10 20 30 40 50 60 70 80 2K8A - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER PROTEIN BINDING 04-SEP-08 2K8A
TITLE SOLUTION STRUCTURE OF A NOVEL UBIQUITIN-BINDING DOMAIN FROM TITLE 2 HUMAN PLAA (PFUC, GLY76-PRO77 TRANS ISOMER)
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE A-2-ACTIVATING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 386-465; COMPND 5 SYNONYM: PLA2P, PLAP; COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLAA, PLAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET-32M
KEYWDS UBIQUITIN BINDING, WD REPEAT, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 15
AUTHOR Q.S.FU,C.J.ZHOU,H.C.GAO,D.H.LIN,H.Y.HU
REVDAT 3 28-JUL-09 2K8A 1 JRNL REVDAT 2 14-JUL-09 2K8A 1 JRNL REVDAT 1 05-MAY-09 2K8A 0
JRNL AUTH Q.S.FU,C.J.ZHOU,H.C.GAO,Y.J.JIANG,Z.R.ZHOU,J.HONG, JRNL AUTH 2 W.M.YAO,A.X.SONG,D.H.LIN,H.Y.HU JRNL TITL STRUCTURAL BASIS FOR UBIQUITIN RECOGNITION BY A JRNL TITL 2 NOVEL DOMAIN FROM HUMAN PHOSPHOLIPASE A2-ACTIVATING JRNL TITL 3 PROTEIN. JRNL REF J.BIOL.CHEM. V. 284 19043 2009 JRNL REFN ISSN 0021-9258 JRNL PMID 19423704 JRNL DOI 10.1074/JBC.M109.009126
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES WERE CALCULATED WITH REMARK 3 ARIA/CNS USING TORSION ANGLE DYNAMICS
REMARK 4 REMARK 4 2K8A COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-08. REMARK 100 THE RCSB ID CODE IS RCSB100801.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PFUC_TRANS, 90% H2O, 10% D2O; REMARK 210 1 MM [U-100% 13C; U-100% 15N] REMARK 210 PFUC_TRANS, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D CBCA(CO) REMARK 210 NH; 3D C(CO)NH; 3D HNCO; 3D REMARK 210 HNCACB; 3D H(CCO)NH; 3D HNHA; REMARK 210 3D 1H-15N NOESY; 3D HCCH- REMARK 210 TOCSY; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : 15 STRUCTURES FOR LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 54 -62.95 -91.69 REMARK 500 1 GLU A 60 18.44 56.32 REMARK 500 1 ASP A 65 -71.71 -58.76 REMARK 500 1 VAL A 72 -38.48 -161.72 REMARK 500 1 LYS A 119 -84.18 -81.14 REMARK 500 1 MET A 122 -61.10 -92.07 REMARK 500 1 LEU A 125 -91.71 64.83 REMARK 500 2 GLU A 60 19.10 55.39 REMARK 500 2 ASP A 65 -72.16 -57.15 REMARK 500 2 VAL A 72 -50.97 -148.12 REMARK 500 2 ASP A 101 61.89 64.74 REMARK 500 2 MET A 122 -61.76 70.11 REMARK 500 2 LEU A 123 -66.16 -105.03 REMARK 500 3 GLN A 52 -169.16 -126.01 REMARK 500 3 VAL A 72 -50.82 -133.04 REMARK 500 3 ASP A 101 61.84 64.64 REMARK 500 3 LYS A 119 -76.06 -66.16 REMARK 500 3 GLN A 121 95.65 -46.59 REMARK 500 3 MET A 122 -60.38 69.35 REMARK 500 3 LEU A 123 -61.03 -96.48 REMARK 500 3 LEU A 125 -83.70 -78.00 REMARK 500 3 ASN A 127 121.83 -173.60 REMARK 500 4 GLN A 51 -69.26 -96.24 REMARK 500 4 GLU A 60 17.51 58.70 REMARK 500 4 ASP A 65 -70.59 -60.39 REMARK 500 4 VAL A 72 -47.51 -159.81 REMARK 500 4 ASP A 101 63.32 61.33 REMARK 500 4 LYS A 119 -76.15 -66.93 REMARK 500 4 MET A 122 -47.60 176.70 REMARK 500 4 LEU A 123 -67.78 -159.88 REMARK 500 4 ASN A 127 -56.47 106.69 REMARK 500 5 GLU A 60 15.92 59.47 REMARK 500 5 ASP A 65 -72.05 -59.20 REMARK 500 5 MET A 122 -64.98 70.21 REMARK 500 5 LEU A 123 -85.83 -98.01 REMARK 500 5 LEU A 125 -156.83 58.43 REMARK 500 6 ASP A 65 -72.20 -60.61 REMARK 500 6 VAL A 72 -49.00 -153.67 REMARK 500 6 ASP A 101 63.85 61.26 REMARK 500 6 MET A 122 -68.81 75.01 REMARK 500 6 LEU A 123 -79.47 -95.45 REMARK 500 7 ASN A 50 -81.95 73.65 REMARK 500 7 ASP A 65 -72.26 -58.12 REMARK 500 7 VAL A 72 -45.61 -144.11 REMARK 500 7 ASP A 101 60.16 62.09 