10 20 30 40 50 60 70 80 2K77 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER CHAPERONE, PROTEIN BINDING 04-AUG-08 2K77
TITLE NMR SOLUTION STRUCTURE OF THE BACILLUS SUBTILIS CLPC N- TITLE 2 DOMAIN
COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEGATIVE REGULATOR OF GENETIC COMPETENCE COMPND 3 CLPC/MECB; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: N-TERMINAL DOMAIN (UNP RESIDUES 1-145); COMPND 6 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: CLPC, MECB, BSU00860; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET-16B
KEYWDS HSP100/CLP/AAA+, N-DOMAIN, REPEAT, N-CLPCR, KEYWDS 2 CHAPERONE/PROTEASE, COMPETENCE, CHAPERONE, PROTEIN BINDING
EXPDTA SOLUTION NMR
NUMMDL 30
AUTHOR D.J.KOJETIN,P.D.MCLAUGHLIN,R.J.THOMPSON,M.RANCE,J.CAVANAGH
REVDAT 1 28-APR-09 2K77 0
JRNL AUTH D.J.KOJETIN,P.D.MCLAUGHLIN,R.J.THOMPSON,D.DUBNAU, JRNL AUTH 2 P.PREPIAK,M.RANCE,J.CAVANAGH JRNL TITL STRUCTURAL AND MOTIONAL CONTRIBUTIONS OF THE JRNL TITL 2 BACILLUS SUBTILIS CLPC N-DOMAIN TO ADAPTOR PROTEIN JRNL TITL 3 INTERACTIONS. JRNL REF J.MOL.BIOL. V. 387 639 2009 JRNL REFN ISSN 0022-2836 JRNL PMID 19361434 JRNL DOI 10.1016/J.JMB.2009.01.046
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : AMBER 9 REMARK 3 AUTHORS : CASE, DARDEN, CHEATHAM, III, SIMMERLING, WANG, REMARK 3 DUKE, LUO, ... AND KOLLM REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 200 INITIAL STRUCTURES CALCULATED REMARK 3 WITH ARIA 1.2/CNS 1.1 USING NOE, DIHEDRAL, AND RDC RESTRAINTS, REMARK 3 100 LOWEST-ENERGY STRUCTURES WERE REFINED IN AMBER 9 USING THE REMARK 3 GB SOLVENT MODEL, 30 LOWEST-ENERGY STRUCTURES WERE DEPOSITED
REMARK 4 REMARK 4 2K77 COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-08. REMARK 100 THE RCSB ID CODE IS RCSB100762.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 305 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5-1.0 MM [U-13C; U-15N] N- REMARK 210 CLPCR, 90% H2O/10% D2O; 0.5- REMARK 210 1.0 MM [U-15N] N-CLPCR, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D [1H,1H]-NOESY; 3D [1H,15N, REMARK 210 1H]-NOESY-HSQC; 3D [1H,13C,1H]-NOESY-HSQC; 2D [1H,13C]-NOESY- REMARK 210 HSQC; 4D [1H,13C]-HMQC-NOESY-[1H,13C]-HMQC; 4D [1H,13C]-HMQC- REMARK 210 NOESY-[1H,15N]-HSQC; 2D 1H-15N HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : ARIA 1.2, RELAX 1.2, CNS 1.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 HIS A 0
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 1 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 1 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 1 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 2 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 2 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 3 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 4 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 4 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 4 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 5 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 5 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 5 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 5 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 6 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 6 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 6 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 7 ARG A 5 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 7 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 7 ARG A 40 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 7 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 7 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 7 ARG A 114 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 8 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 8 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 8 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 9 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 9 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 10 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 10 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 10 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 