10 20 30 40 50 60 70 80 2K6G - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER DNA BINDING PROTEIN 09-JUL-08 2K6G
TITLE SOLUTION STRUCTURE OF THE DNA BINDING BRCT DOMAIN FROM THE TITLE 2 LARGE SUBUNIT OF HUMAN REPLICATION FACTOR C
COMPND MOL_ID: 1; COMPND 2 MOLECULE: REPLICATION FACTOR C SUBUNIT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: BRCT DOMAIN; COMPND 5 SYNONYM: ACTIVATOR 1 SUBUNIT 1, REPLICATION FACTOR C LARGE COMPND 6 SUBUNIT, RF-C 140 KDA SUBUNIT, ACTIVATOR 1 140 KDA SUBUNIT, COMPND 7 A1 140 KDA SUBUNIT, ACTIVATOR 1 LARGE SUBUNIT, DNA-BINDING COMPND 8 PROTEIN PO-GA; COMPND 9 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RFC1, RFC140; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET20B
KEYWDS PROTEIN, BRCT, DNA BINDING, REPLICATION FACTOR C, ACTIVATOR, KEYWDS 2 ALTERNATIVE SPLICING, ATP-BINDING, DNA REPLICATION, DNA- KEYWDS 3 BINDING, METAL-BINDING, NUCLEOTIDE-BINDING, NUCLEUS, KEYWDS 4 PHOSPHOPROTEIN, POLYMORPHISM, TRANSCRIPTION, TRANSCRIPTION KEYWDS 5 REGULATION, ZINC, ZINC-FINGER, DNA BINDING PROTEIN
EXPDTA SOLUTION NMR
NUMMDL 24
AUTHOR M.KOBAYASHI,G.SIEGAL,E.AB,A.M.J.J.BONVIN
REVDAT 1 22-SEP-09 2K6G 0
JRNL AUTH M.KOBAYASHI,E.AB,A.M.J.J.BONVIN,G.SIEGAL JRNL TITL SOLUTION STRUCTURE OF THE DNA BOUND BRCT DOMAIN JRNL TITL 2 FROM HUMAN REPLICATION FACTOR C P140 JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: RECOORD SCRIPTS USING CNS
REMARK 4 REMARK 4 2K6G COMPLIES WITH FORMAT V. 3.20, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB100735.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 0.5 MM [U-15N; U-13C] RFC REMARK 210 P140 BRCT REGION, 0.5 MM SELF REMARK 210 - ANNEALING HAIRPIN - DSDNA, REMARK 210 20 MM TRIS-HCL, 5 MM NACL, 1 REMARK 210 MM DTT, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C REMARK 210 HSQC; 3D CBCA(CO)NH; 3D HNCA; REMARK 210 3D HNCACB; CCH-TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY; 2D REMARK 210 1H-1H NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 180 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : BB CONFORMATION Z-SCORE REMARK 210 (WHATIF) REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 391 98.69 -64.40 REMARK 500 1 SER A 396 -43.31 -131.16 REMARK 500 1 ILE A 399 93.13 57.47 REMARK 500 1 LEU A 418 -157.24 -82.00 REMARK 500 1 SER A 420 99.63 -161.17 REMARK 500 1 ASN A 446 -45.87 70.56 REMARK 500 2 LYS A 397 -30.61 -150.02 REMARK 500 2 ILE A 399 81.80 75.00 REMARK 500 2 LEU A 418 -152.03 -90.03 REMARK 500 2 ASN A 446 -34.26 71.92 REMARK 500 3 THR A 377 92.03 66.40 REMARK 500 3 PRO A 391 96.79 -65.38 REMARK 500 3 GLU A 398 -152.98 -126.82 REMARK 500 3 ASN A 446 -29.92 69.67 REMARK 500 3 ASP A 471 -167.17 -113.84 REMARK 500 4 ARG A 376 95.49 66.15 REMARK 500 4 ALA A 393 33.25 -97.90 REMARK 500 4 GLU A 398 -75.88 -56.33 REMARK 500 4 ILE A 399 97.51 67.54 REMARK 500 4 ALA A 403 109.82 -58.47 REMARK 500 4 ASN A 446 -47.42 86.67 REMARK 500 5 ASN A 378 179.15 66.24 REMARK 500 5 GLU A 389 -164.68 -116.96 REMARK 500 5 GLU A 398 -75.41 -75.09 REMARK 500 5 ILE A 399 98.11 66.35 REMARK 500 5 ASN A 446 -24.06 68.60 REMARK 500 6 GLU A 389 74.20 51.98 REMARK 500 6 GLU A 398 -147.61 -96.58 REMARK 500 6 GLU A 419 37.41 -96.95 REMARK 500 6 SER A 420 -162.85 -165.51 