10 20 30 40 50 60 70 80 2K52 - Header ----|----|----|----|----|----|----|----|----|----|----|----|----|----|----|----| Asymmetric UnitHEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 24-JUN-08 2K52
TITLE STRUCTURE OF UNCHARACTERIZED PROTEIN MJ1198 FROM TITLE 2 METHANOCALDOCOCCUS JANNASCHII. NORTHEAST STRUCTURAL TITLE 3 GENOMICS TARGET MJR117B
COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN MJ1198; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES
SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; SOURCE 3 ORGANISM_TAXID: 2190; SOURCE 4 GENE: MJ1198; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+ MAGIC; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 21-23C; SOURCE 9 OTHER_DETAILS: EXPRESSION MEDIA: MJ9 100%N15 5%C13 MJ9 SOURCE 10 100%N15 100%C13
KEYWDS UNCHARACTERIZED PROTEIN, METAL-BINDING, ZINC, ZINC-FINGER, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, UNKNOWN KEYWDS 4 FUNCTION
EXPDTA SOLUTION NMR
NUMMDL 20
AUTHOR P.ROSSI,M.MAGLAQUI,E.L.FOOTE,K.HAMILTON,C.CICCOSANTI,R.XIAO, AUTHOR 2 R.NAIR,G.SWAPNA,J.K.EVERETT,T.B.ACTON,B.ROST,G.T.MONTELIONE, AUTHOR 3 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG)
REVDAT 2 24-FEB-09 2K52 1 VERSN REVDAT 1 15-JUL-08 2K52 0
JRNL AUTH P.ROSSI,R.XIAO,T.B.ACTON,G.T.MONTELIONE JRNL TITL STRUCTURE OF UNCHARACTERIZED PROTEIN MJ1198 FROM JRNL TITL 2 METHANOCALDOCOCCUS JANNASCHII. NORTHEAST JRNL TITL 3 STRUCTURAL GENOMICS TARGET MJR117B JRNL REF TO BE PUBLISHED JRNL REFN
REMARK 1
REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE.
REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, ADAMS, CLORE, GROS, NILGES REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4 REMARK 4 2K52 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08
REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-08. REMARK 100 THE RCSB ID CODE IS RCSB100685.
REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 4.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.682 MM [U-100% 13C 15N] REMARK 210 MJR117B, 20 MM AMMONIUM REMARK 210 ACETATE, 100 MM SODIUM REMARK 210 CHLORIDE, 0.02 MM SODIUM REMARK 210 AZIDE, 10 MM DTT, 50 UM DSS, 5 REMARK 210 MM CALCIUM CHLORIDE, 1X REMARK 210 PROTEASE INHIBITOR, 90% H2O/ REMARK 210 10% D2O; 1.226 MM [5% 13C; U- REMARK 210 100% 15N] MJR117B, 20 MM REMARK 210 AMMONIUM ACETATE, 100 MM REMARK 210 SODIUM CHLORIDE, 0.02 MM REMARK 210 SODIUM AZIDE, 10 MM DTT, 50 UM REMARK 210 DSS, 5 MM CALCIUM CHLORIDE, 1X REMARK 210 PROTEASE INHIBITOR, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC, 2D 1H-13C REMARK 210 HSQC, 3D CBCA(CO)NH, 3D HNCO, REMARK 210 3D HN(CO)CA, 3D HBHA(CO)NH, 3D REMARK 210 HNCACB, 3D HN(CA)CO, 3D HCCH- REMARK 210 TOCSY, 3D HCCH-COSY, 3D CCH- REMARK 210 TOCSY, 3D SIM 13C, 15N NOESY, REMARK 210 3D ARO 13C NOESY, 2D 1H-13C REMARK 210 HSQC STEREO, 2D HETNOE, PSEUDO REMARK 210 2D N15 T1, PSEUDO 2D N15 T2 REMARK 210 (CPMG), 2D 1H-13C HSQC CT ARO REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ, 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CYANA 2.1, NMRPIPE, REMARK 210 AUTOASSIGN, SPARKY 3.113, REMARK 210 TOPSPIN 2.1, REMARK 210 RPF(AUTOSTRUCTURE) 2.2.1, PSVS REMARK 210 1.3, MOLMOL, PROCHECK, REMARK 210 MOLPROBITY, TALOS REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: MONOMER BY GEL FILTRATION CHROMATOGRAPHY/LIGHT REMARK 210 SCATTERING AND BY NMR. T1/T2 (MS) = 792.1/78.18, TAUC = REMARK 210 9.7(NS) CONSISTENT WITH MOLECULAR WEIGHT. STRUCTURE DETERMINED REMARK 210 BY TRIPLE RESONANCE NMR SPECTROSCOPY. NOESY ASSIGNMENTS BY REMARK 210 CYANA2.1. 20 OF 100 STRUCTURES LOWEST TARGET FUNCTION SELECTED REMARK 210 WITH CYANA2.1. SELECTED MODELS ARE FURTHER REFINED USING CNS REMARK 210 IN EXPLICIT WATER SHELL (NILGES PROTOCOL WITH PARAM19). REMARK 210 ASSIGNMENT STATS AROMATIC (SC) 92.6%, VL METHYL STEREOSPECIFIC REMARK 210 100%, UNAMBIGUOS SIDECHAIN NH2 100%. STRUCTURE BASED ON 1088 REMARK 210 NOE, 166 DIHE. MAX NOE VIOLATION: 0.25 A (1MODEL); MAX DIHE REMARK 210 VIOLATION: 3.2 DEG. 2 TOTAL CLOSE CONTACTS PER 20 MODELS. REMARK 210 STRUCTURE QUALITY FACTOR > 1.8. SECONDARY STRUCTURE - BETA REMARK 210 STRANDS: (8-17, 20-26, 29- 33, 51-60, 65-70). RMSD 0.4 REMARK 210 BACKBONE, 0.8 ALL HEAVY ATOMS. MOLPROBITY CLASH: 16.80/-1.36 REMARK 210 (RAW/Z). RPF SCORES ALL ASSIGNED PRECISION: 0.89, F-MEASURE: REMARK 210 0.93, DP-SCORE: 0.83.
REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS.
REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 HIS A 75 REMARK 465 HIS A 76 REMARK 465 HIS A 77 REMARK 465 HIS A 78 REMARK 465 HIS A 79 REMARK 465 HIS A 80
REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ILE A 39 -79.69 -99.63 REMARK 500 1 ARG A 64 -0.92 65.20 REMARK 500 3 THR A 14 -64.40 -91.35 REMARK 500 3 ILE A 39 -80.99 -88.01 REMARK 500 3 ILE A 57 -67.88 -93.56 REMARK 500 4 TYR A 19 14.39 -142.65 REMARK 500 4 ILE A 39 -67.68 -104.66 REMARK 500 4 LEU A 73 88.87 -68.91 REMARK 500 5 ILE A 39 -82.17 -87.07 REMARK 500 6 ILE A 39 -74.34 -107.36 REMARK 500 6 ILE A 57 -70.88 -60.29 REMARK 500 7 ILE A 57 -70.93 -95.35 REMARK 500 8 THR A 14 -64.35 -103.76 REMARK 500 8 SER A 40 -62.85 -90.38 REMARK 500 9 ILE A 57 -73.93 -90.11 REMARK 500 11 PRO A 5 93.89 -63.45 REMARK 500 11 PRO A 72 40.51 -73.90 REMARK 500 12 PRO A 5 94.31 -61.96 REMARK 500 12 ILE A 39 -80.26 -104.82 REMARK 500 13 ILE A 39 -78.11 -109.94 REMARK 500 16 PRO A 5 103.21 -58.33 REMARK 500 17 ILE A 39 -73.61 -85.86 REMARK 500 17 ILE A 57 -71.42 -61.73 REMARK 500 18 ILE A 39 -80.46 -110.57 REMARK 500 18 PRO A 72 92.48 -65.71 REMARK 500 19 ILE A 39 -71.83 -63.66 REMARK 500 19 PRO A 72 83.71 -69.22 REMARK 500 20 ILE A 57 -70.12 -64.48 REMARK 500 REMARK 500 REMARK: NULL
REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MJR117B RELATED DB: TARGETDB REMARK 900 RELATED ID: 15821 RELATED DB: BMRB
DBREF 2K52 A 2 73 UNP Q58598 Y1198_METJA 131 202
SEQADV 2K52 MET A 1 UNP Q58598 EXPRESSION TAG SEQADV 2K52 GLU A 74 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 75 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 76 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 77 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 78 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 79 UNP Q58598 EXPRESSION TAG SEQADV 2K52 HIS A 80 UNP Q58598 EXPRESSION TAG
SEQRES 1 A 80 MET ASP VAL GLU PRO GLY LYS PHE TYR LYS GLY VAL VAL SEQRES 2 A 80 THR ARG ILE GLU LYS TYR GLY ALA PHE ILE ASN LEU ASN SEQRES 3 A 80 GLU GLN VAL ARG GLY LEU LEU ARG PRO ARG ASP MET ILE SEQRES 4 A 80 SER LEU ARG LEU GLU ASN LEU ASN VAL GLY ASP GLU ILE SEQRES 5 A 80 ILE VAL GLN ALA ILE ASP VAL ARG PRO GLU LYS ARG GLU SEQRES 6 A 80 ILE ASP PHE LYS TYR ILE PRO LEU GLU HIS HIS HIS HIS SEQRES 7 A 80 HIS HIS
HELIX 1 1 PRO A 35 MET A 38 5 4 HELIX 2 2 ARG A 42 LEU A 46 5 5
SHEET 1 A 6 PHE A 8 GLU A 17 0 SHEET 2 A 6 GLY A 20 ASN A 26 -1 O PHE A 22 N THR A 14 SHEET 3 A 6 VAL A 29 LEU A 33 -1 O VAL A 29 N LEU A 25 SHEET 4 A 6 GLU A 65 TYR A 70 1 O ILE A 66 N LEU A 32 SHEET 5 A 6 GLU A 51 VAL A 59 -1 N ILE A 57 O ASP A 67 SHEET 6 A 6 PHE A 8 GLU A 17 -1 N TYR A 9 O VAL A 54
CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 1.000000 0.000000 0.000000 0.00000
SCALE2 0.000000 1.000000 0.000000 0.00000
SCALE3 0.000000 0.000000 1.000000 0.00000