11 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 11 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 12 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 13 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 13 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 13 ARG A 83 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 13 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 14 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 14 ARG A 40 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 14 ARG A 96 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 14 ARG A 135 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 15 ARG A 9 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 98 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 77 159.80 62.55 REMARK 500 2 SER A 101 -23.73 63.81 REMARK 500 3 SER A 75 81.71 47.48 REMARK 500 4 GLU A 73 109.86 -41.50 REMARK 500 6 MET A 2 172.96 51.70 REMARK 500 6 ASN A 27 10.03 54.04 REMARK 500 7 MET A 2 -178.64 51.67 REMARK 500 7 ARG A 70 74.56 49.61 REMARK 500 7 SER A 101 -0.84 62.31 REMARK 500 8 ASN A 27 13.24 53.28 REMARK 500 8 GLN A 72 43.59 -144.53 REMARK 500 9 SER A 75 67.69 -65.62 REMARK 500 9 THR A 77 102.58 54.76 REMARK 500 10 GLN A 72 81.60 -164.75 REMARK 500 12 ASN A 27 32.00 -92.36 REMARK 500 12 SER A 101 -21.07 61.38 REMARK 500 13 SER A 75 -165.06 -167.38 REMARK 500 13 THR A 77 91.38 63.69 REMARK 500 14 GLN A 72 53.54 -140.03 REMARK 500 15 GLN A 72 6.68 -151.12 REMARK 500 16 MET A 2 177.20 52.29 REMARK 500 16 ARG A 70 33.31 -86.58 REMARK 500 16 SER A 101 -27.25 65.27 REMARK 500 17 GLN A 72 54.98 -90.91 REMARK 500 17 MET A 74 -31.73 -144.21 REMARK 500 17 THR A 77 100.14 64.76 REMARK 500 18 GLU A 73 -179.86 -60.10 REMARK 500 18 GLN A 76 -38.25 -155.32 REMARK 500 19 MET A 2 158.36 63.57 REMARK 500 19 ASN A 27 10.08 54.66 REMARK 500 19 GLU A 73 70.77 37.26 REMARK 500 19 THR A 77 130.92 64.32 REMARK 500 20 SER A 75 81.96 -66.29 REMARK 500 20 THR A 77 70.64 42.77 REMARK 500 21 SER A 75 83.74 57.64 REMARK 500 24 GLN A 72 48.08 -78.84 REMARK 500 25 GLN A 72 74.90 -156.57 REMARK 500 27 ARG A 70 -58.41 55.96 REMARK 500 28 ASN A 27 23.30 45.60 REMARK 500 28 GLN A 72 -43.89 -140.75 REMARK 500 28 GLU A 73 72.61 45.61 REMARK 500 29 MET A 2 172.15 58.80 REMARK 500 29 GLN A 76 -49.52 -158.04 REMARK 500 30 ASN A 27 33.37 -84.70 REMARK 500 30 THR A 77 167.18 59.99 REMARK 500 30 SER A 101 15.93 57.12 REMARK 500 30 GLU A 117 -31.61 -130.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 ARG A 114 0.08 SIDE_CHAIN REMARK 500 7 ARG A 23 0.08 SIDE_CHAIN REMARK 500 7 ARG A 114 0.09 SIDE_CHAIN REMARK 500 14 ARG A 40 0.08 SIDE_CHAIN REMARK 500 18 ARG A 40 0.10 SIDE_CHAIN REMARK 500 18 ARG A 114 0.08 SIDE_CHAIN REMARK 500 27 ARG A 114 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 15910 RELATED DB: BMRB
DBREF 2K77 A 1 145 UNP P37571 CLPC_BACSU 1 145
SEQADV 2K77 HIS A 0 UNP P37571 EXPRESSION TAG
SEQRES 1 A 146 HIS MET MET PHE GLY ARG PHE THR GLU ARG ALA GLN LYS SEQRES 2 A 146 VAL LEU ALA LEU ALA GLN GLU GLU ALA LEU ARG LEU GLY SEQRES 3 A 146 HIS ASN ASN ILE GLY THR GLU HIS ILE LEU LEU GLY LEU SEQRES 4 A 146 VAL ARG GLU GLY GLU GLY ILE ALA ALA LYS ALA LEU GLN SEQRES 5 A 146 ALA LEU GLY LEU GLY SER GLU LYS ILE GLN LYS GLU VAL SEQRES 6 A 146 GLU SER LEU ILE GLY ARG GLY GLN GLU MET SER GLN THR SEQRES 7 A 146 ILE HIS TYR THR PRO ARG ALA LYS LYS VAL ILE GLU LEU SEQRES 8 A 146 SER MET ASP GLU ALA ARG LYS LEU GLY HIS SER TYR VAL SEQRES 9 A 146 GLY THR GLU HIS ILE LEU LEU GLY LEU ILE ARG GLU GLY SEQRES 10 A 146 GLU GLY VAL ALA ALA ARG VAL LEU ASN ASN LEU GLY VAL SEQRES 11 A 146 SER LEU ASN LYS ALA ARG GLN GLN VAL LEU GLN LEU LEU SEQRES 12 A 146 GLY SER ASN
HELIX 1 1 THR A 7 LEU A 24 1 18 HELIX 2 2 GLY A 30 GLY A 42 1 13 HELIX 3 3 GLY A 44 LEU A 53 1 10 HELIX 4 4 GLY A 56 GLY A 69 1 14 HELIX 5 5 THR A 81 GLY A 99 1 19 HELIX 6 6 GLY A 104 GLY A 116 1 13 HELIX 7 7 GLY A 118 GLY A 128 1 11 HELIX 8 8 SER A 130 LEU A 142 1 13
SHEET 1 A 2 ASN A 28 ILE A 29 0 SHEET 2 A 2 HIS A 79 TYR A 80 1 O HIS A 79 N ILE A 29
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000