REMARK 500 7 MET A 122 96.20 69.76 REMARK 500 7 LEU A 123 -69.14 70.83 REMARK 500 7 ASN A 127 122.71 71.48 REMARK 500 8 GLN A 52 75.30 58.07 REMARK 500 8 VAL A 72 -37.44 -130.94 REMARK 500 8 GLN A 121 -74.05 65.81 REMARK 500 8 LEU A 125 -169.64 66.11 REMARK 500 9 VAL A 72 -33.84 -177.11 REMARK 500 9 ASP A 101 63.02 61.29 REMARK 500 9 MET A 122 -65.83 -141.39 REMARK 500 9 LEU A 125 -77.36 70.86 REMARK 500 9 ASN A 127 70.76 60.70 REMARK 500 10 THR A 53 54.23 -153.26 REMARK 500 10 ASP A 65 -71.69 -67.87 REMARK 500 10 VAL A 72 -37.52 -144.63 REMARK 500 10 LYS A 119 -83.93 -73.37 REMARK 500 10 LEU A 123 -55.60 -151.92 REMARK 500 10 LEU A 125 -72.16 68.32 REMARK 500 11 ASN A 50 101.46 73.61 REMARK 500 11 GLN A 52 -33.89 176.52 REMARK 500 11 THR A 53 48.05 -141.36 REMARK 500 11 VAL A 72 -35.12 -166.40 REMARK 500 11 MET A 122 104.92 72.49 REMARK 500 11 LEU A 123 -18.01 73.71 REMARK 500 11 ASN A 127 78.56 59.63 REMARK 500 12 GLN A 51 -74.71 -157.84 REMARK 500 12 GLN A 52 174.54 67.75 REMARK 500 12 ASP A 65 -72.68 -60.96 REMARK 500 12 VAL A 72 -38.43 -167.39 REMARK 500 12 LYS A 119 -77.78 -97.30 REMARK 500 12 GLN A 121 84.98 59.91 REMARK 500 12 MET A 122 110.25 78.52 REMARK 500 12 LEU A 123 -74.54 73.09 REMARK 500 12 LEU A 125 -84.25 -104.74 REMARK 500 13 GLN A 51 -162.97 -122.46 REMARK 500 13 THR A 53 104.47 47.14 REMARK 500 13 GLU A 60 17.79 55.01 REMARK 500 13 VAL A 72 -42.73 -170.98 REMARK 500 13 LYS A 119 -73.71 -53.00 REMARK 500 13 GLN A 121 100.12 176.86 REMARK 500 13 MET A 122 -49.98 74.19 REMARK 500 13 LEU A 125 -163.17 -115.24 REMARK 500 14 ASN A 50 -43.85 -136.22 REMARK 500 14 THR A 53 -25.24 173.92 REMARK 500 14 GLU A 60 17.00 55.66 REMARK 500 14 ASP A 65 -70.14 -56.65 REMARK 500 14 VAL A 72 -76.54 -126.24 REMARK 500 14 ASP A 101 60.58 60.02 REMARK 500 14 LYS A 119 -86.27 -115.87 REMARK 500 14 GLN A 121 -72.21 64.68 REMARK 500 14 LEU A 123 -47.67 73.92 REMARK 500 14 LEU A 125 -177.88 62.37 REMARK 500 14 ASN A 127 96.88 67.49 REMARK 500 15 ASN A 50 34.31 -95.24 REMARK 500 15 THR A 53 68.87 -108.95 REMARK 500 15 VAL A 72 -44.63 -134.49 REMARK 500 15 GLN A 121 -62.94 -106.99 REMARK 500 15 LEU A 123 -73.17 -95.04 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2K89 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF UBIQUITIN-BINDING DOMAIN PLAA (PFUC, REMARK 900 GLY76-PRO77 CIS ISOMER) REMARK 900 RELATED ID: 2K8B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PLAA FAMILY UBIQUITIN BINDING DOMAIN REMARK 900 (PFUC) CIS ISOMER IN COMPLEX WITH UBIQUITIN REMARK 900 RELATED ID: 2K8C RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF PLAA FAMILY UBIQUITIN BINDING DOMAIN REMARK 900 (PFUC) TRANS ISOMER IN COMPLEX WITH UBIQUITIN
DBREF 2K8A A 49 128 UNP Q9Y263 PLAP_HUMAN 386 465
SEQRES 1 A 80 ALA ASN GLN GLN THR SER GLY LYS VAL LEU TYR GLU GLY SEQRES 2 A 80 LYS GLU PHE ASP TYR VAL PHE SER ILE ASP VAL ASN GLU SEQRES 3 A 80 GLY GLY PRO SER TYR LYS LEU PRO TYR ASN THR SER ASP SEQRES 4 A 80 ASP PRO TRP LEU THR ALA TYR ASN PHE LEU GLN LYS ASN SEQRES 5 A 80 ASP LEU ASN PRO MET PHE LEU ASP GLN VAL ALA LYS PHE SEQRES 6 A 80 ILE ILE ASP ASN THR LYS GLY GLN MET LEU GLY LEU GLY SEQRES 7 A 80 ASN PRO
HELIX 1 1 ASP A 88 ASP A 101 1 14 HELIX 2 2 MET A 105 LYS A 119 1 15
SHEET 1 A 2 VAL A 57 TYR A 59 0 SHEET 2 A 2 LYS A 62 PHE A 64 -1 O LYS A 62 N TYR A 59 SHEET 1 B 2 TYR A 66 ILE A 70 0 SHEET 2 B 2 TYR A 79 TYR A 83 -1 O TYR A 79 N ILE A 70
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000