2K5R - Header Asymmetric Unit

HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 30-JUN-08 2K5R

TITLE SOLUTION NMR STRUCTURE OF XF2673 FROM XYLELLA FASTIDIOSA. TITLE 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET XFR39

COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN XF2673; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUE 90-97 REPRESENT A NON-NATIVE COMPND 6 PURIFICATION TAG (LEHHHHHH)

SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: XYLELLA FASTIDIOSA TEMECULA1; SOURCE 3 ORGANISM_TAXID: 183190; SOURCE 4 GENE: PD_2037; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: XFR39-21.3; SOURCE 9 OTHER_DETAILS: C-TERMINAL TAG LEHHHHHH. THE PROTEIN IS A SOURCE 10 MONOMER BY GEL FILTRATION CHROMATOGRAPHY AND STATIC LIGHT SOURCE 11 SCATTERING

KEYWDS SOLUTION NMR STRUCTURE, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NORTHEAST STRUCTURAL GENOMICS KEYWDS 3 CONSORTIUM, NESG, UNKNOWN FUNCTION

EXPDTA SOLUTION NMR

NUMMDL 20

AUTHOR Y.TANG,H.WANG,M.JIANG,M.MAGLAQUI,R.XIAO,J.LIU,M.C.BARAN, AUTHOR 2 G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG)

REVDAT 2 24-FEB-09 2K5R 1 VERSN REVDAT 1 26-AUG-08 2K5R 0

JRNL AUTH Y.TANG,H.WANG,M.JIANG,M.MAGLAQUI,R.XIAO,J.LIU, JRNL AUTH 2 M.C.BARAN,G.SWAPNA,T.B.ACTON,B.ROST,G.T.MONTELIONE JRNL TITL SOLUTION NMR STRUCTURE OF XF2673 FROM XYLELLA JRNL TITL 2 FASTIDIOSA. NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM TARGET XFR39 JRNL REF TO BE PUBLISHED JRNL REFN

REMARK 1

REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.

REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES AND READ REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL REMARK 3 OF 1591 COMFORMATIONALLY-RESTRICTING NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 100 DIHEDRAL ANGLE CONSTRAINTS, AND 42 HYDROGEN REMARK 3 BOND CONSTRAINTS (18.8 CONSTRAINTS PER RESIDUE, 4.4 LONG RANGE REMARK 3 CONSTRAINTS PER RESIDUE, COMPUTED FOR RESIDUES 1 TO 97 BY PSVS REMARK 3 1.3) STRUCTURE DETERMINATION WAS PERFORMED ITERATIVELY USING REMARK 3 AUTOSTRUCTURE AND CYANA. THE 20 LOWEST ENERGY STRUCTURES OUT REMARK 3 OF 100 WERE FURTHER REFINED BY RESTRAINED MOLECULAR DYNAMICS/ REMARK 3 ENERGY MINIMIZATION IN EXPLICIT WATER (CNS). THE C-TERMINAL REMARK 3 HIS TAG RESIDUES OF THE PROTEIN (HHHHHH) WERE INCLUDED IN ALL REMARK 3 STRUCTURE CALCULATIONS AND HAVE BEEN INCLUDED IN THIS REMARK 3 DEPOSITION. COORDINATES FOR THE FOLLOWING RESIDUES ARE NOT REMARK 3 WELL DETERMINED: 1-17, 67-68, 88-97. THE STRUCTURE WAS REMARK 3 DETERMINED USING TRIPLE RESONANCE NMR SPECTROSCOPY. AUTOMATED REMARK 3 BACKBONE ASSIGNMENTS WERE MADE USING AUTOASSIGN AND THE SIDE REMARK 3 CHAIN ASSIGNMENTS WERE COMPLETED MANUALLY. AUTOMATIC NOESY REMARK 3 ASSIGNMENTS AS WELL AS DISTANCE, DIHEDRAL ANGLE (TALOS) AND REMARK 3 HYDROGEN BOND CONSTRAINTS WERE DETERMINED USING CYANA. REMARK 3 COMPLETENESS OF NMR ASSIGNMENT: BACKBONE, 91.81%, SIDE CHAIN, REMARK 3 80.87%, AROMATICS, 60.00%, STEREOSPECIFIC METHYL, 82.35%, REMARK 3 FINAL STRUCTURE QUALITY FACTORS (FOR RESIDUE 1-97 PSVS 1.3), REMARK 3 WHERE ORDERED RESIDUE RANGES COMPRISE: 18-66, 69-87. (A) RMSD REMARK 3 (ORDERED RESIDUES): BB 0.82, HEAVY ATOM: 1.46 (B) RAMACHANDRAN REMARK 3 STATISTICS FOR ORDERED RESIDUES: MOST FAVORED, 92.8%, REMARK 3 ADDITIONALLY ALLOWED: 7.2%, GENEROUSLY ALLOWED : 0.0%, REMARK 3 DISALLOWED, 0.0%. (C) PROCHECK SCORES FOR ORDERED RESIDUES REMARK 3 (RAW/Z): PHI-PSI, -0.30/-0.87, ALL , -0.26/-1.54. (D) REMARK 3 MOLPROBITY CLASH SCORE (RAW/Z): 16.58/-1.32. (E) RPF SCORES REMARK 3 FOR GOODNESS OF FIT TO NOESY DATA (RESIDUE 1-97): RECALL, 1, REMARK 3 PRECISION, 0.979, F-MEASURE, 0.99, DP-SCORE, 0.823.