REMARK 500 6 ASN A 446 -61.84 69.36 REMARK 500 7 ALA A 393 31.65 -95.20 REMARK 500 7 SER A 396 -36.70 -158.84 REMARK 500 7 ILE A 399 79.85 56.54 REMARK 500 7 ASN A 446 -45.20 71.53 REMARK 500 8 ARG A 388 -58.42 60.28 REMARK 500 8 ILE A 399 101.28 62.70 REMARK 500 8 GLU A 419 51.22 -98.75 REMARK 500 8 SER A 420 -163.17 -177.16 REMARK 500 8 ASN A 446 -45.26 74.74 REMARK 500 8 ASP A 453 106.52 65.96 REMARK 500 9 GLU A 398 -163.48 -118.93 REMARK 500 9 SER A 420 -165.64 -177.21 REMARK 500 9 LYS A 443 44.08 -84.63 REMARK 500 9 LYS A 444 16.71 -162.48 REMARK 500 9 ASN A 446 -42.91 82.59 REMARK 500 10 ASN A 378 -72.78 -143.95 REMARK 500 10 ARG A 388 31.83 -90.76 REMARK 500 10 GLU A 389 -69.83 73.43 REMARK 500 10 ILE A 399 101.22 63.27 REMARK 500 10 LEU A 418 -168.12 -105.13 REMARK 500 10 ASN A 446 -46.92 90.82 REMARK 500 10 ASP A 453 43.29 -72.29 REMARK 500 11 GLU A 389 -174.25 -172.06 REMARK 500 11 LYS A 392 -15.26 -140.30 REMARK 500 11 ILE A 399 92.74 77.60 REMARK 500 11 PRO A 400 -167.39 -78.36 REMARK 500 11 LEU A 418 -5.73 55.97 REMARK 500 11 GLU A 419 -58.26 65.75 REMARK 500 11 LYS A 444 13.86 -141.88 REMARK 500 11 ASN A 446 -39.56 78.98 REMARK 500 11 ASP A 471 -166.37 -100.46 REMARK 500 12 ASN A 378 120.58 75.47 REMARK 500 12 TYR A 379 40.29 -73.19 REMARK 500 12 GLU A 398 -84.80 -138.71 REMARK 500 12 ILE A 399 91.96 64.67 REMARK 500 12 ALA A 403 100.35 -57.31 REMARK 500 12 LEU A 418 -83.16 -68.00 REMARK 500 12 ASN A 446 -40.69 80.80 REMARK 500 12 ASP A 471 -167.58 -110.74 REMARK 500 13 TYR A 379 -39.36 -142.98 REMARK 500 13 SER A 420 -163.37 -170.54 REMARK 500 13 ASN A 446 -33.38 71.48 REMARK 500 14 ASN A 378 -70.08 -67.05 REMARK 500 14 LYS A 392 -63.72 68.65 REMARK 500 14 ILE A 399 -90.41 -103.83 REMARK 500 14 PRO A 400 -162.68 -105.78 REMARK 500 14 SER A 420 -162.28 -166.50 REMARK 500 14 ASN A 446 -48.74 76.52 REMARK 500 15 PRO A 391 29.42 -8.94 REMARK 500 15 LEU A 394 -74.12 -87.33 REMARK 500 15 LYS A 397 -24.50 -154.32 REMARK 500 15 ILE A 399 106.40 64.77 REMARK 500 15 LEU A 418 -158.22 -103.21 REMARK 500 15 ASN A 446 -32.26 75.60 REMARK 500 16 ARG A 388 -46.41 74.36 REMARK 500 16 SER A 396 -52.37 -121.10 REMARK 500 16 LYS A 397 -154.29 -119.58 REMARK 500 16 GLU A 398 -49.42 75.02 REMARK 500 16 ASN A 446 -49.45 81.86 REMARK 500 17 ARG A 376 -60.37 -165.11 REMARK 500 17 ASN A 378 -47.64 -169.09 REMARK 500 17 TYR A 379 -32.54 69.31 REMARK 500 17 PRO A 391 99.33 -25.65 REMARK 500 17 LYS A 392 -66.26 -103.41 REMARK 500 17 ILE A 399 96.12 53.09 REMARK 500 17 LYS A 401 33.28 -94.49 REMARK 500 17 GLU A 419 -54.17 165.14 REMARK 500 17 LYS A 444 43.08 -96.26 REMARK 500 17 ASN A 446 -39.10 85.54 REMARK 500 17 ASP A 471 -166.76 -120.51 REMARK 500 18 ARG A 388 -35.78 72.75 REMARK 500 18 PRO A 391 107.00 -27.32 REMARK 500 18 SER A 396 -66.87 -158.07 REMARK 500 18 LYS A 397 109.04 -175.76 REMARK 500 18 ILE A 399 115.19 77.84 REMARK 500 18 ASN A 446 0.03 49.90 REMARK 500 18 ASP A 471 -167.10 -111.25 REMARK 500 19 ASN A 378 -44.85 171.02 REMARK 500 19 TYR A 379 -72.00 62.84 REMARK 500 19 GLU A 389 -165.21 50.80 REMARK 500 19 ALA A 393 77.23 -101.42 REMARK 500 19 SER A 396 21.66 47.45 REMARK 500 19 LYS A 397 -43.05 177.69 REMARK 500 19 GLU A 398 149.08 80.42 REMARK 500 19 ILE A 399 