10 20 30 40 50 60 70 80 2K7H - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER ALLERGEN 11-AUG-08 2K7H
TITLE NMR SOLUTION STRUCTURE OF SOYBEAN ALLERGEN GLY M 4
COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-INDUCED PROTEIN SAM22; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 2-158; COMPND 5 SYNONYM: STARVATION-ASSOCIATED MESSAGE 22, ALLERGEN GLY M COMPND 6 4; COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GLYCINE MAX; SOURCE 3 ORGANISM_COMMON: SOYBEAN; SOURCE 4 ORGANISM_TAXID: 3847; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET11A
KEYWDS ALLERGENS, NMR, SOYBEAN, PROTEIN, ALLERGEN, PATHOGENESIS- KEYWDS 2 RELATED PROTEIN, PLANT DEFENSE
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR H.BERKNER,P.NEUDECKER,D.MITTAG,B.K.BALLMER-WEBER, AUTHOR 2 K.SCHWEIMER,S.VIETHS,P.ROESCH
REVDAT 1 05-MAY-09 2K7H 0
JRNL AUTH H.BERKNER,P.NEUDECKER,D.MITTAG,B.K.BALLMER-WEBER, JRNL AUTH 2 K.SCHWEIMER,S.VIETHS JRNL TITL CROSS-REACTIVITY OF POLLEN AND FOOD ALLERGENS: JRNL TITL 2 SOYBEAN GLY M 4 IS A MEMBER OF THE BET V 1 JRNL TITL 3 SUPERFAMILY AND CLOSELY RESEMBLES YELLOW LUPINE JRNL TITL 4 PROTEINS JRNL REF BIOSCI.REP. V. 29 183 2009 JRNL REFN ISSN 0144-8463 JRNL PMID 18834331 JRNL DOI 10.1042/BSR20080117
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR_NIH 1.2.1 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K7H COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB100772.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM GLY M 4, 10-50MM REMARK 210 POTASSIUM PHOSPHATE, 0.02% REMARK 210 SODIUM AZIDE, 100% D2O; 0.7- REMARK 210 1.5MM [U-99% 15N] GLY M 4, 10- REMARK 210 50MM POTASSIUM PHOSPHATE, REMARK 210 0.02% SODIUM AZIDE, 90% H2O/ REMARK 210 10% D2O; 0.7-1.5MM [U-99% 13C; REMARK 210 U-99% 15N] GLY M 4, 10-50MM REMARK 210 POTASSIUM PHOSPHATE, 0.02% REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H NOESY; 2D 1H-15N REMARK 210 HSQC; 3D HNHA; 3D 1H-15N REMARK 210 TOCSY; 3D 1H-15N NOESY; 3D NNH REMARK 210 NOESY; 3D HNCA; 3D CBCA(CO)NH; REMARK 210 3D H(CCO)NH; 2D 1H-13C HSQC; REMARK 210 3D HCCH-COSY; 3D 1H-13C NOESY; REMARK 210 3D CNH NOESY; 3D HNCO; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D HCCH-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : DRX; AVANCE; DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.2.2, X-PLOR_NIH REMARK 210 1.2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 25 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 72 147.20 -176.97 REMARK 500 2 ASP A 60 23.74 48.13 REMARK 500 5 ASN A 46 13.21 -140.66 REMARK 500 7 LYS A 96 159.21 179.74 REMARK 500 9 ASP A 60 27.73 49.66 REMARK 500 10 LEU A 78 25.98 47.75 REMARK 500 11 SER A 36 30.10 -91.51 REMARK 500 12 LEU A 78 27.62 44.35 REMARK 500 13 SER A 72 145.40 179.40 REMARK 500 14 SER A 72 140.50 -173.62 REMARK 500 15 SER A 72 146.18 -171.47 REMARK 500 16 VAL A 43 -79.28 -80.45 REMARK 500 16 SER A 72 134.64 -177.14 REMARK 500 16 LYS A 96 159.62 179.64 REMARK 500 17 ASP A 60 22.20 48.46 REMARK 500 18 SER A 72 132.92 178.08 REMARK 500 19 ASP A 60 26.28 44.13 REMARK 500 19 SER A 72 144.88 178.27 REMARK 500 19 LEU A 78 29.31 47.88 REMARK 500 20 ASP A 60 24.61 49.74 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5605 RELATED DB: BMRB
DBREF 2K7H A 1 157 UNP P26987 SAM22_SOYBN 2 158
SEQRES 1 A 157 GLY VAL PHE THR PHE GLU ASP GLU ILE ASN SER PRO VAL SEQRES 2 A 157 ALA PRO ALA THR LEU TYR LYS ALA LEU VAL THR ASP ALA SEQRES 3 A 157 ASP ASN VAL ILE PRO LYS ALA LEU ASP SER PHE LYS SER SEQRES 4 A 157 VAL GLU ASN VAL GLU GLY ASN GLY GLY PRO GLY THR ILE SEQRES 5 A 157 LYS LYS ILE THR PHE LEU GLU ASP GLY GLU THR LYS PHE SEQRES 6 A 157 VAL LEU HIS LYS ILE GLU SER ILE ASP GLU ALA ASN LEU SEQRES 7 A 157 GLY TYR SER TYR SER VAL VAL GLY GLY ALA ALA LEU PRO SEQRES 8 A 157 ASP THR ALA GLU LYS ILE THR PHE ASP SER LYS LEU VAL SEQRES 9 A 157 ALA GLY PRO ASN GLY GLY SER ALA GLY LYS LEU THR VAL SEQRES 10 A 157 LYS TYR GLU THR LYS GLY ASP ALA GLU PRO ASN GLN ASP SEQRES 11 A 157 GLU LEU LYS THR GLY LYS ALA LYS ALA ASP ALA LEU PHE SEQRES 12 A 157 LYS ALA ILE GLU ALA TYR LEU LEU ALA HIS PRO ASP TYR SEQRES 13 A 157 ASN
HELIX 1 1 ALA A 14 THR A 24 1 11 HELIX 2 2 ASP A 25 LEU A 34 1 10 HELIX 3 3 ASN A 128 HIS A 153 1 26
SHEET 1 A 7 VAL A 2 SER A 11 0 SHEET 2 A 7 SER A 111 GLU A 120 -1 O VAL A 117 N PHE A 5 SHEET 3 A 7 ILE A 97 LYS A 102 -1 N THR A 98 O LYS A 118 SHEET 4 A 7 GLY A 79 GLY A 87 -1 N TYR A 82 O PHE A 99 SHEET 5 A 7 GLU A 62 ASP A 74 -1 N LEU A 67 O GLY A 86 SHEET 6 A 7 ILE A 52 GLU A 59 -1 N ILE A 55 O VAL A 66 SHEET 7 A 7 PHE A 37 GLU A 44 -1 N GLU A 41 O LYS A 54 SHEET 1 B 3 VAL A 2 SER A 11 0 SHEET 2 B 3 SER A 111 GLU A 120 -1 O VAL A 117 N PHE A 5 SHEET 3 B 3 VAL A 104 ALA A 105 -1 N VAL A 104 O ALA A 112
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000