10 20 30 40 50 60 70 80 2K7R - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER REPLICATION 19-AUG-08 2K7R
TITLE N-TERMINAL DOMAIN OF THE BACILLUS SUBTILIS HELICASE-LOADING TITLE 2 PROTEIN DNAI
COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRIMOSOMAL PROTEIN DNAI; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-106; COMPND 5 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: DNAI, YTXA, BSU28980; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PKL1272
KEYWDS DNAI N-TERMINAL DOMAIN, HELICASE-LOADING PROTEIN, ATP- KEYWDS 2 BINDING, DNA REPLICATION, NUCLEOTIDE-BINDING, PRIMOSOME
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR K.V.LOSCHA,K.JAUDZEMS,C.IOANNOU,X.C.SU,F.R.HILL,G.OTTING, AUTHOR 2 N.E.DIXON,E.LIEPINSH
REVDAT 3 12-MAY-09 2K7R 1 JRNL REVDAT 2 10-MAR-09 2K7R 1 JRNL REVDAT 1 03-MAR-09 2K7R 0
JRNL AUTH K.V.LOSCHA,K.JAUDZEMS,C.IOANNOU,X.C.SU,F.R.HILL, JRNL AUTH 2 G.OTTING,N.E.DIXON,E.LIEPINSH JRNL TITL A NOVEL ZINC-BINDING FOLD IN THE HELICASE JRNL TITL 2 INTERACTION DOMAIN OF THE BACILLUS SUBTILIS DNAI JRNL TITL 3 HELICASE LOADER JRNL REF NUCLEIC ACIDS RES. V. 37 2395 2009 JRNL REFN ISSN 0305-1048 JRNL PMID 19255093 JRNL DOI 10.1093/NAR/GKP092
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.2 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES, READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K7R COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 21-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB100782.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM [U-95% 15N] DNAI, 0.5MM REMARK 210 ZINC ION, 10% [U-99% 2H] D2O, REMARK 210 90% H2O, 10MM SODIUM REMARK 210 PHOSPHATE, 0.1% SODIUM AZIDE, REMARK 210 100MM SODIUM CHLORIDE, 1MM REMARK 210 DTT, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 1H-15N NOESY; 3D HNHA; 2D REMARK 210 1H-1H NOESY; 2D DQF-COSY; 2D REMARK 210 1H-1H TOCSY; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, MOLMOL, NMRPIPE, REMARK 210 PROCHECK, XEASY, TOPSPIN REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 66 -160.89 -102.55 REMARK 500 1 ASP A 73 86.21 -68.16 REMARK 500 1 LEU A 80 49.19 -87.12 REMARK 500 2 GLN A 9 -154.64 -141.50 REMARK 500 2 ARG A 14 87.53 -154.45 REMARK 500 2 ASN A 66 -159.93 -92.22 REMARK 500 3 THR A 12 39.87 -79.39 REMARK 500 3 GLN A 63 -167.15 -74.36 REMARK 500 3 ASN A 66 -160.09 -122.78 REMARK 500 3 ASN A 77 21.81 -79.08 REMARK 500 4 ASN A 66 -163.18 -102.19 REMARK 500 5 PRO A 3 91.40 -68.09 REMARK 500 5 GLN A 9 42.10 -83.77 REMARK 500 5 ARG A 14 78.62 -155.04 REMARK 500 5 ASN A 77 37.70 -92.26 REMARK 500 6 GLN A 9 21.34 -140.55 REMARK 500 7 LEU A 8 -60.52 -90.40 REMARK 500 7 CYS A 70 -0.79 -140.17 REMARK 500 7 ASN A 75 80.60 -69.65 REMARK 500 7 ARG A 105 28.72 45.86 REMARK 500 8 PRO A 15 