12 -62.13 REMARK 500 12 MET A 99 134.67 -171.61 REMARK 500 13 GLN A 120 19.78 59.25 REMARK 500 14 GLN A 98 -72.97 -72.50 REMARK 500 14 MET A 99 139.87 -175.87 REMARK 500 15 MET A 99 131.52 174.33 REMARK 500 16 HIS A 91 -1.16 70.73 REMARK 500 17 GLN A 98 -78.59 -60.59 REMARK 500 17 MET A 99 121.97 -173.28 REMARK 500 18 MET A 17 96.85 -69.43 REMARK 500 18 ASN A 29 -22.07 79.77 REMARK 500 19 ALA A 37 -175.92 -69.34 REMARK 500 19 GLN A 120 43.34 -91.04 REMARK 500 20 MET A 99 155.08 176.24 REMARK 500 20 THR A 126 89.47 -63.51 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15943 RELATED DB: BMRB REMARK 900 RELATED ID: ET102 RELATED DB: TARGETDB
DBREF 2K8E A 17 126 UNP P76402 YEGP_ECOLI 1 110
SEQADV 2K8E GLN A 1 UNP P76402 EXPRESSION TAG SEQADV 2K8E GLY A 2 UNP P76402 EXPRESSION TAG SEQADV 2K8E HIS A 3 UNP P76402 EXPRESSION TAG SEQADV 2K8E MET A 4 UNP P76402 EXPRESSION TAG SEQADV 2K8E LEU A 5 UNP P76402 EXPRESSION TAG SEQADV 2K8E PHE A 6 UNP P76402 EXPRESSION TAG SEQADV 2K8E SER A 7 UNP P76402 EXPRESSION TAG SEQADV 2K8E ILE A 8 UNP P76402 EXPRESSION TAG SEQADV 2K8E HIS A 9 UNP P76402 EXPRESSION TAG SEQADV 2K8E ASN A 10 UNP P76402 EXPRESSION TAG SEQADV 2K8E PHE A 11 UNP P76402 EXPRESSION TAG SEQADV 2K8E ASN A 12 UNP P76402 EXPRESSION TAG SEQADV 2K8E GLN A 13 UNP P76402 EXPRESSION TAG SEQADV 2K8E GLY A 14 UNP P76402 EXPRESSION TAG SEQADV 2K8E VAL A 15 UNP P76402 EXPRESSION TAG SEQADV 2K8E ILE A 16 UNP P76402 EXPRESSION TAG SEQADV 2K8E GLY A 127 UNP P76402 EXPRESSION TAG SEQADV 2K8E SER A 128 UNP P76402 EXPRESSION TAG SEQADV 2K8E ASN A 129 UNP P76402 EXPRESSION TAG SEQADV 2K8E ASN A 130 UNP P76402 EXPRESSION TAG
SEQRES 1 A 130 GLN GLY HIS MET LEU PHE SER ILE HIS ASN PHE ASN GLN SEQRES 2 A 130 GLY VAL ILE MET ALA GLY TRP PHE GLU LEU SER LYS SER SEQRES 3 A 130 SER ASP ASN GLN PHE ARG PHE VAL LEU LYS ALA GLY ASN SEQRES 4 A 130 GLY GLU THR ILE LEU THR SER GLU LEU TYR THR SER LYS SEQRES 5 A 130 THR SER ALA GLU LYS GLY ILE ALA SER VAL ARG SER ASN SEQRES 6 A 130 SER PRO GLN GLU GLU ARG TYR GLU LYS LYS THR ALA SER SEQRES 7 A 130 ASN GLY LYS PHE TYR PHE ASN LEU LYS ALA ALA ASN HIS SEQRES 8 A 130 GLN ILE ILE GLY SER SER GLN MET TYR ALA THR ALA GLN SEQRES 9 A 130 SER ARG GLU THR GLY ILE ALA SER VAL LYS ALA ASN GLY SEQRES 10 A 130 THR SER GLN THR VAL LYS ASP ASN THR GLY SER ASN ASN
HELIX 1 1 SER A 51 ASN A 65 1 15 HELIX 2 2 THR A 102 GLY A 117 1 16
SHEET 1 A 4 THR A 42 THR A 45 0 SHEET 2 A 4 PHE A 31 LYS A 36 -1 N LEU A 35 O ILE A 43 SHEET 3 A 4 TRP A 20 LYS A 25 -1 N TRP A 20 O LYS A 36 SHEET 4 A 4 VAL A 122 ASP A 124 1 O LYS A 123 N PHE A 21 SHEET 1 B 3 TYR A 72 ALA A 77 0 SHEET 2 B 3 LYS A 81 LYS A 87 -1 O LYS A 81 N ALA A 77 SHEET 3 B 3 ILE A 93 SER A 96 -1 O GLY A 95 N LEU A 86
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000