91.98 70.08 REMARK 500 19 PRO A 400 173.60 -59.82 REMARK 500 19 GLU A 419 -64.62 67.14 REMARK 500 19 SER A 420 102.70 -160.97 REMARK 500 19 ASN A 446 -50.78 72.48 REMARK 500 20 ARG A 376 134.36 70.43 REMARK 500 20 ARG A 388 -35.60 74.62 REMARK 500 20 SER A 396 -49.25 -138.34 REMARK 500 20 GLU A 398 165.22 77.02 REMARK 500 20 ILE A 399 94.80 80.33 REMARK 500 20 ASN A 446 -33.67 80.86 REMARK 500 21 ARG A 376 48.97 -86.93 REMARK 500 21 LYS A 392 -54.57 69.27 REMARK 500 21 ALA A 393 34.66 -96.39 REMARK 500 21 LYS A 397 -34.59 -133.15 REMARK 500 21 LEU A 418 -91.24 -71.81 REMARK 500 21 SER A 420 103.15 -172.68 REMARK 500 21 ASN A 446 -32.33 69.58 REMARK 500 21 ASP A 471 -168.70 -112.68 REMARK 500 22 LEU A 394 -85.61 -79.85 REMARK 500 22 GLU A 398 -87.35 -155.41 REMARK 500 22 ILE A 399 85.52 64.38 REMARK 500 22 SER A 420 -164.70 -175.71 REMARK 500 22 LYS A 444 69.14 -119.56 REMARK 500 22 ASN A 446 -42.55 85.01 REMARK 500 22 ARG A 452 -59.64 47.23 REMARK 500 23 LEU A 394 109.13 -56.79 REMARK 500 23 ILE A 399 102.62 68.53 REMARK 500 23 GLU A 419 -67.71 65.68 REMARK 500 23 ASN A 446 -36.96 72.75 REMARK 500 23 ASP A 471 -166.64 -115.68 REMARK 500 24 ASN A 378 -85.05 66.89 REMARK 500 24 TYR A 379 -83.55 -142.01 REMARK 500 24 PRO A 391 -73.22 -65.79 REMARK 500 24 ALA A 393 51.25 70.80 REMARK 500 24 LEU A 394 107.78 -50.63 REMARK 500 24 ILE A 399 108.22 75.00 REMARK 500 24 LEU A 418 -156.89 -93.61 REMARK 500 24 ASN A 446 -32.46 70.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 12 ARG A 383 0.10 SIDE_CHAIN REMARK 500 14 ARG A 423 0.10 SIDE_CHAIN REMARK 500 23 ARG A 388 0.09 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 11 VAL A 417 24.6 L L OUTSIDE RANGE REMARK 500 15 TYR A 385 22.7 L L OUTSIDE RANGE REMARK 500 18 ASN A 446 21.7 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5041 RELATED DB: BMRB REMARK 900 CHEMICAL SHIFS OF HUMAN DNA LIGASE IIIALPHA BRCT DOMAIN REMARK 900 RELATED ID: 2EUB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE BRCT DOMAIN FROM HUMAN REMARK 900 REPLICATION FACTOR C LARGE SUBUNIT 1
DBREF 2K6G A 375 480 UNP P35251 RFC1_HUMAN 375 480
SEQADV 2K6G ASN A 481 UNP P35251 EXPRESSION TAG SEQADV 2K6G LEU A 482 UNP P35251 EXPRESSION TAG SEQADV 2K6G GLU A 483 UNP P35251 EXPRESSION TAG
SEQRES 1 A 109 LYS ARG THR ASN TYR GLN ALA TYR ARG SER TYR LEU ASN SEQRES 2 A 109 ARG GLU GLY PRO LYS ALA LEU GLY SER LYS GLU ILE PRO SEQRES 3 A 109 LYS GLY ALA GLU ASN CYS LEU GLU GLY LEU ILE PHE VAL SEQRES 4 A 109 ILE THR GLY VAL LEU GLU SER ILE GLU ARG ASP GLU ALA SEQRES 5 A 109 LYS SER LEU ILE GLU ARG TYR GLY GLY LYS VAL THR GLY SEQRES 6 A 109 ASN VAL SER LYS LYS THR ASN TYR LEU VAL MET GLY ARG SEQRES 7 A 109 ASP SER GLY GLN SER LYS SER ASP LYS ALA ALA ALA LEU SEQRES 8 A 109 GLY THR LYS ILE ILE ASP GLU ASP GLY LEU LEU ASN LEU SEQRES 9 A 109 ILE ARG ASN LEU GLU
HELIX 1 1 GLN A 380 GLU A 389 1 10 HELIX 2 2 GLU A 422 TYR A 433 1 12 HELIX 3 3 GLY A 455 GLY A 466 1 12 HELIX 4 4 ASP A 471 LEU A 482 1 12
SHEET 1 A 4 LYS A 436 VAL A 437 0 SHEET 2 A 4 ILE A 411 THR A 415 1 N PHE A 412 O LYS A 436 SHEET 3 A 4 TYR A 447 MET A 450 1 O VAL A 449 N VAL A 413 SHEET 4 A 4 LYS A 468 ILE A 470 1 O ILE A 470 N LEU A 448
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000