91.39 -62.73 REMARK 500 9 ASN A 66 -165.65 -112.63 REMARK 500 9 LEU A 79 -74.46 -74.06 REMARK 500 10 PRO A 3 95.04 -68.32 REMARK 500 10 SER A 64 118.37 -178.84 REMARK 500 10 ASN A 66 -157.81 -115.71 REMARK 500 10 CYS A 70 19.25 -151.64 REMARK 500 10 CYS A 76 26.18 -152.07 REMARK 500 11 PRO A 3 105.06 -59.00 REMARK 500 12 CYS A 70 -44.28 -132.24 REMARK 500 12 LEU A 79 -79.22 -75.26 REMARK 500 13 PRO A 3 86.86 -66.54 REMARK 500 13 CYS A 70 -28.19 -143.67 REMARK 500 13 ASP A 73 104.36 -56.13 REMARK 500 14 GLU A 2 86.28 -169.76 REMARK 500 14 PRO A 3 85.92 -68.51 REMARK 500 14 CYS A 70 -38.92 -134.77 REMARK 500 14 PRO A 102 5.57 -67.83 REMARK 500 15 ARG A 14 85.80 -154.89 REMARK 500 16 ASN A 66 -157.28 -138.52 REMARK 500 16 ASN A 77 77.78 -116.29 REMARK 500 17 CYS A 70 -44.51 -145.51 REMARK 500 18 ARG A 6 34.22 -96.00 REMARK 500 18 ASN A 78 149.15 -176.27 REMARK 500 18 ARG A 105 39.14 -83.21 REMARK 500 19 GLN A 63 -175.16 -65.81 REMARK 500 19 SER A 64 102.60 -59.92 REMARK 500 19 ASN A 66 -156.20 -124.94 REMARK 500 19 LEU A 79 -79.25 -89.60 REMARK 500 20 PRO A 3 99.04 -65.91 REMARK 500 20 GLN A 9 -61.15 -129.86 REMARK 500 REMARK 500 REMARK: NULL
REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 129 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 67 SG REMARK 620 2 CYS A 70 SG 109.1 REMARK 620 3 HIS A 84 NE2 108.3 113.4 REMARK 620 4 CYS A 101 SG 107.3 109.8 108.7 REMARK 620 N 1 2 3
REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 129
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15926 RELATED DB: BMRB
DBREF 2K7R A 1 106 UNP P06567 DNAI_BACSU 1 106
SEQRES 1 A 106 MET GLU PRO ILE GLY ARG SER LEU GLN GLY VAL THR GLY SEQRES 2 A 106 ARG PRO ASP PHE GLN LYS ARG LEU GLU GLN MET LYS GLU SEQRES 3 A 106 LYS VAL MET LYS ASP GLN ASP VAL GLN ALA PHE LEU LYS SEQRES 4 A 106 GLU ASN GLU GLU VAL ILE ASP GLN LYS MET ILE GLU LYS SEQRES 5 A 106 SER LEU ASN LYS LEU TYR GLU TYR ILE GLU GLN SER LYS SEQRES 6 A 106 ASN CYS SER TYR CYS SER GLU ASP GLU ASN CYS ASN ASN SEQRES 7 A 106 LEU LEU GLU GLY TYR HIS PRO LYS LEU VAL VAL ASN GLY SEQRES 8 A 106 ARG SER ILE ASP ILE GLU TYR TYR GLU CYS PRO VAL LYS SEQRES 9 A 106 ARG LYS
HET ZN A 129 1
HETNAM ZN ZINC ION
FORMUL 2 ZN ZN 2+
HELIX 1 1 PRO A 15 MET A 29 1 15 HELIX 2 2 ASP A 31 ASN A 41 1 11 HELIX 3 3 ASP A 46 SER A 53 1 8 HELIX 4 4 SER A 53 GLN A 63 1 11 HELIX 5 5 PRO A 102 ARG A 105 5 4
SHEET 1 A 2 TYR A 83 ASN A 90 0 SHEET 2 A 2 SER A 93 GLU A 100 -1 O ASP A 95 N VAL A 88
LINK SG CYS A 67 ZN ZN A 129 1555 1555 2.30 LINK SG CYS A 70 ZN ZN A 129 1555 1555 2.30 LINK NE2 HIS A 84 ZN ZN A 129 1555 1555 2.00 LINK SG CYS A 101 ZN ZN A 129 1555 1555 2.30
SITE 1 AC1 5 LYS A 65 ASN A 66 CYS A 67 GLY A 82 SITE 2 AC1 5 CYS A 101
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000