REMARK 4 REMARK 4 2K5R COMPLIES WITH FORMAT V. 3.15, 01-DEC-08

REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-JUL-08. REMARK 100 THE RCSB ID CODE IS RCSB100710.

REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 100 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.0 MM [U-100% 13C; U-100% REMARK 210 15N] XFR39, 20 MM MES, 100 MM REMARK 210 NACL, 5 MM CACL2, 10 MM DTT, REMARK 210 0.02 % NAN3, 50 UM DSS, 95% REMARK 210 H2O/5% D2O; 1.0 MM [U-5% 13C; REMARK 210 U-100% 15N] XFR39, 20 MM MES, REMARK 210 100 MM NACL, 5 MM CACL2, 10 MM REMARK 210 DTT, 0.02 % NAN3, 50 UM DSS, REMARK 210 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 2D 1H-13C HSQC_ARMATIC, REMARK 210 3D CBCA(CO)NH, 3D HBHA(CO)NH, REMARK 210 3D HNCACB, 3D HCCH-TOCSY, 3D REMARK 210 HCCH-COSY, 3D CCH-TOCSY, 3D REMARK 210 HNCO, 3D 1H-15N NOESY, 3D REMARK 210 SIMUTAEOUS NOESY, 3D 1H-13C REMARK 210 NOESY_AROMATIC, 2D 1H-13C REMARK 210 HSQC_HIGH RESOLUTION REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ, 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN 2.1, AUTOASSIGN REMARK 210 2.2.1, SPARKY 3.110, REMARK 210 AUTOSTRUCTURE 2.2.1, CYANA REMARK 210 2.1, NMRPIPE 2.3, PSVS 1.3, REMARK 210 PDBSTAT 5.0 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL

REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.

REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 12 63.93 -68.51 REMARK 500 1 PRO A 17 107.01 -56.37 REMARK 500 1 ASP A 67 -49.69 72.34 REMARK 500 1 SER A 68 -20.59 166.02 REMARK 500 2 PRO A 17 -167.53 -67.75 REMARK 500 2 ASP A 67 -87.10 58.97 REMARK 500 2 SER A 68 10.87 -147.11 REMARK 500 2 ASP A 88 107.46 -54.14 REMARK 500 3 ASP A 2 40.00 -81.09 REMARK 500 3 LEU A 5 -71.83 -80.74 REMARK 500 3 LEU A 6 -15.50 64.20 REMARK 500 3 HIS A 94 106.72 -52.67 REMARK 500 4 ARG A 15 86.59 59.75 REMARK 500 4 PRO A 17 110.87 -33.57 REMARK 500 4 LEU A 72 31.42 -81.78 REMARK 500 4 HIS A 92 -12.31 -153.69 REMARK 500 4 HIS A 94 88.31 -66.69 REMARK 500 4 HIS A 95 33.96 -76.12 REMARK 500 4 HIS A 96 40.91 -152.40 REMARK 500 5 ARG A 15 80.51 60.45 REMARK 500 5 ASP A 67 -81.39 59.98 REMARK 500 5 ASP A 88 -152.91 -155.25 REMARK 500 5 LYS A 89 -176.44 -68.62 REMARK 500 5 LEU A 90 44.95 -76.43 REMARK 500 6 PRO A 87 90.81 -68.47 REMARK 500 6 HIS A 95 -32.97 72.22 REMARK 500 7 ILE A 83 97.66 -69.18 REMARK 500 7 ALA A 84 4.69 -66.17 REMARK 500 9 LEU A 6 79.69 -67.64 REMARK 500 9 PRO A 12 88.21 -68.18 REMARK 500 9 ASP A 67 -79.84 62.50 REMARK 500 9 SER A 68 12.97 -158.71 REMARK 500 10 PRO A 12 39.10 -75.54 REMARK 500 10 ASP A 88 25.14 -79.09 REMARK 500 11 ASP A 67 -78.64 61.36 REMARK 500 11 SER A 68 23.56 -169.61 REMARK 500 11 PRO A 70 90.26 -65.07 REMARK 500 11 PRO A 87 105.02 -49.45 REMARK 500 11 LYS A 89 -32.81 73.09 REMARK 500 11 GLU A 91 -87.77 63.71 REMARK 500 11 HIS A 92 48.19 32.82 REMARK 500 11 HIS A 93 94.19 -69.25 REMARK 500 12 PRO A 12 95.03 -63.38 REMARK 500 12 PRO A 17 107.59 -52.96 REMARK 500 12 PRO A 70 90.51 -64.62 REMARK 500 12 ALA A 84 6.84 -68.65 REMARK 500 13 HIS A 7 3.14 -68.08 REMARK 500 13 PRO A 12 -172.01 -62.04 REMARK 500 13 LEU A 72 31.19 -91.02 REMARK 500 13 ASP A 88 -157.96 -71.29 REMARK 500 13 HIS A 95 102.82 -169.72 REMARK 500 14 ASP A 2 30.52 -87.56 REMARK 500 14 LEU A 8 -83.59 -99.90 REMARK 500 14 ARG A 15 76.42 -119.47 REMARK 500 14 GLU A 91 85.66 -66.18 REMARK 500 15 LEU A 5 -72.00 -90.54 REMARK 500 15 LEU A 72 65.56 -104.04 REMARK 500 15 HIS A 94 -73.83 63.09 REMARK 500 16 LEU A 8 114.85 -32.48 REMARK 500 16 THR A 37 53.72 -148.72 REMARK 500 17 ARG A 3 -60.79 -107.45 REMARK 500 17 LEU A 8 16.24 59.58 REMARK 500 17 PRO A 17 99.83 -49.34 REMARK 500 17 LYS A 89 33.64 -89.45 REMARK 500 17 HIS A 95 118.71 -165.35 REMARK 500 18 ALA A 84 1.53 -65.70 REMARK 500 18 PRO A 87 90.18 -65.85 REMARK 500 18 HIS A 92 72.63 -166.18 REMARK 500 18 HIS A 95 96.42 71.62 REMARK 500 19 LEU A 6 36.33 -84.38 REMARK 500 19 ARG A 15 63.00 -102.68 REMARK 500 19 ASP A 67 -78.55 62.22 REMARK 500 19 PRO A 70 97.41 -69.15 REMARK 500 19 HIS A 94 87.87 -59.23 REMARK 500 20 ASP A 2 43.69 -79.15 REMARK 500 20 LEU A 6 3.68 -66.67 REMARK 500 20 ASP A 67 -50.68 71.48 REMARK 500 20 SER A 68 -24.15 173.64 REMARK 500 20 HIS A 95 -28.84 72.44 REMARK 500 REMARK 500 REMARK: NULL

REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: XFR39 RELATED DB: TARGETDB REMARK 900 RELATED ID: 15847 RELATED DB: BMRB

DBREF 2K5R A 1 89 UNP Q87A02 Q87A02_XYLFT 1 89

SEQADV 2K5R LEU A 90 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R GLU A 91 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 92 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 93 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 94 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 95 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 96 UNP Q87A02 EXPRESSION TAG SEQADV 2K5R HIS A 97 UNP Q87A02 EXPRESSION TAG

SEQRES 1 A 97 MET ASP ARG LYS LEU LEU HIS LEU LEU CYS SER PRO ASP SEQRES 2 A 97 THR ARG GLN PRO LEU SER LEU LEU GLU SER LYS GLY LEU SEQRES 3 A 97 GLU ALA LEU ASN LYS ALA ILE VAL SER GLY THR VAL GLN SEQRES 4 A 97 ARG ALA ASP GLY SER ILE GLN ASN GLN SER LEU HIS GLU SEQRES 5 A 97 ALA LEU ILE THR ARG ASP ARG LYS GLN VAL PHE ARG ILE SEQRES 6 A 97 GLU ASP SER ILE PRO VAL LEU LEU PRO GLU GLU ALA ILE SEQRES 7 A 97 ALA THR ILE GLN ILE ALA ASN PHE PRO ASP LYS LEU GLU SEQRES 8 A 97 HIS HIS HIS HIS HIS HIS

HELIX 1 1 GLU A 22 GLY A 36 1 15 HELIX 2 2 LEU A 73 GLU A 75 5 3 HELIX 3 3 ILE A 81 ILE A 83 5 3

SHEET 1 A 4 SER A 19 LEU A 20 0 SHEET 2 A 4 GLU A 52 ILE A 55 -1 O ILE A 55 N SER A 19 SHEET 3 A 4 GLN A 61 GLU A 66 -1 O PHE A 63 N LEU A 54 SHEET 4 A 4 ILE A 69 VAL A 71 -1 O ILE A 69 N GLU A 66 SHEET 1 B 4 SER A 19 LEU A 20 0 SHEET 2 B 4 GLU A 52 ILE A 55 -1 O ILE A 55 N SER A 19 SHEET 3 B 4 GLN A 61 GLU A 66 -1 O PHE A 63 N LEU A 54 SHEET 4 B 4 ALA A 77 ALA A 79 -1 O ILE A 78 N VAL A 62

CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1

ORIGX1 1.000000 0.000000 0.000000 0.00000

ORIGX2 0.000000 1.000000 0.000000 0.00000

ORIGX3 0.000000 0.000000 1.000000 0.00000

SCALE1 1.000000 0.000000 0.000000 0.00000

SCALE2 0.000000 1.000000 0.000000 0.00000

SCALE3 0.000000 0.000000 1.000000 0.00000